Wall clock time and date at job start Mon Mar 30 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32990 * 120.00103 * 2 1 4 4 C 1.47103 * 119.99538 * 172.95823 * 3 2 1 5 5 O 1.21616 * 120.00462 * 354.02803 * 4 3 2 6 6 N 1.34778 * 119.99733 * 174.03937 * 4 3 2 7 7 C 1.46501 * 120.00174 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47257 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.46973 * 60.00468 * 8 7 6 10 10 O 1.42897 * 109.47386 * 300.00294 * 8 7 6 11 11 C 1.52999 * 109.47017 * 179.97438 * 8 7 6 12 12 N 1.46498 * 109.47119 * 184.99893 * 11 8 7 13 13 C 1.36939 * 120.00100 * 180.02562 * 12 11 8 14 14 H 1.08004 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.38812 * 119.99764 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99664 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00329 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46676 * 90.00344 * 17 15 13 19 19 H 1.48498 * 109.47083 * 210.00378 * 17 15 13 20 20 H 1.48495 * 109.47279 * 330.00543 * 17 15 13 21 21 C 1.50706 * 119.99602 * 179.97438 * 2 1 3 22 22 C 1.52997 * 117.49973 * 1.64628 * 21 2 1 23 23 C 1.52999 * 60.00206 * 252.51576 * 22 21 2 24 24 H 1.08999 * 109.46907 * 90.00064 * 1 2 3 25 25 H 1.08996 * 109.47477 * 209.99836 * 1 2 3 26 26 H 1.08999 * 109.46953 * 330.00334 * 1 2 3 27 27 H 1.07990 * 120.00497 * 352.95308 * 3 2 1 28 28 H 0.96998 * 120.00366 * 359.97438 * 6 4 3 29 29 H 1.08995 * 109.47339 * 299.99705 * 7 6 4 30 30 H 1.09006 * 109.47097 * 60.00049 * 7 6 4 31 31 H 0.96702 * 113.99944 * 299.99937 * 10 8 7 32 32 H 1.09000 * 109.47493 * 305.00666 * 11 8 7 33 33 H 1.09003 * 109.47178 * 65.00790 * 11 8 7 34 34 H 0.97003 * 119.99954 * 0.02562 * 12 11 8 35 35 H 0.96997 * 119.99858 * 179.97438 * 16 15 13 36 36 H 1.09002 * 115.55076 * 147.36032 * 21 2 1 37 37 H 1.08994 * 117.49976 * 0.02562 * 22 21 2 38 38 H 1.09001 * 117.49847 * 145.02602 * 22 21 2 39 39 H 1.09004 * 117.49531 * 252.51348 * 23 22 21 40 40 H 1.08998 * 117.52444 * 107.48215 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6347 1.1564 0.1562 5 8 4.2243 0.1195 0.3937 6 7 4.3215 2.3098 0.0363 7 6 5.7781 2.3147 0.1924 8 6 6.3060 3.7390 0.0091 9 1 5.8582 4.3916 0.7585 10 8 5.9653 4.2090 -1.2966 11 6 7.8272 3.7441 0.1728 12 7 8.3198 5.1226 0.1162 13 6 9.6598 5.3766 0.2400 14 1 10.3535 4.5605 0.3789 15 6 10.1264 6.6828 0.1869 16 7 11.4144 6.9268 0.3054 17 14 8.9267 8.0942 -0.0540 18 1 8.4594 8.5780 1.2700 19 1 9.6038 9.2018 -0.7750 20 1 7.7632 7.6248 -0.8484 21 6 2.2605 -1.3052 0.0006 22 6 1.4388 -2.5952 -0.0378 23 6 2.1538 -2.1818 1.2501 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6382 2.0835 -0.1147 28 1 3.8514 3.1368 -0.1534 29 1 6.0381 1.9558 1.1882 30 1 6.2261 1.6623 -0.5573 31 1 6.3310 3.6747 -2.0148 32 1 8.0908 3.3032 1.1341 33 1 8.2810 3.1630 -0.6301 34 1 7.6968 5.8556 -0.0089 35 1 11.7405 7.8396 0.2680 36 1 3.2127 -1.2986 -0.5298 37 1 0.3533 -2.5000 -0.0640 38 1 1.8503 -3.4377 -0.5937 39 1 3.0358 -2.7523 1.5414 40 1 1.5392 -1.8143 2.0718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568548645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:04 Heat of formation + Delta-G solvation = -34.547497 kcal Electronic energy + Delta-G solvation = -19840.805662 eV Core-core repulsion = 16657.177980 eV Total energy + Delta-G solvation = -3183.627683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04496 -38.27571 -37.43724 -34.45141 -34.08206 -33.65221 -31.49524 -29.76152 -28.23776 -25.66569 -23.54438 -22.55477 -22.20043 -21.51608 -20.75446 -18.91126 -17.75993 -17.30527 -16.51195 -16.05237 -15.89665 -15.21161 -14.73002 -14.55849 -14.31160 -13.86321 -13.71529 -13.38498 -13.27941 -13.10806 -12.66841 -12.58351 -12.39523 -12.01332 -11.80479 -11.56416 -11.31014 -11.01890 -10.87346 -10.80034 -10.61770 -10.17143 -9.86972 -9.63563 -9.52888 -9.24455 -8.95943 -8.90941 -7.26501 -5.78217 -3.14512 1.10616 3.15330 3.18634 3.39067 3.44843 3.46418 3.74939 4.28205 4.47881 4.56982 4.59727 4.71527 4.75746 4.82886 4.87863 5.07526 5.14653 5.16283 5.24654 5.36288 5.47581 5.50330 5.51063 5.65206 5.72061 5.78488 5.87501 5.88925 5.99363 6.09469 6.30962 6.40281 6.43141 6.55149 7.50904 7.77828 7.97538 8.22718 8.40320 9.19616 9.91614 10.11251 11.39848 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.046957 B = 0.002951 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.142773 B = 9486.776392 C = 9899.086339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.005 4.005 3 C -0.226 4.226 4 C 0.543 3.457 5 O -0.540 6.540 6 N -0.720 5.720 7 C 0.091 3.909 8 C 0.085 3.915 9 H 0.104 0.896 10 O -0.557 6.557 11 C 0.131 3.869 12 N -0.750 5.750 13 C -0.248 4.248 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.273 1.273 21 C -0.118 4.118 22 C -0.191 4.191 23 C -0.155 4.155 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.404 0.596 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.376 0.624 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.365 0.635 35 H 0.260 0.740 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.419 -15.285 -1.308 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.007 4.007 3 C -0.246 4.246 4 C 0.332 3.668 5 O -0.420 6.420 6 N -0.371 5.371 7 C -0.033 4.033 8 C 0.025 3.975 9 H 0.122 0.878 10 O -0.362 6.362 11 C 0.003 3.997 12 N -0.396 5.396 13 C -0.378 4.378 14 H 0.107 0.893 15 C -0.191 4.191 16 N -0.581 5.581 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.199 1.199 21 C -0.136 4.136 22 C -0.227 4.227 23 C -0.192 4.192 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.146 0.854 28 H 0.239 0.761 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.223 0.777 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.199 0.801 35 H 0.070 0.930 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.031 -15.583 -0.761 28.651 hybrid contribution -0.532 1.191 -0.513 1.402 sum -24.563 -14.393 -1.274 28.498 Atomic orbital electron populations 1.21018 0.91170 1.03300 1.03042 1.21806 0.95173 0.93394 0.90329 1.22359 0.93477 0.98695 1.10114 1.18545 0.87820 0.83387 0.77050 1.90751 1.71114 1.31392 1.48760 1.45832 1.07975 1.10619 1.72691 1.22031 0.80086 0.98197 1.03014 1.22451 0.96278 0.92946 0.85832 0.87828 1.86545 1.77091 1.57532 1.15029 1.21179 0.90140 0.88740 0.99649 1.42582 1.05812 1.01707 1.89499 1.19048 0.82387 0.93904 1.42429 0.89254 1.24679 0.95665 0.97015 1.01710 1.69709 1.11827 1.19674 1.56894 0.86531 0.81039 0.82981 0.78006 1.21097 1.21727 1.19851 1.21478 1.00594 0.87843 1.03693 1.23137 0.99007 0.98657 1.01946 1.22799 1.02670 1.02499 0.91266 0.90253 0.90784 0.90916 0.85446 0.76120 0.90356 0.91016 0.77698 0.94448 0.95059 0.80116 0.93009 0.84872 0.88688 0.88646 0.88463 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 9.49 36.01 0.34 -0.41 16 2 C -0.01 -0.05 5.80 -101.16 -0.59 -0.63 16 3 C -0.23 -2.17 9.62 -37.81 -0.36 -2.53 16 4 C 0.54 6.74 7.67 -12.66 -0.10 6.64 16 5 O -0.54 -8.28 13.31 5.26 0.07 -8.21 16 6 N -0.72 -8.18 5.44 -61.49 -0.33 -8.51 16 7 C 0.09 1.15 5.34 -4.04 -0.02 1.13 16 8 C 0.08 1.21 3.08 -26.73 -0.08 1.13 16 9 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 10 O -0.56 -8.08 13.03 -35.23 -0.46 -8.54 16 11 C 0.13 2.42 5.90 -4.04 -0.02 2.40 16 12 N -0.75 -17.85 5.35 -59.91 -0.32 -18.17 16 13 C -0.25 -7.09 10.47 -15.06 -0.16 -7.24 16 14 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 15 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 16 N -0.93 -29.56 13.97 55.49 0.78 -28.79 16 17 Si 0.88 22.37 27.74 -169.99 -4.71 17.65 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.27 -6.58 6.52 56.52 0.37 -6.22 16 21 C -0.12 -1.19 4.35 -91.77 -0.40 -1.59 16 22 C -0.19 -1.47 9.79 -26.73 -0.26 -1.73 16 23 C -0.16 -1.42 10.23 -26.73 -0.27 -1.69 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.38 6.37 -51.93 -0.33 0.05 16 26 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.40 3.95 8.33 -40.82 -0.34 3.61 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.38 4.49 9.05 45.56 0.41 4.90 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.37 8.65 5.53 -40.82 -0.23 8.42 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.13 1.67 6.24 -51.93 -0.32 1.35 16 37 H 0.09 0.59 6.31 -51.93 -0.33 0.26 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -34.14 334.43 -7.34 -41.48 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.37 Total: 12.52 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.02 Total: -4.48 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.12 Total: -55.47 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.39 Total: -16.74 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.14 -7.34 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.932 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds