Wall clock time and date at job start Mon Mar 30 2020 01:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 120.00218 * 2 1 4 4 C 1.52999 * 109.47218 * 240.00544 * 3 2 1 5 5 O 1.42903 * 109.46442 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47316 * 120.00113 * 3 2 1 7 7 C 1.50701 * 109.46986 * 180.02562 * 6 3 2 8 8 O 1.21276 * 119.99872 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99733 * 180.02562 * 7 6 3 10 10 C 1.47421 * 125.64842 * 359.68311 * 9 7 6 11 11 C 1.55141 * 104.72324 * 155.82179 * 10 9 7 12 12 C 1.55158 * 101.48179 * 37.29635 * 11 10 9 13 13 H 1.09000 * 110.72147 * 82.69450 * 12 11 10 14 14 N 1.46495 * 110.71947 * 205.97067 * 12 11 10 15 15 C 1.36937 * 119.99789 * 268.52352 * 14 12 11 16 16 H 1.08002 * 120.00653 * 0.02562 * 15 14 12 17 17 C 1.38819 * 119.99629 * 179.97438 * 15 14 12 18 18 N 1.31613 * 120.00259 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46560 * 90.00551 * 19 17 15 21 21 H 1.48497 * 109.46989 * 210.00525 * 19 17 15 22 22 H 1.48499 * 109.47172 * 330.00960 * 19 17 15 23 23 C 1.47021 * 125.64577 * 179.97438 * 9 7 6 24 24 H 1.07997 * 120.00143 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00089 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00596 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46848 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.46819 * 299.99633 * 4 3 2 29 29 H 1.08997 * 109.47286 * 59.99747 * 4 3 2 30 30 H 0.96700 * 114.00311 * 60.00230 * 5 3 2 31 31 H 1.08999 * 109.47164 * 300.00418 * 6 3 2 32 32 H 1.08997 * 109.47124 * 60.00119 * 6 3 2 33 33 H 1.08998 * 110.37290 * 274.75217 * 10 9 7 34 34 H 1.09004 * 110.37111 * 37.07344 * 10 9 7 35 35 H 1.08992 * 111.18972 * 279.19389 * 11 10 9 36 36 H 1.08997 * 110.93880 * 155.28568 * 11 10 9 37 37 H 0.96999 * 120.00029 * 88.52231 * 14 12 11 38 38 H 0.96999 * 119.99931 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.88245 * 300.43262 * 23 9 7 40 40 H 1.08999 * 109.88712 * 61.44685 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1348 2.3912 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6963 2.6916 1.2495 8 8 3.5447 3.4792 0.3398 9 7 4.5389 2.9831 2.2600 10 6 4.8124 2.1234 3.4259 11 6 6.2168 2.5616 3.9183 12 6 6.1629 4.0940 3.6809 13 1 5.6609 4.5951 4.5086 14 7 7.5099 4.6358 3.4855 15 6 8.2230 5.1012 4.5579 16 1 7.7926 5.0684 5.5479 17 6 9.4996 5.6141 4.3727 18 7 10.0243 5.6536 3.1664 19 14 10.4720 6.2496 5.8356 20 1 11.2709 5.1414 6.4179 21 1 11.3821 7.3355 5.3910 22 1 9.5361 6.7768 6.8609 23 6 5.3331 4.2140 2.3853 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 3.4877 2.3304 -1.2495 28 1 3.6514 0.5578 -1.2493 29 1 2.3164 1.3285 -2.1392 30 1 0.5438 2.4030 0.7659 31 1 2.3166 1.3284 2.1392 32 1 3.6515 0.5577 1.2492 33 1 4.0665 2.2895 4.2031 34 1 4.8251 1.0745 3.1293 35 1 7.0046 2.1014 3.3221 36 1 6.3470 2.3345 4.9763 37 1 7.8967 4.6649 2.5964 38 1 10.9162 6.0124 3.0370 39 1 5.9977 4.3153 1.5273 40 1 4.6712 5.0779 2.4452 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491721298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:23 Heat of formation + Delta-G solvation = -46.000256 kcal Electronic energy + Delta-G solvation = -20713.513699 eV Core-core repulsion = 17529.389387 eV Total energy + Delta-G solvation = -3184.124311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18552 -38.47622 -36.92112 -34.13373 -33.17016 -31.76021 -31.19840 -29.55362 -28.63851 -27.06478 -23.88523 -22.98663 -22.39265 -20.10306 -19.82529 -19.05989 -17.45699 -17.22951 -16.63216 -15.99397 -15.75116 -14.98363 -14.66441 -14.43210 -14.23651 -13.50762 -13.32656 -13.11223 -12.68769 -12.48579 -12.36608 -12.19686 -12.06754 -11.70828 -11.69084 -11.44653 -11.22396 -11.18502 -10.86987 -10.72413 -10.37869 -10.28952 -10.10595 -9.78468 -9.70389 -9.38117 -8.98793 -8.34616 -7.06626 -5.83864 -3.14642 1.92607 2.83425 3.17424 3.39570 3.44958 3.46846 4.10904 4.42871 4.53028 4.58087 4.80539 4.88619 4.97820 5.02878 5.28235 5.32387 5.39255 5.50629 5.54828 5.56397 5.57842 5.76084 5.78830 5.93567 5.97115 6.12367 6.21798 6.26091 6.34333 6.37150 6.48249 6.58270 6.62242 6.88165 7.56795 7.63176 7.77950 8.33242 8.41697 9.44911 9.99311 10.33945 11.38305 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.050149 B = 0.003434 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.198446 B = 8151.880996 C = 8362.442546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.176 3.824 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.160 4.160 7 C 0.524 3.476 8 O -0.523 6.523 9 N -0.616 5.616 10 C 0.098 3.902 11 C -0.155 4.155 12 C 0.172 3.828 13 H 0.066 0.934 14 N -0.715 5.715 15 C -0.246 4.246 16 H 0.073 0.927 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.100 3.900 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.367 0.633 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.069 0.931 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.016 -13.128 -2.410 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.203 4.203 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.342 6.342 6 C -0.200 4.200 7 C 0.312 3.688 8 O -0.399 6.399 9 N -0.351 5.351 10 C -0.025 4.025 11 C -0.196 4.196 12 C 0.060 3.940 13 H 0.084 0.916 14 N -0.355 5.355 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.023 4.023 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.214 0.786 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.743 -12.474 -3.376 21.150 hybrid contribution 0.485 -0.081 1.185 1.283 sum -16.258 -12.554 -2.192 20.658 Atomic orbital electron populations 1.23858 0.96030 1.02338 0.99791 1.23638 0.96753 0.98854 1.01031 1.19872 0.87978 0.83933 0.94717 1.21946 0.98841 1.04554 0.95142 1.86739 1.50049 1.48968 1.48461 1.22355 1.00245 0.97123 1.00308 1.20014 0.79222 0.88348 0.81187 1.90680 1.64246 1.50226 1.34787 1.48546 1.43207 1.20924 1.22408 1.22424 0.98330 0.94152 0.87615 1.23608 0.94057 1.00536 1.01443 1.21184 0.87439 0.91669 0.93737 0.91595 1.42367 1.11561 1.73048 1.08565 1.19226 0.96497 1.33650 0.88330 0.90953 1.24783 0.97602 1.01649 0.96629 1.69663 1.16765 1.51350 1.19934 0.86168 0.79939 0.78266 0.81643 1.21647 1.21709 1.20669 1.22320 0.93983 0.85856 1.00142 0.87719 0.88284 0.86650 0.88571 0.91873 0.92281 0.78616 0.88960 0.88197 0.91769 0.91499 0.90659 0.90615 0.77929 0.93326 0.91238 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 13.93 29.02 0.40 -0.98 16 2 C -0.18 -1.55 8.77 -36.02 -0.32 -1.87 16 3 C 0.18 1.92 0.94 -91.77 -0.09 1.83 16 4 C -0.15 -1.80 8.51 37.16 0.32 -1.49 16 5 O -0.54 -6.63 10.84 -53.50 -0.58 -7.21 16 6 C -0.16 -1.68 3.93 -27.88 -0.11 -1.79 16 7 C 0.52 7.88 7.41 -10.99 -0.08 7.80 16 8 O -0.52 -9.80 13.29 -12.71 -0.17 -9.97 16 9 N -0.62 -9.32 3.32 -170.38 -0.57 -9.89 16 10 C 0.10 1.22 6.70 -2.41 -0.02 1.21 16 11 C -0.16 -2.45 6.78 -24.46 -0.17 -2.61 16 12 C 0.17 3.25 3.61 -66.09 -0.24 3.01 16 13 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 14 N -0.72 -17.38 5.22 -51.65 -0.27 -17.65 16 15 C -0.25 -6.60 9.96 -15.06 -0.15 -6.75 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 19 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.10 1.79 6.62 -3.06 -0.02 1.77 16 24 H 0.10 0.79 6.41 -52.49 -0.34 0.45 16 25 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 26 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 27 H 0.10 1.48 5.51 -51.93 -0.29 1.20 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.37 3.19 8.05 45.56 0.37 3.56 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.88 7.85 -51.93 -0.41 0.48 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.39 10.13 7.56 -40.82 -0.31 9.82 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 39 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -32.31 327.19 -7.05 -39.35 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.53 Total: 10.77 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.56 Total: -0.24 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.11 Total: -54.47 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.75 Total: -17.19 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.31 -7.05 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491721298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.648 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds