Wall clock time and date at job start Mon Mar 30 2020 00:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46768 * 124.34912 * 2 1 4 4 C 1.54476 * 105.47356 * 163.25066 * 3 2 1 5 5 C 1.54628 * 101.76724 * 25.41305 * 4 3 2 6 6 H 1.08996 * 110.59997 * 93.93938 * 5 4 3 7 7 C 1.50704 * 110.48747 * 216.52293 * 5 4 3 8 8 O 1.21279 * 120.00000 * 356.23039 * 7 5 4 9 9 N 1.34778 * 120.00002 * 176.22691 * 7 5 4 10 10 C 1.46497 * 120.00090 * 180.02562 * 9 7 5 11 11 C 1.53001 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46845 * 300.00030 * 11 10 9 13 13 C 1.52992 * 109.47293 * 59.99701 * 11 10 9 14 14 C 1.50695 * 109.47153 * 180.02562 * 11 10 9 15 15 H 1.08001 * 120.00243 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00026 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00093 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00084 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46998 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46848 * 120.00203 * 18 16 14 21 21 H 1.48497 * 109.47231 * 240.00049 * 18 16 14 22 22 C 1.34424 * 124.35300 * 180.29891 * 2 1 3 23 23 O 1.21281 * 124.93585 * 0.12015 * 22 2 1 24 24 H 1.09004 * 109.46781 * 179.72825 * 1 2 3 25 25 H 1.09004 * 109.47059 * 299.72385 * 1 2 3 26 26 H 1.09000 * 109.46702 * 59.72711 * 1 2 3 27 27 H 1.09003 * 110.24577 * 282.24633 * 3 2 1 28 28 H 1.08999 * 110.24371 * 44.25013 * 3 2 1 29 29 H 1.09008 * 110.97014 * 267.29699 * 4 3 2 30 30 H 1.08999 * 111.00358 * 143.54909 * 4 3 2 31 31 H 0.97000 * 119.99858 * 0.02562 * 9 7 5 32 32 H 1.09004 * 109.47141 * 300.00275 * 10 9 7 33 33 H 1.09004 * 109.46932 * 59.99792 * 10 9 7 34 34 H 1.08996 * 109.47226 * 59.99818 * 12 11 10 35 35 H 1.09004 * 109.46927 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.46750 * 299.99805 * 12 11 10 37 37 H 1.09004 * 109.47370 * 60.00069 * 13 11 10 38 38 H 1.09004 * 109.47145 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47492 * 300.00295 * 13 11 10 40 40 H 0.96994 * 120.00236 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7027 0.7476 0.4290 5 6 3.6898 -0.7378 -0.0003 6 1 4.1163 -0.8527 -0.9968 7 6 4.4443 -1.5811 0.9951 8 8 5.0113 -1.0549 1.9291 9 7 4.4887 -2.9200 0.8474 10 6 5.2216 -3.7399 1.8153 11 6 5.1155 -5.2139 1.4190 12 6 3.6442 -5.6337 1.4055 13 6 5.7151 -5.4118 0.0255 14 6 5.8689 -6.0572 2.4151 15 1 6.3733 -5.5888 3.2473 16 6 5.9142 -7.4269 2.2640 17 7 5.3004 -7.9974 1.2503 18 14 6.8487 -8.4723 3.4982 19 1 7.4470 -7.5957 4.5369 20 1 5.9158 -9.4334 4.1396 21 1 7.9256 -9.2190 2.7997 22 6 2.2235 -1.1098 -0.0058 23 8 1.7946 -2.2442 -0.0138 24 1 -0.3633 -1.0277 -0.0049 25 1 -0.3633 0.5096 0.8925 26 1 -0.3633 0.5181 -0.8875 27 1 2.3268 1.6456 -0.9994 28 1 1.9011 1.9364 0.7136 29 1 3.8327 0.8409 1.5073 30 1 4.4754 1.3012 -0.1043 31 1 4.0354 -3.3408 0.1001 32 1 6.2698 -3.4410 1.8247 33 1 4.7946 -3.5985 2.8082 34 1 3.0989 -5.0237 0.6853 35 1 3.5687 -6.6839 1.1236 36 1 3.2170 -5.4927 2.3983 37 1 6.7633 -5.1127 0.0351 38 1 5.6391 -6.4618 -0.2570 39 1 5.1699 -4.8018 -0.6947 40 1 5.3326 -8.9609 1.1438 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468844532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:06 Heat of formation + Delta-G solvation = -74.706659 kcal Electronic energy + Delta-G solvation = -21278.303268 eV Core-core repulsion = 18092.934153 eV Total energy + Delta-G solvation = -3185.369114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88952 -38.72631 -36.65395 -36.14853 -33.23534 -32.87497 -30.78798 -28.22754 -26.94725 -25.61347 -25.48663 -24.77915 -22.29110 -20.58673 -19.44827 -18.68766 -17.41668 -16.95541 -16.33800 -15.71179 -15.31941 -14.92976 -14.60261 -14.41815 -13.90957 -13.59128 -13.51176 -12.91164 -12.86326 -12.67652 -12.52899 -12.27342 -12.12504 -11.85098 -11.29260 -11.24275 -11.10774 -10.81230 -10.60777 -10.29465 -10.14568 -9.95520 -9.56235 -9.53501 -9.19825 -8.92311 -8.69140 -8.39210 -8.24289 -5.95220 -4.05427 2.36116 2.72710 3.10482 3.31198 3.39439 3.43928 3.71923 4.14555 4.31076 4.45398 4.76621 4.78768 5.07127 5.10642 5.15245 5.30188 5.31144 5.39529 5.52106 5.66206 5.94556 6.27856 6.30879 6.39344 6.61002 6.83724 6.85650 6.97409 7.03559 7.11577 7.15370 7.45759 7.66040 7.76407 8.00877 8.10082 8.11834 8.23099 8.45721 8.69481 8.95394 9.59921 11.06116 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.004421 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.618453 B = 6332.472103 C = 6714.273995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.625 5.625 3 C 0.102 3.898 4 C -0.115 4.115 5 C -0.151 4.151 6 H 0.132 0.868 7 C 0.520 3.480 8 O -0.550 6.550 9 N -0.700 5.700 10 C 0.131 3.869 11 C 0.055 3.945 12 C -0.131 4.131 13 C -0.130 4.130 14 C -0.504 4.504 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.525 3.475 23 O -0.509 6.509 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.405 0.595 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.013 0.987 35 H 0.084 0.916 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 17.436 -6.029 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.360 5.360 3 C -0.021 4.021 4 C -0.153 4.153 5 C -0.176 4.176 6 H 0.150 0.850 7 C 0.303 3.697 8 O -0.429 6.429 9 N -0.350 5.350 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.188 4.188 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.311 3.689 23 O -0.383 6.383 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.242 0.758 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.089 16.966 -5.431 19.173 hybrid contribution 0.208 -0.707 0.200 0.763 sum -6.880 16.260 -5.231 18.414 Atomic orbital electron populations 1.21568 0.77797 1.04008 1.01366 1.48075 1.06576 1.07262 1.74122 1.22154 0.90665 0.87358 1.01875 1.22569 0.95937 0.92120 1.04683 1.22193 0.94813 0.97858 1.02687 0.84997 1.19647 0.81175 0.83232 0.85604 1.90661 1.46901 1.72651 1.32666 1.46307 1.52552 1.05708 1.30449 1.21757 0.94479 0.92232 0.90642 1.18365 0.93994 0.87879 0.94304 1.21814 0.96043 1.03263 0.97759 1.21822 0.97429 1.03132 0.96405 1.21026 1.32074 0.91332 1.09861 0.92437 1.24885 0.95378 0.97820 0.95474 1.69830 1.43102 1.10152 1.29277 0.86525 0.79641 0.80336 0.81422 1.19791 1.21103 1.21097 1.20423 0.88121 0.84708 0.75637 1.90801 1.77929 1.20568 1.49032 0.89722 0.92043 0.92065 0.90896 0.90088 0.88088 0.88642 0.75830 0.92605 0.92760 0.96796 0.89767 0.95669 0.95501 0.89594 0.97477 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.14 59.85 0.67 1.47 16 2 N -0.62 -6.76 3.33 -180.28 -0.60 -7.36 16 3 C 0.10 0.78 7.35 -3.12 -0.02 0.75 16 4 C -0.12 -1.11 6.45 -25.10 -0.16 -1.27 16 5 C -0.15 -1.96 3.33 -91.78 -0.31 -2.26 16 6 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 7 C 0.52 9.32 7.16 -10.98 -0.08 9.24 16 8 O -0.55 -11.29 15.52 5.56 0.09 -11.21 16 9 N -0.70 -13.71 4.66 -60.29 -0.28 -13.99 16 10 C 0.13 2.96 4.50 -4.04 -0.02 2.94 16 11 C 0.06 1.36 0.50 -155.66 -0.08 1.28 16 12 C -0.13 -3.24 8.08 37.16 0.30 -2.93 16 13 C -0.13 -3.08 8.08 37.15 0.30 -2.78 16 14 C -0.50 -13.67 8.01 -34.44 -0.28 -13.95 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 17 N -0.88 -24.38 9.35 55.43 0.52 -23.86 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.53 7.58 7.44 -10.86 -0.08 7.50 16 23 O -0.51 -9.31 16.17 5.56 0.09 -9.22 16 24 H 0.08 0.86 7.53 -51.93 -0.39 0.47 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 1.18 7.06 -51.92 -0.37 0.81 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.41 7.79 5.37 -40.82 -0.22 7.57 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.01 0.31 6.86 -51.93 -0.36 -0.05 16 35 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 39 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -31.95 320.39 -6.32 -38.26 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.09 Total: 4.68 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 0.15 Total: 1.67 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.36 Total: -45.21 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.18 Total: -20.42 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.95 -6.32 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468844532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.443 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds