Wall clock time and date at job start Mon Mar 30 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00287 * 2 1 4 4 C 1.52997 * 109.46972 * 239.99949 * 3 2 1 5 5 O 1.42909 * 109.46928 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47214 * 119.99441 * 3 2 1 7 7 C 1.50702 * 109.46894 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00261 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00029 * 179.97438 * 7 6 3 10 10 C 1.46500 * 120.00218 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.63816 * 323.31858 * 10 9 7 12 12 C 1.55156 * 110.72120 * 199.97861 * 10 9 7 13 13 C 1.54913 * 101.58503 * 277.14325 * 12 10 9 14 14 N 1.47426 * 104.82654 * 322.99068 * 13 12 10 15 15 C 1.36942 * 125.64357 * 204.09563 * 14 13 12 16 16 H 1.08008 * 119.99834 * 169.98857 * 15 14 13 17 17 C 1.38814 * 120.00326 * 349.98467 * 15 14 13 18 18 N 1.31618 * 119.99750 * 350.41844 * 17 15 14 19 19 Si 1.86798 * 120.00178 * 170.42315 * 17 15 14 20 20 H 1.48507 * 109.46921 * 94.14029 * 19 17 15 21 21 H 1.48496 * 109.46936 * 214.13680 * 19 17 15 22 22 H 1.48494 * 109.47062 * 334.13987 * 19 17 15 23 23 C 1.47019 * 108.70890 * 24.12685 * 14 13 12 24 24 H 1.08003 * 119.99507 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.00369 * 179.72224 * 1 2 3 26 26 H 1.07997 * 120.00180 * 179.97438 * 2 1 3 27 27 H 1.08991 * 109.47438 * 59.99750 * 4 3 2 28 28 H 1.09005 * 109.46735 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47029 * 299.99695 * 4 3 2 30 30 H 0.96699 * 113.99389 * 60.00255 * 5 3 2 31 31 H 1.08999 * 109.47199 * 299.99725 * 6 3 2 32 32 H 1.09000 * 109.46957 * 60.00201 * 6 3 2 33 33 H 0.97005 * 119.99780 * 0.02562 * 9 7 6 34 34 H 1.09001 * 111.00590 * 35.21654 * 12 10 9 35 35 H 1.09004 * 111.00320 * 159.06364 * 12 10 9 36 36 H 1.08995 * 110.36503 * 204.15698 * 13 12 10 37 37 H 1.08999 * 110.46285 * 81.87322 * 13 12 10 38 38 H 0.97001 * 119.99906 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.88594 * 239.52505 * 23 14 13 40 40 H 1.08998 * 109.87860 * 118.35644 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9432 1.3860 -1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3862 1.2493 7 6 3.6971 2.6910 1.2489 8 8 3.5456 3.4787 0.3392 9 7 4.5391 2.9831 2.2599 10 6 5.2717 4.2517 2.2599 11 1 5.5670 4.5248 1.2468 12 6 6.5083 4.1717 3.1936 13 6 5.8732 4.4617 4.5765 14 7 4.8360 5.4751 4.3102 15 6 4.3373 6.3655 5.2233 16 1 3.6990 7.1733 4.8968 17 6 4.6520 6.2299 6.5685 18 7 5.2687 5.1479 6.9942 19 14 4.2001 7.5830 7.7745 20 1 2.8873 7.2738 8.3961 21 1 5.2396 7.6716 8.8312 22 1 4.1140 8.8790 7.0548 23 6 4.4254 5.3709 2.9024 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5400 -0.9352 -0.0045 26 1 1.8500 -0.9353 0.0004 27 1 2.3166 1.3283 -2.1392 28 1 3.4886 2.3298 -1.2490 29 1 3.6515 0.5575 -1.2492 30 1 0.5434 2.4034 0.7643 31 1 2.3164 1.3286 2.1392 32 1 3.6514 0.5577 1.2494 33 1 4.6600 2.3532 2.9877 34 1 6.9528 3.1767 3.1688 35 1 7.2438 4.9330 2.9340 36 1 6.6223 4.8568 5.2625 37 1 5.4236 3.5574 4.9866 38 1 5.4882 5.0529 7.9343 39 1 4.6107 6.3156 2.3913 40 1 3.3673 5.1161 2.8429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481701025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:36 Heat of formation + Delta-G solvation = -62.308269 kcal Electronic energy + Delta-G solvation = -21047.404748 eV Core-core repulsion = 17862.573269 eV Total energy + Delta-G solvation = -3184.831480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20961 -39.52499 -38.30138 -35.40738 -33.96425 -33.61048 -32.13348 -30.99378 -29.47242 -28.33605 -26.38631 -23.88789 -22.15314 -21.78857 -21.13394 -20.53200 -18.94088 -18.22130 -17.63539 -16.94548 -16.76082 -16.59522 -16.07033 -15.78936 -15.39084 -15.03647 -14.68750 -14.28538 -13.86266 -13.76889 -13.41213 -13.16882 -13.09119 -13.00249 -12.78177 -12.62345 -12.43930 -12.26522 -12.13324 -11.98498 -11.91770 -11.86530 -11.60691 -11.14333 -10.68743 -10.52464 -10.29011 -9.93956 -8.86858 -7.90392 -5.23751 1.33943 1.45588 1.46486 1.56515 1.77841 2.31251 2.48799 3.29329 3.38677 3.65195 3.74386 3.80499 3.83168 4.06012 4.11040 4.27217 4.33114 4.43012 4.63027 4.65280 4.73096 4.76961 4.90355 4.92923 4.96288 5.04421 5.06542 5.18424 5.41113 5.43067 5.59048 5.66622 5.70268 5.73745 5.85376 6.19648 6.68908 6.86012 7.08470 7.41335 7.74593 8.40618 9.21320 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.028543 B = 0.004194 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.731797 B = 6674.156514 C = 7064.061219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.188 4.188 3 C 0.172 3.828 4 C -0.146 4.146 5 O -0.564 6.564 6 C -0.158 4.158 7 C 0.509 3.491 8 O -0.561 6.561 9 N -0.711 5.711 10 C 0.148 3.852 11 H 0.095 0.905 12 C -0.133 4.133 13 C 0.178 3.822 14 N -0.621 5.621 15 C -0.250 4.250 16 H 0.069 0.931 17 C -0.055 4.055 18 N -0.942 5.942 19 Si 0.975 3.025 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.127 3.873 24 H 0.098 0.902 25 H 0.117 0.883 26 H 0.137 0.863 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.378 0.622 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.408 0.592 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.009 0.991 38 H 0.250 0.750 39 H 0.023 0.977 40 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 -13.826 -11.880 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.206 4.206 3 C 0.131 3.869 4 C -0.203 4.203 5 O -0.371 6.371 6 C -0.198 4.198 7 C 0.297 3.703 8 O -0.439 6.439 9 N -0.363 5.363 10 C 0.042 3.958 11 H 0.113 0.887 12 C -0.171 4.171 13 C 0.053 3.947 14 N -0.348 5.348 15 C -0.379 4.379 16 H 0.087 0.913 17 C -0.249 4.249 18 N -0.590 5.590 19 Si 0.803 3.197 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.199 1.199 23 C 0.000 4.000 24 H 0.116 0.884 25 H 0.135 0.865 26 H 0.155 0.845 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.226 0.774 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.244 0.756 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.027 0.973 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -2.885 -13.078 -12.893 18.590 hybrid contribution -0.636 0.539 1.849 2.028 sum -3.521 -12.540 -11.044 17.076 Atomic orbital electron populations 1.24028 0.96140 1.02923 0.98771 1.23599 0.96834 0.98289 1.01891 1.19964 0.87983 0.84637 0.94341 1.21915 0.99120 1.03673 0.95580 1.86692 1.50747 1.50230 1.49450 1.22421 1.00753 0.95607 1.01010 1.21060 0.78907 0.89215 0.81119 1.90661 1.64691 1.51595 1.36968 1.45998 1.44750 1.20194 1.25347 1.21649 0.91589 0.83412 0.99134 0.88727 1.23168 0.95795 1.03313 0.94843 1.21257 0.89897 0.90407 0.93151 1.44768 1.44265 1.39636 1.06145 1.19339 1.26040 1.04608 0.87944 0.91273 1.25556 1.01570 0.99746 0.98052 1.70111 1.47172 1.27368 1.14369 0.85134 0.77084 0.78971 0.78524 1.21310 1.21453 1.19877 1.21769 0.96020 0.96617 0.85578 0.88424 0.86517 0.84535 0.92852 0.91673 0.89528 0.77386 0.87445 0.84994 0.75621 0.87991 0.89895 0.94548 0.97318 0.94097 0.95868 0.97565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 13.93 67.78 0.94 -1.77 16 2 C -0.19 -2.93 8.77 25.65 0.22 -2.70 16 3 C 0.17 3.63 0.94 -11.54 -0.01 3.62 16 4 C -0.15 -3.31 8.50 71.98 0.61 -2.70 16 5 O -0.56 -14.96 10.85 -131.53 -1.43 -16.39 16 6 C -0.16 -3.10 4.93 29.85 0.15 -2.95 16 7 C 0.51 14.77 7.38 87.66 0.65 15.42 16 8 O -0.56 -20.67 12.68 14.40 0.18 -20.49 16 9 N -0.71 -20.89 5.11 -436.91 -2.23 -23.13 16 10 C 0.15 5.13 3.25 46.18 0.15 5.28 16 11 H 0.09 3.20 7.69 -2.39 -0.02 3.18 16 12 C -0.13 -4.44 6.64 31.99 0.21 -4.23 16 13 C 0.18 8.24 5.40 86.86 0.47 8.71 16 14 N -0.62 -32.28 3.39 -691.98 -2.35 -34.63 16 15 C -0.25 -14.37 10.24 84.03 0.86 -13.51 16 16 H 0.07 3.93 7.85 -2.91 -0.02 3.90 16 17 C -0.06 -3.13 5.40 84.86 0.46 -2.67 16 18 N -0.94 -55.14 10.68 21.65 0.23 -54.91 16 19 Si 0.97 45.73 29.56 68.60 2.03 47.75 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.13 5.65 6.98 86.73 0.61 6.25 16 24 H 0.10 1.59 6.41 -2.91 -0.02 1.57 16 25 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 26 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.92 5.51 -2.38 -0.01 1.90 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.38 7.83 8.05 -74.06 -0.60 7.24 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.41 10.51 8.62 -92.70 -0.80 9.71 16 34 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 36 H 0.04 1.92 6.94 -2.39 -0.02 1.90 16 37 H 0.01 0.43 8.07 -2.39 -0.02 0.41 16 38 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.01 0.30 8.04 -2.39 -0.02 0.29 16 Total: -1.00 -72.44 324.58 1.40 -71.05 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.36 Total: 22.00 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.32 Total: 8.75 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.35 Total: -112.67 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.24 Total: -36.88 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.44 1.40 -71.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481701025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.740 kcal (2) G-P(sol) polarization free energy of solvation -72.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds