Wall clock time and date at job start Mon Mar 30 2020 01:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32990 * 120.00266 * 2 1 4 4 C 1.47101 * 120.00151 * 172.95692 * 3 2 1 5 5 O 1.21612 * 119.99900 * 354.03270 * 4 3 2 6 6 N 1.34777 * 120.00195 * 174.03523 * 4 3 2 7 7 C 1.46502 * 120.00195 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47331 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.47010 * 304.99940 * 8 7 6 10 10 O 1.42904 * 109.47009 * 64.99398 * 8 7 6 11 11 C 1.52997 * 109.47372 * 184.99666 * 8 7 6 12 12 N 1.46496 * 109.47183 * 179.97438 * 11 8 7 13 13 C 1.36944 * 119.99922 * 180.02562 * 12 11 8 14 14 H 1.07997 * 119.99782 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99682 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00178 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99711 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47256 * 59.99605 * 17 15 13 19 19 H 1.48499 * 109.47122 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47074 * 299.99945 * 17 15 13 21 21 C 1.50703 * 119.99695 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.50085 * 1.65192 * 21 2 1 23 23 C 1.53000 * 117.50147 * 293.02427 * 21 2 1 24 24 H 1.09004 * 109.46960 * 89.99976 * 1 2 3 25 25 H 1.08998 * 109.47693 * 210.00262 * 1 2 3 26 26 H 1.09003 * 109.47393 * 330.00635 * 1 2 3 27 27 H 1.07997 * 119.99962 * 352.95409 * 3 2 1 28 28 H 0.97002 * 119.99937 * 359.97438 * 6 4 3 29 29 H 1.08998 * 109.46652 * 299.99470 * 7 6 4 30 30 H 1.08994 * 109.47151 * 59.99579 * 7 6 4 31 31 H 0.96695 * 113.99945 * 60.00530 * 10 8 7 32 32 H 1.08998 * 109.47277 * 300.00110 * 11 8 7 33 33 H 1.09005 * 109.46958 * 60.00353 * 11 8 7 34 34 H 0.96999 * 120.00141 * 359.97438 * 12 11 8 35 35 H 0.97002 * 119.99784 * 180.02562 * 16 15 13 36 36 H 1.09004 * 115.54693 * 147.36200 * 21 2 1 37 37 H 1.09003 * 117.49550 * 359.97438 * 22 21 2 38 38 H 1.09002 * 117.49864 * 145.01724 * 22 21 2 39 39 H 1.08997 * 117.50045 * 214.98229 * 23 21 2 40 40 H 1.09003 * 117.49614 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6346 1.1565 0.1562 5 8 4.2242 0.1196 0.3937 6 7 4.3214 2.3099 0.0362 7 6 5.7782 2.3146 0.1912 8 6 6.3061 3.7389 0.0082 9 1 5.9699 4.1303 -0.9520 10 8 5.8111 4.5692 1.0606 11 6 7.8355 3.7248 0.0460 12 7 8.3409 5.0886 -0.1299 13 6 9.6899 5.3240 -0.1312 14 1 10.3812 4.5042 -0.0030 15 6 10.1688 6.6163 -0.2974 16 7 9.3262 7.6154 -0.4532 17 14 12.0089 6.9373 -0.2999 18 1 12.6429 6.1749 -1.4052 19 1 12.2580 8.3886 -0.4923 20 1 12.5888 6.5038 0.9967 21 6 2.2604 -1.3052 0.0006 22 6 1.4388 -2.5952 -0.0380 23 6 2.1539 -2.1819 1.2500 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6381 2.0835 -0.1147 28 1 3.8512 3.1369 -0.1535 29 1 6.0387 1.9554 1.1868 30 1 6.2255 1.6625 -0.5589 31 1 6.0720 4.2799 1.9456 32 1 8.1716 3.3334 1.0061 33 1 8.2130 3.0915 -0.7569 34 1 7.7200 5.8247 -0.2462 35 1 9.6608 8.5184 -0.5697 36 1 3.2126 -1.2985 -0.5298 37 1 0.3532 -2.4999 -0.0633 38 1 1.8503 -3.4376 -0.5940 39 1 3.0359 -2.7522 1.5412 40 1 1.5392 -1.8144 2.0717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568548650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:13 Heat of formation + Delta-G solvation = -38.252190 kcal Electronic energy + Delta-G solvation = -19769.612253 eV Core-core repulsion = 16585.823923 eV Total energy + Delta-G solvation = -3183.788330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.98240 -38.17932 -37.32285 -34.31380 -33.94448 -33.60775 -31.29953 -29.46578 -28.06772 -25.44387 -23.56041 -22.57395 -22.41672 -21.39998 -20.69000 -18.84488 -17.34110 -17.08491 -16.48259 -16.00883 -15.71254 -15.25340 -14.49945 -14.46211 -14.37629 -13.84081 -13.61113 -13.36800 -13.14486 -12.96378 -12.61044 -12.54132 -12.30865 -11.85461 -11.76727 -11.52758 -10.98425 -10.95606 -10.80412 -10.60807 -10.57180 -10.20154 -9.83981 -9.68718 -9.42365 -9.19763 -8.91460 -8.85450 -6.93916 -5.75963 -3.05730 1.15474 3.22939 3.24311 3.44334 3.48513 3.49807 3.78280 4.32244 4.52833 4.57099 4.73017 4.79398 4.84514 4.90753 4.92627 5.13327 5.20195 5.28131 5.29285 5.39447 5.53879 5.55932 5.63470 5.68619 5.82753 5.91675 5.97492 6.03528 6.14141 6.20860 6.35943 6.48539 6.52365 6.68680 7.57827 7.68001 7.96103 8.28805 8.42351 9.53812 10.10606 10.46595 11.46342 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052335 B = 0.002742 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.887738 B =10208.698292 C =10561.592777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.007 4.007 3 C -0.224 4.224 4 C 0.542 3.458 5 O -0.542 6.542 6 N -0.719 5.719 7 C 0.091 3.909 8 C 0.089 3.911 9 H 0.104 0.896 10 O -0.552 6.552 11 C 0.127 3.873 12 N -0.726 5.726 13 C -0.244 4.244 14 H 0.069 0.931 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.118 4.118 22 C -0.191 4.191 23 C -0.156 4.156 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.404 0.596 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.373 0.627 32 H 0.023 0.977 33 H 0.028 0.972 34 H 0.389 0.611 35 H 0.256 0.744 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 -16.472 1.303 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.008 4.008 3 C -0.245 4.245 4 C 0.332 3.668 5 O -0.422 6.422 6 N -0.370 5.370 7 C -0.033 4.033 8 C 0.029 3.971 9 H 0.121 0.879 10 O -0.357 6.357 11 C -0.002 4.002 12 N -0.371 5.371 13 C -0.375 4.375 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.579 5.579 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.136 4.136 22 C -0.228 4.228 23 C -0.193 4.193 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.146 0.854 28 H 0.239 0.761 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.220 0.780 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.224 0.776 35 H 0.066 0.934 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.032 -16.868 0.979 25.450 hybrid contribution 0.947 0.660 0.283 1.189 sum -18.084 -16.208 1.262 24.318 Atomic orbital electron populations 1.21014 0.91183 1.03282 1.03022 1.21794 0.95159 0.93377 0.90509 1.22378 0.93517 0.98705 1.09929 1.18544 0.87811 0.83407 0.77069 1.90742 1.71129 1.31439 1.48903 1.45860 1.08061 1.10498 1.72574 1.22070 0.80017 0.98625 1.02623 1.22384 0.94808 0.87884 0.92011 0.87860 1.86571 1.76802 1.54945 1.17402 1.21194 0.90294 0.90068 0.98660 1.42230 1.04799 1.02381 1.87676 1.19180 0.83254 0.92791 1.42324 0.91269 1.24766 0.97743 0.95662 1.02702 1.69671 1.32893 0.99167 1.56129 0.86247 0.85091 0.76871 0.77835 1.21236 1.21642 1.21242 1.21478 1.00590 0.87848 1.03638 1.23139 0.99005 0.98687 1.01938 1.22796 1.02650 1.02542 0.91283 0.90276 0.90823 0.90901 0.85400 0.76110 0.91165 0.90577 0.77952 0.95958 0.95409 0.77642 0.93417 0.84868 0.88691 0.88669 0.88507 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 9.49 36.00 0.34 -0.46 16 2 C -0.01 -0.06 5.80 -101.17 -0.59 -0.65 16 3 C -0.22 -2.27 9.62 -37.81 -0.36 -2.63 16 4 C 0.54 7.06 7.67 -12.66 -0.10 6.96 16 5 O -0.54 -8.59 13.31 5.27 0.07 -8.52 16 6 N -0.72 -8.74 5.50 -61.49 -0.34 -9.08 16 7 C 0.09 1.23 5.31 -4.04 -0.02 1.21 16 8 C 0.09 1.39 3.09 -26.73 -0.08 1.30 16 9 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 10 O -0.55 -8.92 13.03 -35.23 -0.46 -9.38 16 11 C 0.13 2.48 5.92 -4.05 -0.02 2.46 16 12 N -0.73 -18.55 5.49 -59.91 -0.33 -18.88 16 13 C -0.24 -6.92 9.99 -15.05 -0.15 -7.07 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 17 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.12 -1.23 4.34 -91.77 -0.40 -1.63 16 22 C -0.19 -1.53 9.79 -26.73 -0.26 -1.79 16 23 C -0.16 -1.47 10.23 -26.73 -0.27 -1.74 16 24 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.40 6.37 -51.93 -0.33 0.07 16 26 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 27 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.40 4.29 8.46 -40.82 -0.35 3.94 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.37 5.10 9.04 45.56 0.41 5.51 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.39 10.63 7.54 -40.82 -0.31 10.32 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.13 1.72 6.23 -51.93 -0.32 1.40 16 37 H 0.09 0.62 6.31 -51.93 -0.33 0.29 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -33.32 337.54 -7.70 -41.02 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.42 Total: 14.52 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.01 Total: -4.50 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.06 Total: -55.77 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.39 Total: -17.90 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.32 -7.70 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.764 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds