Wall clock time and date at job start Mon Mar 30 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33000 * 119.99804 * 2 1 4 4 C 1.47101 * 119.99762 * 4.29548 * 3 2 1 5 5 O 1.21615 * 120.00387 * 354.11316 * 4 3 2 6 6 N 1.34780 * 119.99992 * 174.11073 * 4 3 2 7 7 C 1.46493 * 120.00123 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46996 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47355 * 60.00249 * 8 7 6 10 10 O 1.42898 * 109.46957 * 300.00076 * 8 7 6 11 11 C 1.53004 * 109.47171 * 180.02562 * 8 7 6 12 12 N 1.46502 * 109.47082 * 185.00292 * 11 8 7 13 13 C 1.36935 * 119.99746 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00406 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99994 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99517 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99960 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47260 * 59.99675 * 17 15 13 19 19 H 1.48501 * 109.46654 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47062 * 299.99345 * 17 15 13 21 21 C 1.50695 * 120.00054 * 180.02562 * 2 1 3 22 22 C 1.52994 * 117.49989 * 4.38056 * 21 2 1 23 23 C 1.53002 * 117.49747 * 295.71728 * 21 2 1 24 24 H 1.08995 * 109.47508 * 64.20749 * 1 2 3 25 25 H 1.09005 * 109.47012 * 184.20776 * 1 2 3 26 26 H 1.09000 * 109.47325 * 304.20839 * 1 2 3 27 27 H 1.08001 * 119.99758 * 184.29077 * 3 2 1 28 28 H 0.97004 * 119.99535 * 0.02562 * 6 4 3 29 29 H 1.09002 * 109.47339 * 60.00469 * 7 6 4 30 30 H 1.09002 * 109.47310 * 299.99930 * 7 6 4 31 31 H 0.96702 * 114.00258 * 299.99603 * 10 8 7 32 32 H 1.09006 * 109.46571 * 304.99504 * 11 8 7 33 33 H 1.08994 * 109.47317 * 64.99519 * 11 8 7 34 34 H 0.96994 * 119.99881 * 359.97438 * 12 11 8 35 35 H 0.97002 * 119.99569 * 180.02562 * 16 15 13 36 36 H 1.09003 * 115.55002 * 150.05556 * 21 2 1 37 37 H 1.08996 * 117.49974 * 359.97438 * 22 21 2 38 38 H 1.09002 * 117.49883 * 145.02631 * 22 21 2 39 39 H 1.08996 * 117.50084 * 214.97809 * 23 21 2 40 40 H 1.08999 * 117.49832 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4394 2.4239 0.0954 5 8 0.2237 2.4293 0.0664 6 7 2.1157 3.5836 0.2151 7 6 1.3863 4.8505 0.3095 8 6 2.3828 6.0046 0.4360 9 1 3.0307 6.0229 -0.4404 10 8 3.1757 5.8227 1.6108 11 6 1.6210 7.3278 0.5353 12 7 2.5736 8.4408 0.5360 13 6 2.1198 9.7302 0.6173 14 1 1.0597 9.9267 0.6804 15 6 3.0223 10.7849 0.6186 16 7 4.3143 10.5454 0.5422 17 14 2.4033 12.5438 0.7301 18 1 1.6420 12.7215 1.9927 19 1 3.5583 13.4770 0.7122 20 1 1.5176 12.8311 -0.4266 21 6 2.2605 -1.3050 -0.0006 22 6 1.4419 -2.5934 -0.1048 23 6 2.1037 -2.2118 1.2218 24 1 -0.3634 0.4471 -0.9252 25 1 -0.3633 -1.0249 0.0754 26 1 -0.3634 0.5777 0.8499 27 1 3.2497 1.1531 -0.0700 28 1 3.0854 3.5794 0.2379 29 1 0.7381 4.8322 1.1857 30 1 0.7818 4.9895 -0.5868 31 1 2.6637 5.7967 2.4308 32 1 0.9493 7.4251 -0.3177 33 1 1.0413 7.3449 1.4581 34 1 3.5256 8.2644 0.4790 35 1 4.9450 11.2824 0.5434 36 1 3.2335 -1.2859 -0.4915 37 1 0.3583 -2.4971 -0.1725 38 1 1.8765 -3.4220 -0.6639 39 1 2.9733 -2.7896 1.5347 40 1 1.4559 -1.8642 2.0265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568548649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:09 Heat of formation + Delta-G solvation = -64.267637 kcal Electronic energy + Delta-G solvation = -19622.602550 eV Core-core repulsion = 16437.686105 eV Total energy + Delta-G solvation = -3184.916445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96689 -39.23781 -38.59441 -36.10244 -35.30032 -34.10190 -33.21446 -30.84029 -28.79998 -27.06391 -25.18255 -23.97266 -23.20972 -22.77523 -21.45175 -19.62433 -19.20416 -17.99527 -17.84665 -17.19032 -16.89047 -16.42910 -16.06898 -15.92657 -15.60968 -15.22921 -14.91670 -14.41274 -14.32193 -14.03466 -13.89115 -13.68445 -13.17659 -13.00122 -12.96436 -12.72248 -12.50831 -12.21156 -12.11751 -11.98648 -11.81857 -11.75508 -11.32176 -11.07228 -10.96737 -10.59791 -10.24200 -9.74443 -9.02798 -7.95776 -5.25667 0.34864 1.47057 1.50430 1.56635 2.18189 2.27624 2.56092 2.99651 3.34997 3.45835 3.58666 3.61524 3.89141 3.96282 4.00586 4.12301 4.15123 4.20092 4.27052 4.41555 4.61154 4.64492 4.72014 4.80022 4.85920 4.91989 5.00452 5.10746 5.14734 5.20037 5.27027 5.42123 5.47112 5.52183 5.56551 6.25194 6.59847 6.78223 7.27175 7.32157 8.07043 8.30518 9.27266 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.063134 B = 0.002585 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.393576 B =10830.963130 C =11102.549461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.002 3.998 3 C -0.237 4.237 4 C 0.537 3.463 5 O -0.581 6.581 6 N -0.712 5.712 7 C 0.104 3.896 8 C 0.109 3.891 9 H 0.100 0.900 10 O -0.563 6.563 11 C 0.123 3.877 12 N -0.740 5.740 13 C -0.251 4.251 14 H 0.076 0.924 15 C -0.076 4.076 16 N -0.968 5.968 17 Si 0.977 3.023 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.277 1.277 21 C -0.145 4.145 22 C -0.171 4.171 23 C -0.161 4.161 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.414 0.586 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.385 0.615 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.376 0.624 35 H 0.252 0.748 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 -27.200 -0.258 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.000 4.000 3 C -0.258 4.258 4 C 0.328 3.672 5 O -0.464 6.464 6 N -0.363 5.363 7 C -0.021 4.021 8 C 0.049 3.951 9 H 0.117 0.883 10 O -0.369 6.369 11 C -0.005 4.005 12 N -0.383 5.383 13 C -0.382 4.382 14 H 0.094 0.906 15 C -0.269 4.269 16 N -0.618 5.618 17 Si 0.805 3.195 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.203 1.203 21 C -0.163 4.163 22 C -0.208 4.208 23 C -0.198 4.198 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.167 0.833 28 H 0.250 0.750 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.234 0.766 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.209 0.791 35 H 0.061 0.939 36 H 0.147 0.853 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.695 -27.039 -0.694 27.452 hybrid contribution 0.163 1.417 0.354 1.469 sum -4.532 -25.622 -0.340 26.022 Atomic orbital electron populations 1.21061 0.91499 1.02052 1.02868 1.21998 0.95906 0.93402 0.88648 1.22342 1.01199 0.90580 1.11691 1.18993 0.87104 0.85146 0.75918 1.90757 1.15246 1.87932 1.52457 1.45722 1.11145 1.05313 1.74106 1.21794 0.94567 0.82913 1.02833 1.22087 0.92392 0.91397 0.89240 0.88262 1.86552 1.38104 1.95365 1.16887 1.21408 0.92585 0.87428 0.99051 1.42421 1.05394 1.01493 1.89037 1.19612 0.92605 0.84505 1.41522 0.90578 1.25630 0.95541 1.02208 1.03490 1.69832 1.01375 1.31666 1.58963 0.85169 0.76632 0.79439 0.78242 1.20305 1.22091 1.20311 1.21322 1.01111 0.88251 1.05623 1.23253 1.00005 0.97060 1.00463 1.23077 1.03974 1.01375 0.91326 0.91501 0.90533 0.91531 0.83330 0.74992 0.91074 0.90874 0.76641 0.94904 0.95132 0.79139 0.93940 0.85340 0.87895 0.86742 0.86638 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.22 71.24 0.59 -1.76 16 2 C 0.00 0.04 5.81 -17.62 -0.10 -0.06 16 3 C -0.24 -4.61 9.67 23.43 0.23 -4.39 16 4 C 0.54 13.76 7.72 86.57 0.67 14.43 16 5 O -0.58 -18.53 13.10 -4.08 -0.05 -18.58 16 6 N -0.71 -16.75 5.44 -466.71 -2.54 -19.29 16 7 C 0.10 2.72 5.34 86.38 0.46 3.18 16 8 C 0.11 3.31 3.09 30.60 0.09 3.40 16 9 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 10 O -0.56 -17.40 13.03 -148.98 -1.94 -19.34 16 11 C 0.12 4.73 5.90 86.38 0.51 5.24 16 12 N -0.74 -37.87 5.55 -343.44 -1.91 -39.78 16 13 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 14 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 15 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 16 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 17 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C -0.15 -1.78 6.00 -11.54 -0.07 -1.85 16 22 C -0.17 -1.63 9.86 30.62 0.30 -1.32 16 23 C -0.16 -1.61 10.24 30.62 0.31 -1.30 16 24 H 0.07 1.53 7.58 -2.39 -0.02 1.52 16 25 H 0.08 1.12 5.44 -2.38 -0.01 1.11 16 26 H 0.07 1.60 6.84 -2.39 -0.02 1.58 16 27 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 28 H 0.41 8.38 8.33 -92.71 -0.77 7.61 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.38 9.78 9.05 -74.06 -0.67 9.11 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.38 20.79 7.67 -92.71 -0.71 20.08 16 35 H 0.25 15.13 8.31 -92.71 -0.77 14.35 16 36 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 0.99 5.90 -2.39 -0.01 0.98 16 38 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.67 336.66 -0.92 -71.59 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -1.09 Total: 38.41 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 4.30 Total: -1.70 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -4.16 Total: -118.82 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.99 Total: -37.92 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -70.67 -0.92 -71.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.323 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds