Wall clock time and date at job start Mon Mar 30 2020 01:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33000 * 119.99804 * 2 1 4 4 C 1.47101 * 119.99762 * 4.29548 * 3 2 1 5 5 O 1.21615 * 120.00387 * 354.11316 * 4 3 2 6 6 N 1.34780 * 119.99992 * 174.11073 * 4 3 2 7 7 C 1.46493 * 120.00123 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46996 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47355 * 60.00249 * 8 7 6 10 10 O 1.42898 * 109.46957 * 300.00076 * 8 7 6 11 11 C 1.53004 * 109.47171 * 180.02562 * 8 7 6 12 12 N 1.46502 * 109.47082 * 185.00292 * 11 8 7 13 13 C 1.36935 * 119.99746 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00406 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99994 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99517 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99960 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47260 * 59.99675 * 17 15 13 19 19 H 1.48501 * 109.46654 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47062 * 299.99345 * 17 15 13 21 21 C 1.50695 * 120.00054 * 180.02562 * 2 1 3 22 22 C 1.52994 * 117.49989 * 4.38056 * 21 2 1 23 23 C 1.53002 * 117.49747 * 295.71728 * 21 2 1 24 24 H 1.08995 * 109.47508 * 64.20749 * 1 2 3 25 25 H 1.09005 * 109.47012 * 184.20776 * 1 2 3 26 26 H 1.09000 * 109.47325 * 304.20839 * 1 2 3 27 27 H 1.08001 * 119.99758 * 184.29077 * 3 2 1 28 28 H 0.97004 * 119.99535 * 0.02562 * 6 4 3 29 29 H 1.09002 * 109.47339 * 60.00469 * 7 6 4 30 30 H 1.09002 * 109.47310 * 299.99930 * 7 6 4 31 31 H 0.96702 * 114.00258 * 299.99603 * 10 8 7 32 32 H 1.09006 * 109.46571 * 304.99504 * 11 8 7 33 33 H 1.08994 * 109.47317 * 64.99519 * 11 8 7 34 34 H 0.96994 * 119.99881 * 359.97438 * 12 11 8 35 35 H 0.97002 * 119.99569 * 180.02562 * 16 15 13 36 36 H 1.09003 * 115.55002 * 150.05556 * 21 2 1 37 37 H 1.08996 * 117.49974 * 359.97438 * 22 21 2 38 38 H 1.09002 * 117.49883 * 145.02631 * 22 21 2 39 39 H 1.08996 * 117.50084 * 214.97809 * 23 21 2 40 40 H 1.08999 * 117.49832 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4394 2.4239 0.0954 5 8 0.2237 2.4293 0.0664 6 7 2.1157 3.5836 0.2151 7 6 1.3863 4.8505 0.3095 8 6 2.3828 6.0046 0.4360 9 1 3.0307 6.0229 -0.4404 10 8 3.1757 5.8227 1.6108 11 6 1.6210 7.3278 0.5353 12 7 2.5736 8.4408 0.5360 13 6 2.1198 9.7302 0.6173 14 1 1.0597 9.9267 0.6804 15 6 3.0223 10.7849 0.6186 16 7 4.3143 10.5454 0.5422 17 14 2.4033 12.5438 0.7301 18 1 1.6420 12.7215 1.9927 19 1 3.5583 13.4770 0.7122 20 1 1.5176 12.8311 -0.4266 21 6 2.2605 -1.3050 -0.0006 22 6 1.4419 -2.5934 -0.1048 23 6 2.1037 -2.2118 1.2218 24 1 -0.3634 0.4471 -0.9252 25 1 -0.3633 -1.0249 0.0754 26 1 -0.3634 0.5777 0.8499 27 1 3.2497 1.1531 -0.0700 28 1 3.0854 3.5794 0.2379 29 1 0.7381 4.8322 1.1857 30 1 0.7818 4.9895 -0.5868 31 1 2.6637 5.7967 2.4308 32 1 0.9493 7.4251 -0.3177 33 1 1.0413 7.3449 1.4581 34 1 3.5256 8.2644 0.4790 35 1 4.9450 11.2824 0.5434 36 1 3.2335 -1.2859 -0.4915 37 1 0.3583 -2.4971 -0.1725 38 1 1.8765 -3.4220 -0.6639 39 1 2.9733 -2.7896 1.5347 40 1 1.4559 -1.8642 2.0265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568548649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:10 Heat of formation + Delta-G solvation = -39.185885 kcal Electronic energy + Delta-G solvation = -19621.514923 eV Core-core repulsion = 16437.686105 eV Total energy + Delta-G solvation = -3183.828818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.96751 -38.35750 -37.51713 -34.41361 -33.99205 -33.32848 -31.31889 -29.42196 -27.78300 -25.58618 -24.00970 -22.77555 -22.44877 -21.41055 -20.46360 -18.80499 -17.24534 -16.98646 -16.82168 -15.97754 -15.89590 -15.13614 -14.86068 -14.62547 -14.45711 -13.73989 -13.45647 -13.33071 -13.17589 -12.92065 -12.54565 -12.36593 -12.26819 -11.86999 -11.82108 -11.53613 -11.16436 -10.96428 -10.82463 -10.80263 -10.60494 -10.20993 -9.85023 -9.72961 -9.43683 -9.31412 -8.91585 -8.85427 -6.94215 -5.76154 -3.05887 1.16454 3.17634 3.20986 3.44361 3.48432 3.49763 3.54093 4.22890 4.45683 4.51475 4.55704 4.67562 4.72851 4.80844 4.90170 5.07540 5.18430 5.26710 5.38516 5.49135 5.55826 5.64177 5.64695 5.68470 5.72485 5.81530 5.91172 5.97035 6.20091 6.27835 6.31500 6.48065 6.52298 6.68055 7.57002 7.67932 7.94218 8.26703 8.42029 9.53479 10.10067 10.45847 11.46180 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.063134 B = 0.002585 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.393576 B =10830.963130 C =11102.549461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.005 4.005 3 C -0.224 4.224 4 C 0.542 3.458 5 O -0.547 6.547 6 N -0.718 5.718 7 C 0.091 3.909 8 C 0.089 3.911 9 H 0.105 0.895 10 O -0.553 6.553 11 C 0.127 3.873 12 N -0.726 5.726 13 C -0.244 4.244 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.931 5.931 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.133 4.133 22 C -0.177 4.177 23 C -0.164 4.164 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.405 0.595 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.373 0.627 32 H 0.029 0.971 33 H 0.023 0.977 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -25.788 -0.363 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.007 4.007 3 C -0.245 4.245 4 C 0.332 3.668 5 O -0.427 6.427 6 N -0.369 5.369 7 C -0.034 4.034 8 C 0.029 3.971 9 H 0.122 0.878 10 O -0.358 6.358 11 C -0.002 4.002 12 N -0.371 5.371 13 C -0.375 4.375 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.579 5.579 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.151 4.151 22 C -0.213 4.213 23 C -0.201 4.201 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.144 0.856 28 H 0.240 0.760 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.220 0.780 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.443 -25.598 -0.809 25.994 hybrid contribution 0.164 1.085 0.371 1.158 sum -4.279 -24.513 -0.437 24.888 Atomic orbital electron populations 1.21129 0.90719 1.01240 1.04562 1.21764 0.96185 0.92314 0.90400 1.22295 1.00209 0.91823 1.10201 1.18505 0.87342 0.84272 0.76686 1.90769 1.13752 1.87438 1.50785 1.45811 1.10772 1.05920 1.74402 1.22066 0.95322 0.83066 1.02930 1.22404 0.92707 0.92640 0.89350 0.87757 1.86574 1.37469 1.95503 1.16228 1.21203 0.93022 0.87147 0.98784 1.42234 1.05094 1.00748 1.89008 1.19176 0.92234 0.83108 1.43022 0.91253 1.24770 0.95303 0.98021 1.02810 1.69670 1.00226 1.30837 1.57135 0.86241 0.77310 0.84576 0.77882 1.21238 1.21647 1.21237 1.21262 1.00524 0.89106 1.04221 1.23155 1.00083 0.97521 1.00574 1.22993 1.03485 1.01997 0.91638 0.89958 0.92695 0.89536 0.85616 0.75993 0.91182 0.90524 0.78016 0.95379 0.95927 0.77729 0.93417 0.86599 0.87775 0.88313 0.88164 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.22 36.00 0.30 -0.92 16 2 C 0.00 -0.05 5.81 -101.17 -0.59 -0.63 16 3 C -0.22 -2.32 9.67 -37.80 -0.37 -2.68 16 4 C 0.54 7.09 7.72 -12.66 -0.10 6.99 16 5 O -0.55 -8.66 13.10 5.26 0.07 -8.59 16 6 N -0.72 -8.78 5.44 -61.49 -0.33 -9.11 16 7 C 0.09 1.22 5.34 -4.04 -0.02 1.20 16 8 C 0.09 1.38 3.09 -26.73 -0.08 1.30 16 9 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 10 O -0.55 -8.81 13.03 -35.23 -0.46 -9.27 16 11 C 0.13 2.49 5.90 -4.04 -0.02 2.47 16 12 N -0.73 -18.56 5.55 -59.91 -0.33 -18.89 16 13 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 17 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.13 -0.97 6.00 -91.78 -0.55 -1.52 16 22 C -0.18 -1.06 9.86 -26.69 -0.26 -1.32 16 23 C -0.16 -1.02 10.24 -26.69 -0.27 -1.29 16 24 H 0.08 0.93 7.58 -51.93 -0.39 0.54 16 25 H 0.05 0.43 5.44 -51.93 -0.28 0.15 16 26 H 0.09 1.02 6.84 -51.93 -0.36 0.67 16 27 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.41 4.37 8.33 -40.82 -0.34 4.03 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.37 4.96 9.05 45.56 0.41 5.37 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.39 10.60 7.67 -40.82 -0.31 10.29 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.62 5.90 -51.93 -0.31 0.31 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -33.17 336.66 -7.85 -41.03 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -5.35 Total: 13.96 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.22 Total: -3.94 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.06 Total: -55.81 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.39 Total: -17.86 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.17 -7.85 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.839 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds