Wall clock time and date at job start Mon Mar 30 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46768 * 124.34879 * 2 1 4 4 C 1.54480 * 105.55098 * 197.08340 * 3 2 1 5 5 C 1.54631 * 101.76472 * 334.54015 * 4 3 2 6 6 H 1.08995 * 110.48768 * 265.98840 * 5 4 3 7 7 C 1.50701 * 110.48626 * 143.47554 * 5 4 3 8 8 O 1.21284 * 119.99676 * 0.02562 * 7 5 4 9 9 N 1.34774 * 120.00151 * 180.02562 * 7 5 4 10 10 C 1.46497 * 120.00230 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47397 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47296 * 300.00415 * 11 10 9 13 13 C 1.53000 * 109.46786 * 60.00177 * 11 10 9 14 14 C 1.50701 * 109.47318 * 180.02562 * 11 10 9 15 15 H 1.07996 * 119.99817 * 0.02562 * 14 11 10 16 16 C 1.37871 * 119.99961 * 180.02562 * 14 11 10 17 17 N 1.31520 * 120.00496 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 120.00179 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46716 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47135 * 120.00038 * 18 16 14 21 21 H 1.48494 * 109.47133 * 240.00389 * 18 16 14 22 22 C 1.34621 * 124.47196 * 180.02562 * 2 1 3 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 2 1 24 24 H 1.08999 * 109.47246 * 89.99580 * 1 2 3 25 25 H 1.09002 * 109.46674 * 209.99895 * 1 2 3 26 26 H 1.08998 * 109.46665 * 329.99059 * 1 2 3 27 27 H 1.09002 * 110.24468 * 78.03845 * 3 2 1 28 28 H 1.09002 * 110.24463 * 316.12602 * 3 2 1 29 29 H 1.08995 * 110.97082 * 92.66028 * 4 3 2 30 30 H 1.08996 * 110.96783 * 216.38630 * 4 3 2 31 31 H 0.97003 * 119.99807 * 0.02562 * 9 7 5 32 32 H 1.08997 * 109.47361 * 300.00504 * 10 9 7 33 33 H 1.09000 * 109.46934 * 59.99859 * 10 9 7 34 34 H 1.09000 * 109.47101 * 59.99583 * 12 11 10 35 35 H 1.09004 * 109.47164 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.46949 * 299.99754 * 12 11 10 37 37 H 1.08999 * 109.47142 * 59.99983 * 13 11 10 38 38 H 1.09004 * 109.47027 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47154 * 300.00136 * 13 11 10 40 40 H 0.96998 * 120.00303 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7013 0.7510 -0.4372 5 6 3.6927 -0.7357 -0.0120 6 1 4.1256 -0.8508 0.9816 7 6 4.4435 -1.5750 -1.0135 8 8 4.9477 -1.0531 -1.9853 9 7 4.5547 -2.9054 -0.8292 10 6 5.2841 -3.7214 -1.8030 11 6 5.2613 -5.1858 -1.3604 12 6 5.9255 -5.3142 0.0119 13 6 3.8124 -5.6696 -1.2730 14 6 6.0122 -6.0251 -2.3618 15 1 6.4611 -5.5604 -3.2272 16 6 6.1260 -7.3861 -2.1732 17 7 5.5788 -7.9521 -1.1196 18 14 7.0561 -8.4266 -3.4149 19 1 7.5721 -7.5565 -4.5021 20 1 8.1933 -9.1029 -2.7409 21 1 6.1426 -9.4472 -3.9885 22 6 2.2269 -1.1098 -0.0005 23 8 1.7998 -2.2449 0.0068 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8899 0.5140 27 1 2.3309 1.6427 1.0005 28 1 1.8972 1.9391 -0.7088 29 1 3.8260 0.8476 -1.5157 30 1 4.4753 1.3048 0.0941 31 1 4.1511 -3.3228 -0.0521 32 1 4.8112 -3.6296 -2.7808 33 1 6.3164 -3.3770 -1.8650 34 1 5.3828 -4.7071 0.7365 35 1 5.9088 -6.3574 0.3275 36 1 6.9577 -4.9695 -0.0503 37 1 3.3393 -5.5781 -2.2506 38 1 3.7962 -6.7130 -0.9581 39 1 3.2697 -5.0625 -0.5484 40 1 5.6592 -8.9096 -0.9868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468844527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:03 Heat of formation + Delta-G solvation = -74.613644 kcal Electronic energy + Delta-G solvation = -21254.782911 eV Core-core repulsion = 18069.417830 eV Total energy + Delta-G solvation = -3185.365081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86594 -38.72423 -36.64083 -36.15631 -33.23961 -32.87300 -30.79326 -28.22549 -26.94342 -25.61838 -25.49128 -24.78252 -22.29389 -20.59372 -19.44376 -18.69206 -17.42677 -16.93818 -16.32321 -15.70984 -15.30835 -14.91840 -14.59565 -14.43177 -13.92741 -13.59588 -13.49290 -12.91228 -12.87246 -12.68459 -12.55920 -12.28652 -12.13043 -11.84377 -11.29819 -11.24165 -11.11131 -10.81551 -10.60961 -10.29919 -10.14828 -9.94239 -9.56385 -9.53946 -9.20185 -8.90790 -8.69561 -8.39613 -8.24735 -5.95481 -4.05689 2.35963 2.72653 3.10431 3.31120 3.39369 3.43857 3.72052 4.15689 4.30522 4.45213 4.76243 4.79478 5.00992 5.11703 5.15139 5.30899 5.32080 5.39735 5.51238 5.66068 5.95301 6.28653 6.30681 6.39130 6.60482 6.83393 6.85568 6.96605 7.02917 7.11090 7.14587 7.45382 7.65591 7.76128 8.01440 8.09667 8.10960 8.22654 8.45362 8.68768 8.95110 9.59708 11.05842 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036215 B = 0.004380 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.978078 B = 6391.368438 C = 6752.742034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.626 5.626 3 C 0.102 3.898 4 C -0.116 4.116 5 C -0.151 4.151 6 H 0.132 0.868 7 C 0.521 3.479 8 O -0.549 6.549 9 N -0.700 5.700 10 C 0.131 3.869 11 C 0.055 3.945 12 C -0.130 4.130 13 C -0.131 4.131 14 C -0.504 4.504 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.525 3.475 23 O -0.508 6.508 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.404 0.596 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.006 0.994 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.024 0.976 38 H 0.084 0.916 39 H 0.012 0.988 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 17.446 5.981 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.362 5.362 3 C -0.021 4.021 4 C -0.154 4.154 5 C -0.175 4.175 6 H 0.149 0.851 7 C 0.304 3.696 8 O -0.429 6.429 9 N -0.350 5.350 10 C 0.009 3.991 11 C 0.054 3.946 12 C -0.188 4.188 13 C -0.189 4.189 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.311 3.689 23 O -0.382 6.382 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.240 0.760 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.102 0.898 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.402 16.975 5.364 19.280 hybrid contribution 0.230 -0.714 -0.199 0.776 sum -7.172 16.261 5.164 18.507 Atomic orbital electron populations 1.21537 0.77760 1.03091 1.02016 1.48135 1.06515 1.07246 1.74289 1.22159 0.90727 0.87365 1.01810 1.22579 0.95962 0.92109 1.04746 1.22180 0.94863 0.97865 1.02620 0.85063 1.19639 0.80757 0.83154 0.86045 1.90660 1.49236 1.72430 1.30526 1.46283 1.54168 1.06500 1.28022 1.21755 0.94473 0.92295 0.90572 1.18368 0.93953 0.87962 0.94272 1.21823 0.97415 1.02985 0.96558 1.21811 0.95955 1.03233 0.97856 1.21024 1.33602 0.92075 1.07589 0.92432 1.24884 0.95447 0.97781 0.95439 1.69831 1.44526 1.10690 1.27322 0.86523 0.79587 0.80312 0.81500 1.19790 1.21101 1.21096 1.20450 0.88023 0.84681 0.75714 1.90805 1.78048 1.20526 1.48820 0.92536 0.90523 0.91026 0.90912 0.90117 0.88003 0.88669 0.75958 0.92750 0.92591 0.97491 0.89596 0.95489 0.95638 0.89754 0.96866 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.97 59.85 0.66 1.49 16 2 N -0.63 -6.79 3.34 -180.22 -0.60 -7.40 16 3 C 0.10 0.78 7.34 -3.12 -0.02 0.75 16 4 C -0.12 -1.12 6.48 -25.10 -0.16 -1.28 16 5 C -0.15 -1.96 3.33 -91.78 -0.31 -2.26 16 6 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 7 C 0.52 9.34 7.12 -10.99 -0.08 9.26 16 8 O -0.55 -11.31 15.49 5.55 0.09 -11.22 16 9 N -0.70 -13.66 4.69 -60.30 -0.28 -13.94 16 10 C 0.13 2.95 4.50 -4.04 -0.02 2.94 16 11 C 0.06 1.35 0.50 -155.66 -0.08 1.27 16 12 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 13 C -0.13 -3.22 8.08 37.16 0.30 -2.92 16 14 C -0.50 -13.65 8.01 -34.44 -0.28 -13.93 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 17 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 C 0.53 7.63 7.45 -10.77 -0.08 7.55 16 23 O -0.51 -9.37 16.74 5.55 0.09 -9.28 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 1.19 7.00 -51.93 -0.36 0.83 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.40 7.69 5.69 -40.82 -0.23 7.46 16 32 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 35 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 39 H 0.01 0.29 6.86 -51.93 -0.36 -0.07 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 321.43 15.07 4.84 4.84 Total: -1.00 -32.08 321.43 -6.34 -38.42 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.12 Total: 4.45 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 0.14 Total: 1.78 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.37 Total: -45.17 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.18 Total: -20.50 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.08 -6.34 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468844527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.195 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds