Wall clock time and date at job start Mon Mar 30 2020 01:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32992 * 120.00203 * 2 1 4 4 C 1.47099 * 119.99932 * 353.10568 * 3 2 1 5 5 O 1.21610 * 120.00278 * 353.76662 * 4 3 2 6 6 N 1.34781 * 119.99839 * 173.76881 * 4 3 2 7 7 C 1.46495 * 119.99738 * 179.97438 * 6 4 3 8 8 C 1.53009 * 109.47264 * 179.97438 * 7 6 4 9 9 H 1.08995 * 109.46966 * 305.00455 * 8 7 6 10 10 O 1.42902 * 109.46579 * 64.99869 * 8 7 6 11 11 C 1.52994 * 109.47148 * 184.99848 * 8 7 6 12 12 N 1.46509 * 109.47050 * 179.97438 * 11 8 7 13 13 C 1.36935 * 119.99943 * 180.02562 * 12 11 8 14 14 H 1.07991 * 120.00043 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99635 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00360 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99853 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47473 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47118 * 119.99877 * 17 15 13 20 20 H 1.48495 * 109.47137 * 239.99507 * 17 15 13 21 21 C 1.50708 * 119.99977 * 180.02562 * 2 1 3 22 22 C 1.52997 * 117.49594 * 8.74906 * 21 2 1 23 23 C 1.53003 * 117.49739 * 300.08877 * 21 2 1 24 24 H 1.09002 * 109.47265 * 84.53551 * 1 2 3 25 25 H 1.08994 * 109.47258 * 204.53363 * 1 2 3 26 26 H 1.09007 * 109.47064 * 324.53290 * 1 2 3 27 27 H 1.07998 * 120.00073 * 173.37862 * 3 2 1 28 28 H 0.96995 * 120.00465 * 0.02562 * 6 4 3 29 29 H 1.09001 * 109.47691 * 299.99632 * 7 6 4 30 30 H 1.08996 * 109.47646 * 60.00242 * 7 6 4 31 31 H 0.96699 * 114.00415 * 60.00529 * 10 8 7 32 32 H 1.09004 * 109.47666 * 299.99941 * 11 8 7 33 33 H 1.09002 * 109.47449 * 60.00555 * 11 8 7 34 34 H 0.97002 * 119.99675 * 0.02562 * 12 11 8 35 35 H 0.97005 * 120.00582 * 180.02562 * 16 15 13 36 36 H 1.08996 * 115.55022 * 154.41786 * 21 2 1 37 37 H 1.09002 * 117.50338 * 359.97438 * 22 21 2 38 38 H 1.09002 * 117.50046 * 145.02182 * 22 21 2 39 39 H 1.08994 * 117.49543 * 214.97982 * 23 21 2 40 40 H 1.09003 * 117.49610 * 359.97337 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4445 2.4210 -0.1529 5 8 0.2522 2.4136 -0.3925 6 7 2.0993 3.5924 -0.0276 7 6 1.3749 4.8565 -0.1804 8 6 2.3436 6.0256 0.0088 9 1 2.8483 5.9273 0.9699 10 8 3.3128 6.0158 -1.0413 11 6 1.5663 7.3429 -0.0268 12 7 2.4938 8.4623 0.1551 13 6 2.0227 9.7481 0.1592 14 1 0.9676 9.9370 0.0281 15 6 2.9016 10.8087 0.3310 16 7 4.1877 10.5785 0.4903 17 14 2.2591 12.5627 0.3360 18 1 0.7873 12.5514 0.1389 19 1 2.5799 13.2036 1.6366 20 1 2.8995 13.3276 -0.7640 21 6 2.2605 -1.3052 -0.0006 22 6 1.4520 -2.5875 -0.2076 23 6 2.0244 -2.2577 1.1733 24 1 -0.3634 0.0979 -1.0230 25 1 -0.3633 -0.9348 0.4267 26 1 -0.3633 0.8370 0.5963 27 1 3.2465 1.1548 0.1078 28 1 3.0503 3.5984 0.1631 29 1 0.9360 4.9056 -1.1769 30 1 0.5846 4.9153 0.5680 31 1 2.9339 6.0998 -1.9270 32 1 1.0616 7.4412 -0.9879 33 1 0.8271 7.3504 0.7743 34 1 3.4417 8.2926 0.2725 35 1 4.8019 11.3196 0.6107 36 1 3.2637 -1.2686 -0.4252 37 1 0.3751 -2.4872 -0.3429 38 1 1.9235 -3.3948 -0.7680 39 1 2.8723 -2.8480 1.5207 40 1 1.3245 -1.9401 1.9462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568548648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:07 Heat of formation + Delta-G solvation = -39.704073 kcal Electronic energy + Delta-G solvation = -19609.351804 eV Core-core repulsion = 16425.500515 eV Total energy + Delta-G solvation = -3183.851288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98325 -38.35093 -37.51840 -34.43105 -33.98196 -33.33476 -31.30883 -29.42326 -27.76870 -25.58872 -24.00911 -22.77552 -22.46356 -21.40756 -20.46754 -18.81259 -17.24278 -16.98280 -16.81791 -15.97547 -15.87893 -15.21154 -14.76549 -14.62976 -14.46349 -13.76951 -13.48490 -13.31068 -13.20397 -12.91349 -12.56433 -12.30590 -12.19927 -11.87714 -11.82292 -11.60417 -11.25867 -10.95721 -10.83920 -10.83577 -10.60312 -10.14029 -9.85611 -9.73188 -9.42710 -9.27901 -8.92649 -8.85991 -6.94018 -5.76437 -3.06127 1.14683 3.16909 3.20969 3.43246 3.48793 3.51159 3.54778 4.21923 4.44701 4.52104 4.54966 4.66933 4.73142 4.82957 4.91217 5.08122 5.20603 5.27453 5.37569 5.46353 5.55724 5.59650 5.62950 5.67332 5.71842 5.80623 5.89988 5.97148 6.20279 6.28271 6.32546 6.47944 6.51948 6.68317 7.55979 7.68822 7.95812 8.25934 8.41744 9.53467 10.10223 10.46196 11.45966 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.061837 B = 0.002572 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.695319 B =10881.793113 C =11120.267375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.003 4.003 3 C -0.226 4.226 4 C 0.543 3.457 5 O -0.546 6.546 6 N -0.718 5.718 7 C 0.091 3.909 8 C 0.089 3.911 9 H 0.104 0.896 10 O -0.552 6.552 11 C 0.127 3.873 12 N -0.726 5.726 13 C -0.243 4.243 14 H 0.071 0.929 15 C -0.013 4.013 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.134 4.134 22 C -0.172 4.172 23 C -0.167 4.167 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.405 0.595 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.373 0.627 32 H 0.023 0.977 33 H 0.028 0.972 34 H 0.389 0.611 35 H 0.255 0.745 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 -25.805 -0.719 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.005 4.005 3 C -0.246 4.246 4 C 0.333 3.667 5 O -0.427 6.427 6 N -0.369 5.369 7 C -0.034 4.034 8 C 0.029 3.971 9 H 0.122 0.878 10 O -0.357 6.357 11 C -0.002 4.002 12 N -0.371 5.371 13 C -0.374 4.374 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.152 4.152 22 C -0.209 4.209 23 C -0.204 4.204 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.144 0.856 28 H 0.239 0.761 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.221 0.779 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.224 0.776 35 H 0.065 0.935 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.276 -25.689 -0.391 26.046 hybrid contribution 0.222 1.110 -0.309 1.173 sum -4.054 -24.579 -0.700 24.921 Atomic orbital electron populations 1.21173 0.90804 1.02377 1.03757 1.21763 0.96136 0.92297 0.90292 1.22295 1.00375 0.91834 1.10144 1.18504 0.86903 0.84250 0.77087 1.90752 1.15126 1.87722 1.49057 1.45839 1.13186 1.05417 1.72461 1.22082 0.95594 0.83046 1.02655 1.22386 0.89733 0.92904 0.92062 0.87845 1.86572 1.35548 1.96132 1.17465 1.21199 0.93208 0.87157 0.98668 1.42247 1.06517 1.00770 1.87566 1.19266 0.92960 0.83173 1.41983 0.91152 1.24769 0.95426 0.98013 1.02755 1.69688 1.01440 1.30447 1.56232 0.86104 0.77816 0.84973 0.77203 1.20547 1.21826 1.21827 1.21296 1.00223 0.88779 1.04882 1.23085 1.00519 0.97662 0.99658 1.23003 1.03735 1.01944 0.91700 0.90203 0.92736 0.89003 0.85566 0.76050 0.91137 0.90533 0.77945 0.95940 0.95379 0.77647 0.93523 0.86569 0.87970 0.88264 0.88188 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 7.90 36.00 0.28 -0.97 16 2 C 0.00 -0.03 5.81 -101.17 -0.59 -0.62 16 3 C -0.23 -2.32 9.67 -37.81 -0.37 -2.69 16 4 C 0.54 7.08 7.61 -12.66 -0.10 6.99 16 5 O -0.55 -8.65 13.28 5.27 0.07 -8.58 16 6 N -0.72 -8.75 5.50 -61.49 -0.34 -9.09 16 7 C 0.09 1.22 5.31 -4.04 -0.02 1.20 16 8 C 0.09 1.38 3.09 -26.73 -0.08 1.30 16 9 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 10 O -0.55 -8.91 13.03 -35.23 -0.46 -9.37 16 11 C 0.13 2.47 5.92 -4.04 -0.02 2.45 16 12 N -0.73 -18.52 5.49 -59.91 -0.33 -18.85 16 13 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 17 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 C -0.13 -0.97 6.01 -91.77 -0.55 -1.53 16 22 C -0.17 -1.04 9.77 -26.69 -0.26 -1.30 16 23 C -0.17 -1.02 10.10 -26.69 -0.27 -1.29 16 24 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 25 H 0.05 0.43 6.31 -51.93 -0.33 0.10 16 26 H 0.09 1.12 6.12 -51.93 -0.32 0.80 16 27 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.40 4.32 8.45 -40.82 -0.35 3.97 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.37 5.08 9.05 45.56 0.41 5.49 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.39 10.62 7.54 -40.82 -0.31 10.31 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.61 6.42 -51.93 -0.33 0.28 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -33.23 337.33 -7.90 -41.13 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -5.41 Total: 13.86 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.22 Total: -3.96 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.06 Total: -55.72 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.39 Total: -17.95 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.23 -7.90 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.427 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds