Wall clock time and date at job start Mon Mar 30 2020 01:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 120.00218 * 2 1 4 4 C 1.52999 * 109.47218 * 240.00544 * 3 2 1 5 5 O 1.42903 * 109.46442 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47316 * 120.00113 * 3 2 1 7 7 C 1.50701 * 109.46986 * 180.02562 * 6 3 2 8 8 O 1.21276 * 119.99872 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99733 * 180.02562 * 7 6 3 10 10 C 1.47421 * 125.64842 * 359.68311 * 9 7 6 11 11 C 1.55141 * 104.72324 * 155.82179 * 10 9 7 12 12 C 1.55158 * 101.48179 * 37.29635 * 11 10 9 13 13 H 1.09000 * 110.72147 * 82.69450 * 12 11 10 14 14 N 1.46495 * 110.71947 * 205.97067 * 12 11 10 15 15 C 1.36937 * 119.99789 * 268.52352 * 14 12 11 16 16 H 1.08002 * 120.00653 * 0.02562 * 15 14 12 17 17 C 1.38819 * 119.99629 * 179.97438 * 15 14 12 18 18 N 1.31613 * 120.00259 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46560 * 90.00551 * 19 17 15 21 21 H 1.48497 * 109.46989 * 210.00525 * 19 17 15 22 22 H 1.48499 * 109.47172 * 330.00960 * 19 17 15 23 23 C 1.47021 * 125.64577 * 179.97438 * 9 7 6 24 24 H 1.07997 * 120.00143 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00089 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00596 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46848 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.46819 * 299.99633 * 4 3 2 29 29 H 1.08997 * 109.47286 * 59.99747 * 4 3 2 30 30 H 0.96700 * 114.00311 * 60.00230 * 5 3 2 31 31 H 1.08999 * 109.47164 * 300.00418 * 6 3 2 32 32 H 1.08997 * 109.47124 * 60.00119 * 6 3 2 33 33 H 1.08998 * 110.37290 * 274.75217 * 10 9 7 34 34 H 1.09004 * 110.37111 * 37.07344 * 10 9 7 35 35 H 1.08992 * 111.18972 * 279.19389 * 11 10 9 36 36 H 1.08997 * 110.93880 * 155.28568 * 11 10 9 37 37 H 0.96999 * 120.00029 * 88.52231 * 14 12 11 38 38 H 0.96999 * 119.99931 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.88245 * 300.43262 * 23 9 7 40 40 H 1.08999 * 109.88712 * 61.44685 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1348 2.3912 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6963 2.6916 1.2495 8 8 3.5447 3.4792 0.3398 9 7 4.5389 2.9831 2.2600 10 6 4.8124 2.1234 3.4259 11 6 6.2168 2.5616 3.9183 12 6 6.1629 4.0940 3.6809 13 1 5.6609 4.5951 4.5086 14 7 7.5099 4.6358 3.4855 15 6 8.2230 5.1012 4.5579 16 1 7.7926 5.0684 5.5479 17 6 9.4996 5.6141 4.3727 18 7 10.0243 5.6536 3.1664 19 14 10.4720 6.2496 5.8356 20 1 11.2709 5.1414 6.4179 21 1 11.3821 7.3355 5.3910 22 1 9.5361 6.7768 6.8609 23 6 5.3331 4.2140 2.3853 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 3.4877 2.3304 -1.2495 28 1 3.6514 0.5578 -1.2493 29 1 2.3164 1.3285 -2.1392 30 1 0.5438 2.4030 0.7659 31 1 2.3166 1.3284 2.1392 32 1 3.6515 0.5577 1.2492 33 1 4.0665 2.2895 4.2031 34 1 4.8251 1.0745 3.1293 35 1 7.0046 2.1014 3.3221 36 1 6.3470 2.3345 4.9763 37 1 7.8967 4.6649 2.5964 38 1 10.9162 6.0124 3.0370 39 1 5.9977 4.3153 1.5273 40 1 4.6712 5.0779 2.4452 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491721298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:23 Heat of formation + Delta-G solvation = -69.133912 kcal Electronic energy + Delta-G solvation = -20714.516849 eV Core-core repulsion = 17529.389387 eV Total energy + Delta-G solvation = -3185.127462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30406 -39.53949 -38.16511 -35.90204 -33.97257 -33.35946 -32.15192 -31.00984 -29.84872 -28.35750 -25.64346 -24.27046 -23.33397 -21.58701 -20.56489 -20.20480 -19.35240 -18.19781 -17.69570 -17.27288 -16.64031 -16.51119 -15.82726 -15.63132 -15.52779 -15.21330 -14.76764 -14.29501 -13.85880 -13.68829 -13.36495 -13.20164 -13.16379 -13.05137 -12.96295 -12.70338 -12.55821 -12.44293 -12.31797 -12.13783 -11.97592 -11.74342 -11.68575 -11.15716 -10.93991 -10.57093 -10.30354 -9.60532 -9.05148 -7.95352 -5.25876 1.33718 1.49030 1.50792 1.59161 1.70155 2.01888 2.57071 3.31576 3.37633 3.54629 3.76611 3.78132 3.85535 3.98053 4.06571 4.23688 4.29919 4.41401 4.44342 4.53788 4.56769 4.71541 4.71742 4.86800 4.88083 4.94306 5.02707 5.15951 5.22507 5.27263 5.39589 5.46598 5.53402 5.69177 5.85007 6.25104 6.62446 6.88634 7.25645 7.31308 8.03423 8.27000 9.28281 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.050149 B = 0.003434 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.198446 B = 8151.880996 C = 8362.442546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.189 4.189 3 C 0.173 3.827 4 C -0.150 4.150 5 O -0.564 6.564 6 C -0.149 4.149 7 C 0.517 3.483 8 O -0.569 6.569 9 N -0.618 5.618 10 C 0.106 3.894 11 C -0.146 4.146 12 C 0.164 3.836 13 H 0.071 0.929 14 N -0.732 5.732 15 C -0.240 4.240 16 H 0.084 0.916 17 C -0.077 4.077 18 N -0.972 5.972 19 Si 0.976 3.024 20 H -0.285 1.285 21 H -0.300 1.300 22 H -0.266 1.266 23 C 0.110 3.890 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.135 0.865 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.381 0.619 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.039 0.961 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 -15.638 -0.506 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.207 4.207 3 C 0.132 3.868 4 C -0.207 4.207 5 O -0.371 6.371 6 C -0.188 4.188 7 C 0.308 3.692 8 O -0.448 6.448 9 N -0.352 5.352 10 C -0.016 4.016 11 C -0.187 4.187 12 C 0.055 3.945 13 H 0.089 0.911 14 N -0.371 5.371 15 C -0.371 4.371 16 H 0.102 0.898 17 C -0.269 4.269 18 N -0.623 5.623 19 Si 0.805 3.195 20 H -0.212 1.212 21 H -0.227 1.227 22 H -0.191 1.191 23 C -0.015 4.015 24 H 0.119 0.881 25 H 0.136 0.864 26 H 0.152 0.848 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.229 0.771 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.690 -15.032 -1.421 24.027 hybrid contribution 0.953 0.704 0.540 1.302 sum -17.737 -14.329 -0.880 22.818 Atomic orbital electron populations 1.24034 0.95910 1.03072 0.98267 1.23528 0.96879 0.97953 1.02339 1.19915 0.87946 0.84922 0.94002 1.21934 0.99261 1.03233 0.96292 1.86708 1.50730 1.50057 1.49608 1.22400 1.00446 0.94552 1.01428 1.20965 0.78726 0.89536 0.80011 1.90679 1.65627 1.52082 1.36401 1.48656 1.42875 1.20140 1.23561 1.22585 0.96462 0.95382 0.87140 1.23405 0.95995 0.97108 1.02170 1.21400 0.85065 0.93847 0.94211 0.91082 1.42561 1.13446 1.73762 1.07336 1.19662 0.96481 1.31716 0.89289 0.89777 1.25622 0.99075 1.03118 0.99112 1.69836 1.16859 1.53419 1.22148 0.85106 0.78401 0.77285 0.78745 1.21240 1.22711 1.19099 1.21959 0.93617 0.87497 0.98433 0.88118 0.86443 0.84766 0.92359 0.89934 0.92647 0.77063 0.85902 0.85659 0.88836 0.87877 0.92590 0.89230 0.79709 0.94065 0.94287 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 13.93 67.78 0.94 -1.15 16 2 C -0.19 -2.53 8.77 25.65 0.23 -2.31 16 3 C 0.17 3.40 0.94 -11.54 -0.01 3.39 16 4 C -0.15 -3.58 8.51 71.98 0.61 -2.97 16 5 O -0.56 -13.33 10.84 -131.51 -1.43 -14.76 16 6 C -0.15 -2.60 3.93 29.85 0.12 -2.49 16 7 C 0.52 14.90 7.41 87.66 0.65 15.55 16 8 O -0.57 -21.81 13.29 14.45 0.19 -21.62 16 9 N -0.62 -17.75 3.32 -811.34 -2.70 -20.45 16 10 C 0.11 2.23 6.70 86.94 0.58 2.82 16 11 C -0.15 -4.31 6.78 32.07 0.22 -4.09 16 12 C 0.16 6.18 3.61 46.18 0.17 6.34 16 13 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 14 N -0.73 -36.28 5.22 -317.32 -1.66 -37.94 16 15 C -0.24 -12.89 9.96 84.04 0.84 -12.05 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 17 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 18 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 19 Si 0.98 45.29 29.55 68.60 2.03 47.31 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 C 0.11 3.99 6.62 86.73 0.57 4.57 16 24 H 0.10 1.27 6.41 -2.91 -0.02 1.25 16 25 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16 26 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16 27 H 0.06 1.86 5.51 -2.39 -0.01 1.85 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.38 5.99 8.05 -74.06 -0.60 5.40 16 31 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.13 1.61 7.85 -2.39 -0.02 1.59 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.52 7.48 -2.39 -0.02 1.50 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.37 20.36 7.56 -92.71 -0.70 19.66 16 38 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.04 1.64 7.72 -2.39 -0.02 1.63 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -73.42 327.19 1.84 -71.57 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.26 Total: 31.49 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.38 Total: 3.72 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -4.07 Total: -117.72 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -1.23 Total: -36.38 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.42 1.84 -71.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491721298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.438 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds