Wall clock time and date at job start Mon Mar 30 2020 01:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47279 * 2 1 4 4 C 1.50701 * 109.46892 * 119.99765 * 2 1 3 5 5 N 1.34781 * 120.00034 * 299.72761 * 4 2 1 6 6 O 1.21281 * 120.00210 * 120.00380 * 4 2 1 7 7 C 1.50694 * 109.47435 * 239.99680 * 2 1 3 8 8 O 1.21286 * 120.00360 * 241.91909 * 7 2 1 9 9 N 1.34773 * 119.99944 * 61.92008 * 7 2 1 10 10 C 1.46932 * 120.63103 * 174.53151 * 9 7 2 11 11 C 1.53190 * 108.77629 * 233.58087 * 10 9 7 12 12 C 1.53038 * 109.31296 * 305.36703 * 11 10 9 13 13 C 1.53041 * 109.54027 * 61.36719 * 12 11 10 14 14 H 1.08996 * 109.50277 * 58.57585 * 13 12 11 15 15 C 1.50696 * 109.50163 * 178.65361 * 13 12 11 16 16 H 1.07999 * 120.00464 * 119.99210 * 15 13 12 17 17 C 1.37881 * 119.99519 * 299.99972 * 15 13 12 18 18 N 1.31518 * 120.00034 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99871 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47232 * 59.99450 * 19 17 15 21 21 H 1.48502 * 109.46862 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46689 * 299.99116 * 19 17 15 23 23 C 1.46926 * 120.63250 * 354.24722 * 9 7 2 24 24 H 1.08994 * 109.47740 * 310.80286 * 1 2 3 25 25 H 1.09002 * 109.46789 * 70.80170 * 1 2 3 26 26 H 1.09003 * 109.47679 * 190.79899 * 1 2 3 27 27 H 1.08999 * 109.47203 * 164.48899 * 3 2 1 28 28 H 1.09001 * 109.46886 * 284.49046 * 3 2 1 29 29 H 1.08999 * 109.47098 * 44.49201 * 3 2 1 30 30 H 0.96999 * 119.99709 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00271 * 180.02562 * 5 4 2 32 32 H 1.09000 * 109.58810 * 353.37517 * 10 9 7 33 33 H 1.09003 * 109.58274 * 113.65362 * 10 9 7 34 34 H 1.09002 * 109.49447 * 65.31718 * 11 10 9 35 35 H 1.08998 * 109.49682 * 185.41075 * 11 10 9 36 36 H 1.09002 * 109.45955 * 181.38262 * 12 11 10 37 37 H 1.08992 * 109.46065 * 301.35490 * 12 11 10 38 38 H 0.97004 * 119.99942 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58924 * 246.20624 * 23 9 7 40 40 H 1.08999 * 109.58577 * 6.63053 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7111 -0.2466 2.4546 6 8 2.7295 -1.6964 1.1193 7 6 2.0323 -0.7104 -1.2303 8 8 2.7006 -1.7164 -1.1194 9 7 1.7390 -0.2279 -2.4541 10 6 2.3189 -0.8383 -3.6582 11 6 3.0041 0.2550 -4.4841 12 6 2.0030 1.3771 -4.7681 13 6 1.5348 1.9918 -3.4470 14 1 2.3952 2.3756 -2.8991 15 6 0.5744 3.1183 -3.7288 16 1 -0.4351 3.0756 -3.3474 17 6 0.9844 4.2036 -4.4739 18 7 2.2138 4.2558 -4.9381 19 14 -0.2058 5.6005 -4.8227 20 1 -0.6592 6.1963 -3.5403 21 1 0.4749 6.6390 -5.6372 22 1 -1.3789 5.0768 -5.5674 23 6 0.8284 0.9146 -2.6098 24 1 -0.3634 0.6715 0.7778 25 1 -0.3633 0.3379 -0.9706 26 1 -0.3634 -1.0095 0.1925 27 1 3.0947 1.4550 0.2748 28 1 1.9186 1.8707 -0.9950 29 1 1.4699 2.0294 0.7202 30 1 1.1570 0.5445 2.5435 31 1 2.0347 -0.7036 3.2467 32 1 3.0519 -1.5916 -3.3693 33 1 1.5295 -1.3041 -4.2481 34 1 3.8508 0.6553 -3.9264 35 1 3.3549 -0.1667 -5.4260 36 1 2.4811 2.1449 -5.3764 37 1 1.1450 0.9713 -5.3039 38 1 2.5024 5.0195 -5.4620 39 1 -0.0804 0.5910 -3.1172 40 1 0.5776 1.3183 -1.6289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347820284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:54 Heat of formation + Delta-G solvation = -90.738257 kcal Electronic energy + Delta-G solvation = -22136.535301 eV Core-core repulsion = 18950.471004 eV Total energy + Delta-G solvation = -3186.064297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.09395 -40.00285 -38.18755 -36.38780 -35.06473 -34.22341 -32.72289 -31.71025 -28.39662 -26.98153 -26.71289 -24.78344 -23.60434 -22.40305 -20.99344 -19.83290 -18.59409 -18.02746 -17.78692 -16.89430 -16.64899 -16.34128 -16.31413 -15.59759 -15.42037 -15.05249 -14.82954 -14.51249 -14.44460 -13.96751 -13.64809 -13.37013 -13.22702 -13.07976 -12.86533 -12.72250 -12.57064 -12.38285 -12.23116 -11.85316 -11.76555 -11.54377 -11.13758 -11.00501 -10.71542 -10.58926 -10.36413 -10.17894 -9.43417 -8.01186 -6.15972 1.50531 1.51764 1.56908 1.58203 1.73591 1.98526 2.50025 2.65794 3.26983 3.34594 3.74836 3.92767 3.99652 4.18926 4.24389 4.29986 4.53590 4.55423 4.64164 4.69728 4.77769 4.79394 4.81705 4.87816 4.98050 5.10217 5.21285 5.24377 5.34776 5.49377 5.67253 5.70439 5.96243 5.98932 6.14604 6.38789 6.46651 6.56665 6.96149 7.23002 7.44608 7.53145 9.02256 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.006176 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.153962 B = 4532.460125 C = 5286.601085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.156 4.156 4 C 0.526 3.474 5 N -0.827 5.827 6 O -0.562 6.562 7 C 0.511 3.489 8 O -0.562 6.562 9 N -0.603 5.603 10 C 0.117 3.883 11 C -0.123 4.123 12 C -0.108 4.108 13 C 0.039 3.961 14 H 0.002 0.998 15 C -0.525 4.525 16 H 0.068 0.932 17 C 0.016 3.984 18 N -0.918 5.918 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.296 1.296 22 H -0.272 1.272 23 C 0.100 3.900 24 H 0.115 0.885 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.418 0.582 31 H 0.410 0.590 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 -3.073 10.692 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 C -0.213 4.213 4 C 0.309 3.691 5 N -0.393 5.393 6 O -0.438 6.438 7 C 0.298 3.702 8 O -0.440 6.440 9 N -0.336 5.336 10 C -0.006 4.006 11 C -0.161 4.161 12 C -0.146 4.146 13 C 0.020 3.980 14 H 0.020 0.980 15 C -0.564 4.564 16 H 0.087 0.913 17 C -0.183 4.183 18 N -0.557 5.557 19 Si 0.776 3.224 20 H -0.191 1.191 21 H -0.222 1.222 22 H -0.197 1.197 23 C -0.021 4.021 24 H 0.133 0.867 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.250 0.750 31 H 0.242 0.758 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.305 -4.109 10.392 12.371 hybrid contribution -0.083 0.968 -0.378 1.043 sum -5.388 -3.141 10.014 11.797 Atomic orbital electron populations 1.22331 0.88057 1.04197 1.06531 1.20823 1.00794 0.97741 0.91027 1.22287 1.01781 0.91075 1.06194 1.20122 0.79484 0.83592 0.85889 1.43518 1.55775 1.33770 1.06278 1.90848 1.38405 1.27661 1.86924 1.20606 0.80071 0.84362 0.85142 1.90747 1.40565 1.26245 1.86424 1.48243 1.46971 1.33172 1.05188 1.21549 0.98022 0.95394 0.85632 1.21869 0.98334 0.96620 0.99291 1.21485 0.96872 0.95985 1.00298 1.19020 0.94723 0.91883 0.92404 0.98024 1.21420 0.98643 1.03350 1.32971 0.91344 1.25675 0.96312 1.00525 0.95748 1.70027 1.18175 1.30841 1.36671 0.85734 0.79176 0.79071 0.78380 1.19125 1.22174 1.19748 1.22687 0.91552 0.85094 1.02743 0.86687 0.89306 0.91983 0.93080 0.90062 0.86627 0.74983 0.75799 0.91061 0.90527 0.94347 0.90520 0.91941 0.94436 0.93302 0.91420 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 7.92 71.98 0.57 -2.56 16 2 C -0.10 -2.74 0.59 -53.68 -0.03 -2.77 16 3 C -0.16 -3.99 7.89 71.98 0.57 -3.43 16 4 C 0.53 15.43 6.65 87.66 0.58 16.01 16 5 N -0.83 -13.67 8.68 -173.53 -1.51 -15.17 16 6 O -0.56 -23.35 15.02 20.40 0.31 -23.05 16 7 C 0.51 19.51 6.48 87.66 0.57 20.08 16 8 O -0.56 -26.40 13.62 20.39 0.28 -26.12 16 9 N -0.60 -22.07 2.94 -818.05 -2.41 -24.48 16 10 C 0.12 4.22 6.41 86.36 0.55 4.78 16 11 C -0.12 -4.71 6.08 30.67 0.19 -4.53 16 12 C -0.11 -4.78 4.96 30.62 0.15 -4.63 16 13 C 0.04 1.71 1.93 -11.32 -0.02 1.69 16 14 H 0.00 0.08 7.29 -2.39 -0.02 0.07 16 15 C -0.53 -25.11 8.57 25.60 0.22 -24.89 16 16 H 0.07 3.05 7.74 -2.91 -0.02 3.03 16 17 C 0.02 0.82 5.30 84.66 0.45 1.27 16 18 N -0.92 -49.76 11.31 21.45 0.24 -49.51 16 19 Si 0.95 39.79 29.54 68.60 2.03 41.82 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.30 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 C 0.10 3.51 3.16 86.51 0.27 3.78 16 24 H 0.11 1.34 7.70 -2.39 -0.02 1.33 16 25 H 0.09 1.94 4.71 -2.39 -0.01 1.93 16 26 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 27 H 0.05 1.41 8.04 -2.39 -0.02 1.39 16 28 H 0.08 2.55 3.90 -2.39 -0.01 2.54 16 29 H 0.12 1.87 7.80 -2.39 -0.02 1.85 16 30 H 0.42 3.71 8.30 -92.71 -0.77 2.94 16 31 H 0.41 5.74 8.93 -92.71 -0.83 4.91 16 32 H 0.07 2.71 7.04 -2.39 -0.02 2.69 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.48 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 36 H 0.06 3.19 6.04 -2.39 -0.01 3.18 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.12 3.52 2.93 -2.39 -0.01 3.52 16 Total: -1.00 -72.57 305.91 2.49 -70.08 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.52 Total: 21.64 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.07 Total: 4.81 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -3.67 Total: -89.17 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: 0.58 Total: -49.17 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -72.57 2.49 -70.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347820284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.661 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds