Wall clock time and date at job start Mon Mar 30 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00287 * 2 1 4 4 C 1.52997 * 109.46972 * 239.99949 * 3 2 1 5 5 O 1.42909 * 109.46928 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47214 * 119.99441 * 3 2 1 7 7 C 1.50702 * 109.46894 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00261 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00029 * 179.97438 * 7 6 3 10 10 C 1.46500 * 120.00218 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.63816 * 323.31858 * 10 9 7 12 12 C 1.55156 * 110.72120 * 199.97861 * 10 9 7 13 13 C 1.54913 * 101.58503 * 277.14325 * 12 10 9 14 14 N 1.47426 * 104.82654 * 322.99068 * 13 12 10 15 15 C 1.36942 * 125.64357 * 204.09563 * 14 13 12 16 16 H 1.08008 * 119.99834 * 169.98857 * 15 14 13 17 17 C 1.38814 * 120.00326 * 349.98467 * 15 14 13 18 18 N 1.31618 * 119.99750 * 350.41844 * 17 15 14 19 19 Si 1.86798 * 120.00178 * 170.42315 * 17 15 14 20 20 H 1.48507 * 109.46921 * 94.14029 * 19 17 15 21 21 H 1.48496 * 109.46936 * 214.13680 * 19 17 15 22 22 H 1.48494 * 109.47062 * 334.13987 * 19 17 15 23 23 C 1.47019 * 108.70890 * 24.12685 * 14 13 12 24 24 H 1.08003 * 119.99507 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.00369 * 179.72224 * 1 2 3 26 26 H 1.07997 * 120.00180 * 179.97438 * 2 1 3 27 27 H 1.08991 * 109.47438 * 59.99750 * 4 3 2 28 28 H 1.09005 * 109.46735 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47029 * 299.99695 * 4 3 2 30 30 H 0.96699 * 113.99389 * 60.00255 * 5 3 2 31 31 H 1.08999 * 109.47199 * 299.99725 * 6 3 2 32 32 H 1.09000 * 109.46957 * 60.00201 * 6 3 2 33 33 H 0.97005 * 119.99780 * 0.02562 * 9 7 6 34 34 H 1.09001 * 111.00590 * 35.21654 * 12 10 9 35 35 H 1.09004 * 111.00320 * 159.06364 * 12 10 9 36 36 H 1.08995 * 110.36503 * 204.15698 * 13 12 10 37 37 H 1.08999 * 110.46285 * 81.87322 * 13 12 10 38 38 H 0.97001 * 119.99906 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.88594 * 239.52505 * 23 14 13 40 40 H 1.08998 * 109.87860 * 118.35644 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9432 1.3860 -1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3862 1.2493 7 6 3.6971 2.6910 1.2489 8 8 3.5456 3.4787 0.3392 9 7 4.5391 2.9831 2.2599 10 6 5.2717 4.2517 2.2599 11 1 5.5670 4.5248 1.2468 12 6 6.5083 4.1717 3.1936 13 6 5.8732 4.4617 4.5765 14 7 4.8360 5.4751 4.3102 15 6 4.3373 6.3655 5.2233 16 1 3.6990 7.1733 4.8968 17 6 4.6520 6.2299 6.5685 18 7 5.2687 5.1479 6.9942 19 14 4.2001 7.5830 7.7745 20 1 2.8873 7.2738 8.3961 21 1 5.2396 7.6716 8.8312 22 1 4.1140 8.8790 7.0548 23 6 4.4254 5.3709 2.9024 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5400 -0.9352 -0.0045 26 1 1.8500 -0.9353 0.0004 27 1 2.3166 1.3283 -2.1392 28 1 3.4886 2.3298 -1.2490 29 1 3.6515 0.5575 -1.2492 30 1 0.5434 2.4034 0.7643 31 1 2.3164 1.3286 2.1392 32 1 3.6514 0.5577 1.2494 33 1 4.6600 2.3532 2.9877 34 1 6.9528 3.1767 3.1688 35 1 7.2438 4.9330 2.9340 36 1 6.6223 4.8568 5.2625 37 1 5.4236 3.5574 4.9866 38 1 5.4882 5.0529 7.9343 39 1 4.6107 6.3156 2.3913 40 1 3.3673 5.1161 2.8429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481701025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:36 Heat of formation + Delta-G solvation = -38.784610 kcal Electronic energy + Delta-G solvation = -21046.384686 eV Core-core repulsion = 17862.573269 eV Total energy + Delta-G solvation = -3183.811418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03363 -38.26993 -36.89400 -33.74951 -33.06724 -31.90968 -31.19336 -29.25535 -28.16467 -26.87766 -24.44916 -22.94434 -20.58149 -20.23894 -19.74945 -19.67346 -17.38520 -16.81720 -16.42889 -15.84121 -15.50911 -15.02546 -14.65167 -14.49432 -13.80942 -13.59667 -13.40327 -12.86185 -12.58875 -12.34232 -12.18475 -12.03133 -11.65864 -11.64670 -11.53849 -11.14574 -11.04593 -10.84081 -10.73183 -10.37976 -10.22866 -10.08046 -9.99580 -9.68577 -9.62906 -9.27551 -8.62014 -8.54418 -6.80324 -5.76290 -3.07532 2.01140 2.95509 3.39151 3.45240 3.47652 3.49355 4.22873 4.49903 4.60882 4.67828 4.90986 5.06377 5.16648 5.37220 5.41688 5.44819 5.49949 5.60288 5.61910 5.76443 5.82753 5.85908 6.00342 6.23986 6.29298 6.34870 6.40105 6.46249 6.52765 6.64079 6.76982 7.11174 7.43893 7.52099 7.67944 7.75896 7.88915 8.25150 8.60069 9.19180 9.80905 10.48297 11.37291 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.028543 B = 0.004194 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.731797 B = 6674.156514 C = 7064.061219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C 0.178 3.822 4 C -0.146 4.146 5 O -0.538 6.538 6 C -0.167 4.167 7 C 0.513 3.487 8 O -0.525 6.525 9 N -0.714 5.714 10 C 0.134 3.866 11 H 0.086 0.914 12 C -0.155 4.155 13 C 0.173 3.827 14 N -0.603 5.603 15 C -0.226 4.226 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.128 3.872 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.369 0.631 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.252 0.748 39 H 0.030 0.970 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -12.166 -11.597 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.204 4.204 3 C 0.136 3.864 4 C -0.203 4.203 5 O -0.342 6.342 6 C -0.207 4.207 7 C 0.298 3.702 8 O -0.401 6.401 9 N -0.365 5.365 10 C 0.029 3.971 11 H 0.104 0.896 12 C -0.194 4.194 13 C 0.048 3.952 14 N -0.329 5.329 15 C -0.355 4.355 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.001 3.999 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.133 0.867 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.216 0.784 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.960 -11.394 -12.601 17.245 hybrid contribution -0.556 -0.001 1.795 1.879 sum -3.516 -11.395 -10.807 16.093 Atomic orbital electron populations 1.23868 0.96078 1.02354 0.99666 1.23641 0.96765 0.98865 1.01152 1.19830 0.88040 0.83942 0.94586 1.21933 0.98822 1.04357 0.95218 1.86722 1.50036 1.48875 1.48612 1.22394 1.00496 0.97237 1.00606 1.20306 0.79539 0.88169 0.82159 1.90659 1.63736 1.50051 1.35656 1.46037 1.44697 1.21046 1.24743 1.21922 0.92301 0.83562 0.99322 0.89558 1.23323 0.96104 1.00990 0.98958 1.21401 0.91138 0.92007 0.90679 1.44499 1.43563 1.39631 1.05246 1.19048 1.25698 1.03889 0.86850 0.90679 1.24792 1.01364 0.97631 0.96618 1.69943 1.46518 1.26027 1.14332 0.86129 0.77503 0.81404 0.80904 1.21667 1.21621 1.20584 1.21684 0.96353 0.95054 0.86827 0.87668 0.88340 0.86749 0.92409 0.88572 0.92067 0.78380 0.88716 0.88294 0.76731 0.91647 0.90695 0.91202 0.95723 0.93789 0.95226 0.95577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 13.93 29.01 0.40 -1.17 16 2 C -0.19 -1.71 8.77 -36.03 -0.32 -2.03 16 3 C 0.18 2.03 0.94 -91.77 -0.09 1.95 16 4 C -0.15 -1.76 8.50 37.16 0.32 -1.44 16 5 O -0.54 -7.23 10.85 -53.48 -0.58 -7.81 16 6 C -0.17 -1.85 4.93 -27.88 -0.14 -1.98 16 7 C 0.51 7.78 7.38 -10.99 -0.08 7.70 16 8 O -0.52 -9.72 12.68 -12.69 -0.16 -9.89 16 9 N -0.71 -11.06 5.11 -52.03 -0.27 -11.33 16 10 C 0.13 2.39 3.25 -66.09 -0.21 2.18 16 11 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 12 C -0.15 -2.73 6.64 -24.58 -0.16 -2.90 16 13 C 0.17 4.00 5.40 -2.53 -0.01 3.98 16 14 N -0.60 -15.41 3.39 -170.07 -0.58 -15.99 16 15 C -0.23 -6.38 10.24 -15.06 -0.15 -6.53 16 16 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 17 C -0.01 -0.22 5.40 -17.43 -0.09 -0.31 16 18 N -0.92 -26.61 10.68 55.49 0.59 -26.02 16 19 Si 0.91 22.09 29.56 -169.99 -5.03 17.06 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.13 2.81 6.98 -3.06 -0.02 2.79 16 24 H 0.11 0.92 6.41 -52.48 -0.34 0.59 16 25 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 26 H 0.11 0.87 8.06 -52.49 -0.42 0.45 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 1.43 5.51 -51.93 -0.29 1.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.37 3.87 8.05 45.56 0.37 4.24 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.40 5.57 8.62 -40.82 -0.35 5.22 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.81 6.94 -51.93 -0.36 1.45 16 37 H 0.02 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -32.82 324.58 -7.24 -40.07 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.56 Total: 6.78 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.56 Total: 2.23 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.25 Total: -53.34 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.74 Total: -17.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.82 -7.24 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481701025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.283 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds