Wall clock time and date at job start Mon Mar 30 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32992 * 120.00203 * 2 1 4 4 C 1.47099 * 119.99932 * 353.10568 * 3 2 1 5 5 O 1.21610 * 120.00278 * 353.76662 * 4 3 2 6 6 N 1.34781 * 119.99839 * 173.76881 * 4 3 2 7 7 C 1.46495 * 119.99738 * 179.97438 * 6 4 3 8 8 C 1.53009 * 109.47264 * 179.97438 * 7 6 4 9 9 H 1.08995 * 109.46966 * 305.00455 * 8 7 6 10 10 O 1.42902 * 109.46579 * 64.99869 * 8 7 6 11 11 C 1.52994 * 109.47148 * 184.99848 * 8 7 6 12 12 N 1.46509 * 109.47050 * 179.97438 * 11 8 7 13 13 C 1.36935 * 119.99943 * 180.02562 * 12 11 8 14 14 H 1.07991 * 120.00043 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99635 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00360 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99853 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47473 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47118 * 119.99877 * 17 15 13 20 20 H 1.48495 * 109.47137 * 239.99507 * 17 15 13 21 21 C 1.50708 * 119.99977 * 180.02562 * 2 1 3 22 22 C 1.52997 * 117.49594 * 8.74906 * 21 2 1 23 23 C 1.53003 * 117.49739 * 300.08877 * 21 2 1 24 24 H 1.09002 * 109.47265 * 84.53551 * 1 2 3 25 25 H 1.08994 * 109.47258 * 204.53363 * 1 2 3 26 26 H 1.09007 * 109.47064 * 324.53290 * 1 2 3 27 27 H 1.07998 * 120.00073 * 173.37862 * 3 2 1 28 28 H 0.96995 * 120.00465 * 0.02562 * 6 4 3 29 29 H 1.09001 * 109.47691 * 299.99632 * 7 6 4 30 30 H 1.08996 * 109.47646 * 60.00242 * 7 6 4 31 31 H 0.96699 * 114.00415 * 60.00529 * 10 8 7 32 32 H 1.09004 * 109.47666 * 299.99941 * 11 8 7 33 33 H 1.09002 * 109.47449 * 60.00555 * 11 8 7 34 34 H 0.97002 * 119.99675 * 0.02562 * 12 11 8 35 35 H 0.97005 * 120.00582 * 180.02562 * 16 15 13 36 36 H 1.08996 * 115.55022 * 154.41786 * 21 2 1 37 37 H 1.09002 * 117.50338 * 359.97438 * 22 21 2 38 38 H 1.09002 * 117.50046 * 145.02182 * 22 21 2 39 39 H 1.08994 * 117.49543 * 214.97982 * 23 21 2 40 40 H 1.09003 * 117.49610 * 359.97337 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4445 2.4210 -0.1529 5 8 0.2522 2.4136 -0.3925 6 7 2.0993 3.5924 -0.0276 7 6 1.3749 4.8565 -0.1804 8 6 2.3436 6.0256 0.0088 9 1 2.8483 5.9273 0.9699 10 8 3.3128 6.0158 -1.0413 11 6 1.5663 7.3429 -0.0268 12 7 2.4938 8.4623 0.1551 13 6 2.0227 9.7481 0.1592 14 1 0.9676 9.9370 0.0281 15 6 2.9016 10.8087 0.3310 16 7 4.1877 10.5785 0.4903 17 14 2.2591 12.5627 0.3360 18 1 0.7873 12.5514 0.1389 19 1 2.5799 13.2036 1.6366 20 1 2.8995 13.3276 -0.7640 21 6 2.2605 -1.3052 -0.0006 22 6 1.4520 -2.5875 -0.2076 23 6 2.0244 -2.2577 1.1733 24 1 -0.3634 0.0979 -1.0230 25 1 -0.3633 -0.9348 0.4267 26 1 -0.3633 0.8370 0.5963 27 1 3.2465 1.1548 0.1078 28 1 3.0503 3.5984 0.1631 29 1 0.9360 4.9056 -1.1769 30 1 0.5846 4.9153 0.5680 31 1 2.9339 6.0998 -1.9270 32 1 1.0616 7.4412 -0.9879 33 1 0.8271 7.3504 0.7743 34 1 3.4417 8.2926 0.2725 35 1 4.8019 11.3196 0.6107 36 1 3.2637 -1.2686 -0.4252 37 1 0.3751 -2.4872 -0.3429 38 1 1.9235 -3.3948 -0.7680 39 1 2.8723 -2.8480 1.5207 40 1 1.3245 -1.9401 1.9462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568548648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:06 Heat of formation + Delta-G solvation = -64.821858 kcal Electronic energy + Delta-G solvation = -19610.440993 eV Core-core repulsion = 16425.500515 eV Total energy + Delta-G solvation = -3184.940477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97784 -39.23150 -38.59502 -36.08981 -35.32041 -34.10365 -33.20216 -30.83966 -28.78234 -27.06358 -25.18321 -23.97029 -23.20621 -22.77014 -21.45648 -19.63053 -19.20520 -17.99078 -17.84666 -17.18906 -16.85904 -16.43187 -16.15918 -15.85594 -15.57907 -15.24376 -14.89914 -14.46008 -14.29784 -14.07387 -13.85703 -13.68927 -13.20705 -12.96333 -12.86347 -12.79046 -12.46652 -12.22135 -12.12982 -11.96392 -11.83985 -11.81906 -11.33320 -11.08132 -10.98801 -10.58515 -10.20857 -9.73344 -9.02465 -7.95961 -5.25708 0.33775 1.47255 1.48143 1.58355 2.19898 2.25728 2.55772 3.01516 3.35147 3.44944 3.58669 3.61542 3.88033 3.96425 4.02671 4.12674 4.14871 4.20009 4.30795 4.41924 4.61220 4.67186 4.73145 4.76061 4.82936 4.91875 5.00026 5.09534 5.15212 5.20157 5.26020 5.42742 5.47749 5.53785 5.56090 6.25298 6.59515 6.78367 7.27012 7.32378 8.07416 8.30976 9.27463 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.061837 B = 0.002572 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.695319 B =10881.793113 C =11120.267375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.004 3.996 3 C -0.239 4.239 4 C 0.538 3.462 5 O -0.580 6.580 6 N -0.712 5.712 7 C 0.104 3.896 8 C 0.108 3.892 9 H 0.101 0.899 10 O -0.563 6.563 11 C 0.122 3.878 12 N -0.740 5.740 13 C -0.248 4.248 14 H 0.076 0.924 15 C -0.077 4.077 16 N -0.968 5.968 17 Si 0.976 3.024 18 H -0.266 1.266 19 H -0.292 1.292 20 H -0.293 1.293 21 C -0.147 4.147 22 C -0.169 4.169 23 C -0.161 4.161 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.149 0.851 28 H 0.413 0.587 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.384 0.616 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -27.230 -0.793 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.002 3.998 3 C -0.260 4.260 4 C 0.329 3.671 5 O -0.463 6.463 6 N -0.363 5.363 7 C -0.021 4.021 8 C 0.049 3.951 9 H 0.119 0.881 10 O -0.369 6.369 11 C -0.006 4.006 12 N -0.383 5.383 13 C -0.379 4.379 14 H 0.094 0.906 15 C -0.269 4.269 16 N -0.619 5.619 17 Si 0.805 3.195 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.165 4.165 22 C -0.205 4.205 23 C -0.198 4.198 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.167 0.833 28 H 0.250 0.750 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.542 -27.142 -0.474 27.523 hybrid contribution 0.229 1.445 -0.299 1.494 sum -4.313 -25.696 -0.773 26.067 Atomic orbital electron populations 1.21100 0.91552 1.02443 1.02837 1.21999 0.95881 0.93372 0.88532 1.22336 1.01351 0.90598 1.11701 1.18985 0.86637 0.85119 0.76340 1.90741 1.16626 1.88207 1.50747 1.45750 1.13550 1.04816 1.72194 1.21810 0.94843 0.82859 1.02592 1.22092 0.89408 0.91650 0.91993 0.88131 1.86551 1.36061 1.96051 1.18272 1.21403 0.92872 0.87395 0.98884 1.42427 1.06750 1.01522 1.87624 1.19680 0.93255 0.84557 1.40445 0.90560 1.25619 0.95725 1.02135 1.03443 1.69843 1.02647 1.31326 1.58039 0.85041 0.77897 0.79878 0.76720 1.19005 1.21951 1.21982 1.21350 1.00726 0.87930 1.06450 1.23187 1.00446 0.97117 0.99773 1.23090 1.04122 1.01131 0.91443 0.91158 0.90693 0.91346 0.83307 0.75023 0.91106 0.90794 0.76670 0.95161 0.94881 0.79056 0.93962 0.85444 0.88135 0.86781 0.86666 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 7.90 71.23 0.56 -1.86 16 2 C 0.00 0.07 5.81 -17.62 -0.10 -0.03 16 3 C -0.24 -4.64 9.67 23.43 0.23 -4.41 16 4 C 0.54 13.75 7.61 86.57 0.66 14.41 16 5 O -0.58 -18.49 13.28 -4.06 -0.05 -18.54 16 6 N -0.71 -16.69 5.50 -466.71 -2.57 -19.26 16 7 C 0.10 2.71 5.31 86.38 0.46 3.17 16 8 C 0.11 3.29 3.09 30.60 0.09 3.38 16 9 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 10 O -0.56 -17.66 13.03 -148.98 -1.94 -19.60 16 11 C 0.12 4.68 5.92 86.38 0.51 5.19 16 12 N -0.74 -37.73 5.49 -343.45 -1.89 -39.62 16 13 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 14 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 15 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 16 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 17 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 C -0.15 -1.81 6.01 -11.54 -0.07 -1.88 16 22 C -0.17 -1.62 9.77 30.62 0.30 -1.32 16 23 C -0.16 -1.56 10.10 30.62 0.31 -1.25 16 24 H 0.07 1.51 8.05 -2.39 -0.02 1.49 16 25 H 0.07 1.11 6.31 -2.39 -0.02 1.09 16 26 H 0.07 1.70 6.12 -2.38 -0.01 1.68 16 27 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.41 8.29 8.45 -92.71 -0.78 7.50 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.38 10.07 9.05 -74.06 -0.67 9.40 16 32 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.38 20.80 7.54 -92.71 -0.70 20.10 16 35 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 36 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.00 6.42 -2.39 -0.02 0.99 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -70.71 337.33 -0.97 -71.68 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: -1.09 Total: 38.32 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 4.26 Total: -1.69 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -4.17 Total: -118.63 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -2.00 Total: -38.14 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -70.71 -0.97 -71.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.856 kcal (2) G-P(sol) polarization free energy of solvation -70.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds