Wall clock time and date at job start Mon Mar 30 2020 01:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32990 * 120.00103 * 2 1 4 4 C 1.47103 * 119.99538 * 172.95823 * 3 2 1 5 5 O 1.21616 * 120.00462 * 354.02803 * 4 3 2 6 6 N 1.34778 * 119.99733 * 174.03937 * 4 3 2 7 7 C 1.46501 * 120.00174 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47257 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.46973 * 60.00468 * 8 7 6 10 10 O 1.42897 * 109.47386 * 300.00294 * 8 7 6 11 11 C 1.52999 * 109.47017 * 179.97438 * 8 7 6 12 12 N 1.46498 * 109.47119 * 184.99893 * 11 8 7 13 13 C 1.36939 * 120.00100 * 180.02562 * 12 11 8 14 14 H 1.08004 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.38812 * 119.99764 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99664 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00329 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46676 * 90.00344 * 17 15 13 19 19 H 1.48498 * 109.47083 * 210.00378 * 17 15 13 20 20 H 1.48495 * 109.47279 * 330.00543 * 17 15 13 21 21 C 1.50706 * 119.99602 * 179.97438 * 2 1 3 22 22 C 1.52997 * 117.49973 * 1.64628 * 21 2 1 23 23 C 1.52999 * 60.00206 * 252.51576 * 22 21 2 24 24 H 1.08999 * 109.46907 * 90.00064 * 1 2 3 25 25 H 1.08996 * 109.47477 * 209.99836 * 1 2 3 26 26 H 1.08999 * 109.46953 * 330.00334 * 1 2 3 27 27 H 1.07990 * 120.00497 * 352.95308 * 3 2 1 28 28 H 0.96998 * 120.00366 * 359.97438 * 6 4 3 29 29 H 1.08995 * 109.47339 * 299.99705 * 7 6 4 30 30 H 1.09006 * 109.47097 * 60.00049 * 7 6 4 31 31 H 0.96702 * 113.99944 * 299.99937 * 10 8 7 32 32 H 1.09000 * 109.47493 * 305.00666 * 11 8 7 33 33 H 1.09003 * 109.47178 * 65.00790 * 11 8 7 34 34 H 0.97003 * 119.99954 * 0.02562 * 12 11 8 35 35 H 0.96997 * 119.99858 * 179.97438 * 16 15 13 36 36 H 1.09002 * 115.55076 * 147.36032 * 21 2 1 37 37 H 1.08994 * 117.49976 * 0.02562 * 22 21 2 38 38 H 1.09001 * 117.49847 * 145.02602 * 22 21 2 39 39 H 1.09004 * 117.49531 * 252.51348 * 23 22 21 40 40 H 1.08998 * 117.52444 * 107.48215 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6347 1.1564 0.1562 5 8 4.2243 0.1195 0.3937 6 7 4.3215 2.3098 0.0363 7 6 5.7781 2.3147 0.1924 8 6 6.3060 3.7390 0.0091 9 1 5.8582 4.3916 0.7585 10 8 5.9653 4.2090 -1.2966 11 6 7.8272 3.7441 0.1728 12 7 8.3198 5.1226 0.1162 13 6 9.6598 5.3766 0.2400 14 1 10.3535 4.5605 0.3789 15 6 10.1264 6.6828 0.1869 16 7 11.4144 6.9268 0.3054 17 14 8.9267 8.0942 -0.0540 18 1 8.4594 8.5780 1.2700 19 1 9.6038 9.2018 -0.7750 20 1 7.7632 7.6248 -0.8484 21 6 2.2605 -1.3052 0.0006 22 6 1.4388 -2.5952 -0.0378 23 6 2.1538 -2.1818 1.2501 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6382 2.0835 -0.1147 28 1 3.8514 3.1368 -0.1534 29 1 6.0381 1.9558 1.1882 30 1 6.2261 1.6623 -0.5573 31 1 6.3310 3.6747 -2.0148 32 1 8.0908 3.3032 1.1341 33 1 8.2810 3.1630 -0.6301 34 1 7.6968 5.8556 -0.0089 35 1 11.7405 7.8396 0.2680 36 1 3.2127 -1.2986 -0.5298 37 1 0.3533 -2.5000 -0.0640 38 1 1.8503 -3.4377 -0.5937 39 1 3.0358 -2.7523 1.5414 40 1 1.5392 -1.8143 2.0718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568548645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:03 Heat of formation + Delta-G solvation = -61.224847 kcal Electronic energy + Delta-G solvation = -19841.962479 eV Core-core repulsion = 16657.177980 eV Total energy + Delta-G solvation = -3184.784499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96661 -39.28697 -38.41008 -36.20977 -35.21077 -34.31782 -33.50232 -31.08046 -29.04220 -27.08570 -24.61823 -23.70989 -23.18638 -22.87237 -21.72126 -19.92041 -19.59902 -18.14110 -17.66527 -17.20893 -16.82156 -16.53926 -16.08574 -15.68421 -15.45750 -15.34164 -14.91236 -14.37856 -14.28066 -14.02553 -13.90889 -13.87616 -13.36286 -13.21772 -13.12303 -12.81649 -12.49281 -12.24916 -12.18817 -11.89904 -11.83966 -11.69375 -11.32932 -11.10034 -11.00063 -10.53473 -10.14337 -9.71503 -9.33987 -8.05168 -5.39400 0.37459 1.39157 1.41787 1.50266 2.22277 2.30341 2.47617 3.06301 3.24698 3.37086 3.51345 3.62959 3.84715 3.96671 4.04202 4.07144 4.14338 4.22752 4.27419 4.44045 4.58867 4.65984 4.72279 4.75679 4.82242 4.90148 4.96864 5.10156 5.15911 5.22755 5.26110 5.43312 5.49030 5.65313 5.71705 6.18270 6.63078 6.74045 7.05480 7.32108 7.80415 8.00077 9.16125 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.046957 B = 0.002951 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.142773 B = 9486.776392 C = 9899.086339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.002 3.998 3 C -0.241 4.241 4 C 0.535 3.465 5 O -0.578 6.578 6 N -0.712 5.712 7 C 0.103 3.897 8 C 0.107 3.893 9 H 0.109 0.891 10 O -0.563 6.563 11 C 0.124 3.876 12 N -0.753 5.753 13 C -0.239 4.239 14 H 0.056 0.944 15 C -0.064 4.064 16 N -0.983 5.983 17 Si 0.959 3.041 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.251 1.251 21 C -0.141 4.141 22 C -0.168 4.168 23 C -0.164 4.164 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.414 0.586 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.387 0.613 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.369 0.631 35 H 0.259 0.741 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.110 -15.089 -1.733 31.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.000 4.000 3 C -0.261 4.261 4 C 0.326 3.674 5 O -0.460 6.460 6 N -0.364 5.364 7 C -0.023 4.023 8 C 0.047 3.953 9 H 0.127 0.873 10 O -0.369 6.369 11 C -0.003 4.003 12 N -0.399 5.399 13 C -0.370 4.370 14 H 0.074 0.926 15 C -0.256 4.256 16 N -0.634 5.634 17 Si 0.785 3.215 18 H -0.203 1.203 19 H -0.222 1.222 20 H -0.176 1.176 21 C -0.159 4.159 22 C -0.205 4.205 23 C -0.201 4.201 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.173 0.827 28 H 0.251 0.749 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.236 0.764 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.203 0.797 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.772 -15.412 -1.200 31.785 hybrid contribution 0.670 0.959 -0.385 1.231 sum -27.102 -14.453 -1.585 30.756 Atomic orbital electron populations 1.21094 0.88439 1.04470 1.04246 1.22135 0.96948 0.92434 0.88482 1.22452 0.91698 1.00261 1.11738 1.19106 0.89130 0.82843 0.76283 1.90745 1.72092 1.32647 1.50546 1.45725 1.07246 1.11018 1.72364 1.21768 0.81083 0.96811 1.02601 1.22132 0.93036 0.93980 0.86177 0.87286 1.86521 1.77039 1.58113 1.15273 1.21399 0.93278 0.86019 0.99594 1.42557 1.03973 1.03993 1.89368 1.19041 0.84134 0.93055 1.40790 0.92596 1.25551 0.97551 1.00102 1.02377 1.69892 1.14242 1.20214 1.59017 0.85351 0.78991 0.78800 0.78311 1.20267 1.22205 1.17561 1.21406 1.00394 0.89778 1.04338 1.23228 0.99975 0.97141 1.00129 1.22834 1.02871 1.02556 0.91861 0.88803 0.89827 0.89566 0.82730 0.74921 0.90991 0.91308 0.76355 0.94446 0.94842 0.79720 0.93234 0.88023 0.86382 0.88287 0.89627 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 9.49 71.24 0.68 -0.36 16 2 C 0.00 0.03 5.80 -17.61 -0.10 -0.07 16 3 C -0.24 -4.18 9.62 23.43 0.23 -3.95 16 4 C 0.54 12.90 7.67 86.57 0.66 13.56 16 5 O -0.58 -18.00 13.31 -4.08 -0.05 -18.06 16 6 N -0.71 -15.13 5.44 -466.70 -2.54 -17.67 16 7 C 0.10 2.47 5.34 86.38 0.46 2.93 16 8 C 0.11 2.86 3.08 30.59 0.09 2.95 16 9 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 10 O -0.56 -14.93 13.03 -148.98 -1.94 -16.87 16 11 C 0.12 4.48 5.90 86.38 0.51 4.99 16 12 N -0.75 -35.08 5.35 -343.45 -1.84 -36.91 16 13 C -0.24 -13.82 10.47 84.03 0.88 -12.94 16 14 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 15 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 16 N -0.98 -63.67 13.97 21.65 0.30 -63.36 16 17 Si 0.96 45.96 27.74 68.60 1.90 47.86 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 21 C -0.14 -2.76 4.35 -11.54 -0.05 -2.81 16 22 C -0.17 -2.29 9.79 30.59 0.30 -1.99 16 23 C -0.16 -2.89 10.23 30.59 0.31 -2.58 16 24 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.08 0.55 6.37 -2.39 -0.02 0.53 16 26 H 0.09 0.52 8.07 -2.39 -0.02 0.50 16 27 H 0.16 1.74 8.06 -2.92 -0.02 1.71 16 28 H 0.41 7.12 8.33 -92.71 -0.77 6.35 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.39 8.40 9.05 -74.06 -0.67 7.73 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.37 16.61 5.53 -92.71 -0.51 16.10 16 35 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 36 H 0.10 2.66 6.24 -2.39 -0.01 2.65 16 37 H 0.12 1.07 6.31 -2.39 -0.02 1.05 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -74.89 334.43 -0.68 -75.57 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.95 Total: 33.07 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.44 Total: -3.63 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -4.08 Total: -117.95 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -2.00 Total: -34.92 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Total: -74.89 -0.68 -75.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.346 kcal (2) G-P(sol) polarization free energy of solvation -74.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds