Wall clock time and date at job start Mon Mar 30 2020 01:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47279 * 2 1 4 4 C 1.50701 * 109.46892 * 119.99765 * 2 1 3 5 5 N 1.34781 * 120.00034 * 299.72761 * 4 2 1 6 6 O 1.21281 * 120.00210 * 120.00380 * 4 2 1 7 7 C 1.50694 * 109.47435 * 239.99680 * 2 1 3 8 8 O 1.21286 * 120.00360 * 241.91909 * 7 2 1 9 9 N 1.34773 * 119.99944 * 61.92008 * 7 2 1 10 10 C 1.46932 * 120.63103 * 174.53151 * 9 7 2 11 11 C 1.53190 * 108.77629 * 233.58087 * 10 9 7 12 12 C 1.53038 * 109.31296 * 305.36703 * 11 10 9 13 13 C 1.53041 * 109.54027 * 61.36719 * 12 11 10 14 14 H 1.08996 * 109.50277 * 58.57585 * 13 12 11 15 15 C 1.50696 * 109.50163 * 178.65361 * 13 12 11 16 16 H 1.07999 * 120.00464 * 119.99210 * 15 13 12 17 17 C 1.37881 * 119.99519 * 299.99972 * 15 13 12 18 18 N 1.31518 * 120.00034 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99871 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47232 * 59.99450 * 19 17 15 21 21 H 1.48502 * 109.46862 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46689 * 299.99116 * 19 17 15 23 23 C 1.46926 * 120.63250 * 354.24722 * 9 7 2 24 24 H 1.08994 * 109.47740 * 310.80286 * 1 2 3 25 25 H 1.09002 * 109.46789 * 70.80170 * 1 2 3 26 26 H 1.09003 * 109.47679 * 190.79899 * 1 2 3 27 27 H 1.08999 * 109.47203 * 164.48899 * 3 2 1 28 28 H 1.09001 * 109.46886 * 284.49046 * 3 2 1 29 29 H 1.08999 * 109.47098 * 44.49201 * 3 2 1 30 30 H 0.96999 * 119.99709 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00271 * 180.02562 * 5 4 2 32 32 H 1.09000 * 109.58810 * 353.37517 * 10 9 7 33 33 H 1.09003 * 109.58274 * 113.65362 * 10 9 7 34 34 H 1.09002 * 109.49447 * 65.31718 * 11 10 9 35 35 H 1.08998 * 109.49682 * 185.41075 * 11 10 9 36 36 H 1.09002 * 109.45955 * 181.38262 * 12 11 10 37 37 H 1.08992 * 109.46065 * 301.35490 * 12 11 10 38 38 H 0.97004 * 119.99942 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58924 * 246.20624 * 23 9 7 40 40 H 1.08999 * 109.58577 * 6.63053 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7111 -0.2466 2.4546 6 8 2.7295 -1.6964 1.1193 7 6 2.0323 -0.7104 -1.2303 8 8 2.7006 -1.7164 -1.1194 9 7 1.7390 -0.2279 -2.4541 10 6 2.3189 -0.8383 -3.6582 11 6 3.0041 0.2550 -4.4841 12 6 2.0030 1.3771 -4.7681 13 6 1.5348 1.9918 -3.4470 14 1 2.3952 2.3756 -2.8991 15 6 0.5744 3.1183 -3.7288 16 1 -0.4351 3.0756 -3.3474 17 6 0.9844 4.2036 -4.4739 18 7 2.2138 4.2558 -4.9381 19 14 -0.2058 5.6005 -4.8227 20 1 -0.6592 6.1963 -3.5403 21 1 0.4749 6.6390 -5.6372 22 1 -1.3789 5.0768 -5.5674 23 6 0.8284 0.9146 -2.6098 24 1 -0.3634 0.6715 0.7778 25 1 -0.3633 0.3379 -0.9706 26 1 -0.3634 -1.0095 0.1925 27 1 3.0947 1.4550 0.2748 28 1 1.9186 1.8707 -0.9950 29 1 1.4699 2.0294 0.7202 30 1 1.1570 0.5445 2.5435 31 1 2.0347 -0.7036 3.2467 32 1 3.0519 -1.5916 -3.3693 33 1 1.5295 -1.3041 -4.2481 34 1 3.8508 0.6553 -3.9264 35 1 3.3549 -0.1667 -5.4260 36 1 2.4811 2.1449 -5.3764 37 1 1.1450 0.9713 -5.3039 38 1 2.5024 5.0195 -5.4620 39 1 -0.0804 0.5910 -3.1172 40 1 0.5776 1.3183 -1.6289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347820284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:55 Heat of formation + Delta-G solvation = -68.251317 kcal Electronic energy + Delta-G solvation = -22135.560194 eV Core-core repulsion = 18950.471004 eV Total energy + Delta-G solvation = -3185.089190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.74466 -38.63690 -36.57400 -35.08901 -33.28876 -33.11198 -31.13250 -30.04527 -27.36994 -25.25260 -25.16451 -23.52476 -22.05194 -20.89073 -19.55672 -18.42824 -17.26964 -16.52225 -16.33339 -15.48550 -15.20341 -15.02337 -14.67334 -14.21661 -13.97221 -13.73827 -13.35081 -12.98412 -12.84439 -12.53789 -12.32575 -12.06572 -11.91702 -11.73046 -11.38639 -11.12554 -11.02632 -10.83726 -10.75320 -10.24119 -10.00705 -9.78859 -9.72278 -9.56409 -9.48243 -8.93982 -8.73372 -8.46104 -7.85572 -6.09886 -4.19086 2.79828 3.13896 3.23789 3.27998 3.30162 3.32172 3.81857 4.33096 4.62650 4.79209 5.03218 5.12898 5.19577 5.56236 5.63951 5.66367 5.72480 5.79965 5.85697 5.92012 6.05866 6.09170 6.18363 6.32410 6.37741 6.52097 6.57415 6.77921 6.85076 6.99273 7.16222 7.31285 7.38795 7.60450 7.82364 7.95177 8.04825 8.28123 8.41107 8.74702 8.84875 9.46832 10.94856 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.006176 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.153962 B = 4532.460125 C = 5286.601085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 C -0.161 4.161 4 C 0.527 3.473 5 N -0.859 5.859 6 O -0.500 6.500 7 C 0.521 3.479 8 O -0.518 6.518 9 N -0.603 5.603 10 C 0.117 3.883 11 C -0.134 4.134 12 C -0.113 4.113 13 C 0.039 3.961 14 H 0.032 0.968 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.088 3.912 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.398 0.602 31 H 0.399 0.601 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.059 0.941 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 -3.788 9.110 10.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.107 4.107 3 C -0.218 4.218 4 C 0.310 3.690 5 N -0.424 5.424 6 O -0.372 6.372 7 C 0.306 3.694 8 O -0.393 6.393 9 N -0.336 5.336 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.151 4.151 13 C 0.020 3.980 14 H 0.050 0.950 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.033 4.033 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.227 0.773 31 H 0.229 0.771 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.947 -4.873 8.767 10.454 hybrid contribution -0.822 1.176 0.100 1.439 sum -3.769 -3.696 8.867 10.319 Atomic orbital electron populations 1.22279 0.90884 1.02985 1.05272 1.20790 0.98695 0.98046 0.93186 1.22299 1.01562 0.91500 1.06410 1.20028 0.80152 0.84315 0.84519 1.43823 1.57092 1.33788 1.07706 1.90863 1.35452 1.24883 1.85997 1.19781 0.80891 0.84704 0.83979 1.90767 1.38662 1.24149 1.85747 1.48163 1.47119 1.33344 1.05005 1.21547 0.97583 0.95941 0.85469 1.21999 0.99655 0.97213 0.98354 1.21627 0.96547 0.96075 1.00808 1.19092 0.95737 0.91013 0.92109 0.94965 1.21016 0.97969 1.03026 1.33873 0.92475 1.24937 0.95069 0.98109 0.95516 1.69865 1.16437 1.30380 1.35659 0.86672 0.81141 0.81885 0.78377 1.20241 1.21330 1.20255 1.22776 0.92180 0.86372 1.01986 0.90996 0.88755 0.91951 0.91966 0.87616 0.91095 0.77332 0.77058 0.90366 0.92374 0.92486 0.92551 0.88695 0.94587 0.92795 0.92314 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 7.92 37.15 0.29 -1.59 16 2 C -0.10 -1.51 0.59 -156.82 -0.09 -1.61 16 3 C -0.16 -2.24 7.89 37.16 0.29 -1.95 16 4 C 0.53 8.17 6.65 -10.98 -0.07 8.10 16 5 N -0.86 -8.51 8.68 31.22 0.27 -8.24 16 6 O -0.50 -10.36 15.02 -18.96 -0.28 -10.64 16 7 C 0.52 10.02 6.48 -10.99 -0.07 9.95 16 8 O -0.52 -11.93 13.62 -18.96 -0.26 -12.19 16 9 N -0.60 -11.18 2.94 -172.50 -0.51 -11.69 16 10 C 0.12 2.13 6.41 -3.71 -0.02 2.11 16 11 C -0.13 -2.54 6.08 -26.61 -0.16 -2.70 16 12 C -0.11 -2.46 4.96 -26.69 -0.13 -2.59 16 13 C 0.04 0.87 1.93 -91.42 -0.18 0.70 16 14 H 0.03 0.79 7.29 -51.93 -0.38 0.41 16 15 C -0.52 -12.67 8.57 -34.44 -0.30 -12.96 16 16 H 0.06 1.34 7.74 -52.49 -0.41 0.93 16 17 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -23.56 11.31 55.43 0.63 -22.93 16 19 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 23 C 0.09 1.61 3.16 -3.48 -0.01 1.59 16 24 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16 25 H 0.09 1.20 4.71 -51.93 -0.24 0.95 16 26 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 28 H 0.11 1.74 3.90 -51.93 -0.20 1.53 16 29 H 0.07 0.74 7.80 -51.93 -0.41 0.34 16 30 H 0.40 2.73 8.30 -40.82 -0.34 2.40 16 31 H 0.40 3.39 8.93 -40.82 -0.36 3.02 16 32 H 0.08 1.46 7.04 -51.93 -0.37 1.10 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.51 2.93 -51.93 -0.15 1.35 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -32.01 305.91 -6.77 -38.78 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.66 Total: 7.01 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.55 Total: 0.63 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.39 Total: -42.85 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.54 Total: -22.83 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.01 -6.77 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347820284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.472 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds