Wall clock time and date at job start Mon Mar 30 2020 01:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32990 * 120.00266 * 2 1 4 4 C 1.47101 * 120.00151 * 172.95692 * 3 2 1 5 5 O 1.21612 * 119.99900 * 354.03270 * 4 3 2 6 6 N 1.34777 * 120.00195 * 174.03523 * 4 3 2 7 7 C 1.46502 * 120.00195 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47331 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.47010 * 304.99940 * 8 7 6 10 10 O 1.42904 * 109.47009 * 64.99398 * 8 7 6 11 11 C 1.52997 * 109.47372 * 184.99666 * 8 7 6 12 12 N 1.46496 * 109.47183 * 179.97438 * 11 8 7 13 13 C 1.36944 * 119.99922 * 180.02562 * 12 11 8 14 14 H 1.07997 * 119.99782 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99682 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00178 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99711 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47256 * 59.99605 * 17 15 13 19 19 H 1.48499 * 109.47122 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47074 * 299.99945 * 17 15 13 21 21 C 1.50703 * 119.99695 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.50085 * 1.65192 * 21 2 1 23 23 C 1.53000 * 117.50147 * 293.02427 * 21 2 1 24 24 H 1.09004 * 109.46960 * 89.99976 * 1 2 3 25 25 H 1.08998 * 109.47693 * 210.00262 * 1 2 3 26 26 H 1.09003 * 109.47393 * 330.00635 * 1 2 3 27 27 H 1.07997 * 119.99962 * 352.95409 * 3 2 1 28 28 H 0.97002 * 119.99937 * 359.97438 * 6 4 3 29 29 H 1.08998 * 109.46652 * 299.99470 * 7 6 4 30 30 H 1.08994 * 109.47151 * 59.99579 * 7 6 4 31 31 H 0.96695 * 113.99945 * 60.00530 * 10 8 7 32 32 H 1.08998 * 109.47277 * 300.00110 * 11 8 7 33 33 H 1.09005 * 109.46958 * 60.00353 * 11 8 7 34 34 H 0.96999 * 120.00141 * 359.97438 * 12 11 8 35 35 H 0.97002 * 119.99784 * 180.02562 * 16 15 13 36 36 H 1.09004 * 115.54693 * 147.36200 * 21 2 1 37 37 H 1.09003 * 117.49550 * 359.97438 * 22 21 2 38 38 H 1.09002 * 117.49864 * 145.01724 * 22 21 2 39 39 H 1.08997 * 117.50045 * 214.98229 * 23 21 2 40 40 H 1.09003 * 117.49614 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6346 1.1565 0.1562 5 8 4.2242 0.1196 0.3937 6 7 4.3214 2.3099 0.0362 7 6 5.7782 2.3146 0.1912 8 6 6.3061 3.7389 0.0082 9 1 5.9699 4.1303 -0.9520 10 8 5.8111 4.5692 1.0606 11 6 7.8355 3.7248 0.0460 12 7 8.3409 5.0886 -0.1299 13 6 9.6899 5.3240 -0.1312 14 1 10.3812 4.5042 -0.0030 15 6 10.1688 6.6163 -0.2974 16 7 9.3262 7.6154 -0.4532 17 14 12.0089 6.9373 -0.2999 18 1 12.6429 6.1749 -1.4052 19 1 12.2580 8.3886 -0.4923 20 1 12.5888 6.5038 0.9967 21 6 2.2604 -1.3052 0.0006 22 6 1.4388 -2.5952 -0.0380 23 6 2.1539 -2.1819 1.2500 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6381 2.0835 -0.1147 28 1 3.8512 3.1369 -0.1535 29 1 6.0387 1.9554 1.1868 30 1 6.2255 1.6625 -0.5589 31 1 6.0720 4.2799 1.9456 32 1 8.1716 3.3334 1.0061 33 1 8.2130 3.0915 -0.7569 34 1 7.7200 5.8247 -0.2462 35 1 9.6608 8.5184 -0.5697 36 1 3.2126 -1.2985 -0.5298 37 1 0.3532 -2.4999 -0.0633 38 1 1.8503 -3.4376 -0.5940 39 1 3.0359 -2.7522 1.5412 40 1 1.5392 -1.8144 2.0717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568548650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:13 Heat of formation + Delta-G solvation = -63.694136 kcal Electronic energy + Delta-G solvation = -19770.715498 eV Core-core repulsion = 16585.823923 eV Total energy + Delta-G solvation = -3184.891576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96113 -39.23928 -38.38880 -36.06607 -35.21807 -34.31551 -33.20014 -30.82357 -28.94934 -26.99191 -24.83393 -23.84726 -23.18492 -22.77818 -21.70108 -19.74187 -19.20386 -18.12786 -17.69687 -17.21698 -16.76816 -16.43492 -16.17075 -15.62174 -15.54725 -15.15381 -14.88134 -14.40905 -14.13565 -13.99958 -13.90043 -13.77326 -13.24248 -13.12830 -12.96481 -12.72669 -12.48619 -12.21386 -12.18681 -11.98495 -11.81890 -11.69119 -11.32235 -11.04644 -10.96434 -10.51455 -10.14897 -9.71314 -9.02886 -7.95895 -5.25843 0.37473 1.46856 1.50174 1.56437 2.23539 2.29832 2.56106 3.06563 3.34943 3.46066 3.60222 3.63416 3.85655 4.01695 4.05451 4.15712 4.19942 4.26085 4.40380 4.45007 4.60698 4.66093 4.71892 4.75605 4.82496 4.91060 4.97159 5.10371 5.19386 5.23186 5.26480 5.43382 5.46193 5.50020 5.65395 6.25093 6.62632 6.77816 7.31206 7.32218 8.07200 8.30955 9.27159 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052335 B = 0.002742 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.887738 B =10208.698292 C =10561.592777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.003 3.997 3 C -0.242 4.242 4 C 0.536 3.464 5 O -0.578 6.578 6 N -0.713 5.713 7 C 0.105 3.895 8 C 0.109 3.891 9 H 0.101 0.899 10 O -0.562 6.562 11 C 0.122 3.878 12 N -0.740 5.740 13 C -0.251 4.251 14 H 0.076 0.924 15 C -0.075 4.075 16 N -0.968 5.968 17 Si 0.976 3.024 18 H -0.277 1.277 19 H -0.294 1.294 20 H -0.277 1.277 21 C -0.142 4.142 22 C -0.167 4.167 23 C -0.163 4.163 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.413 0.587 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.384 0.616 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.780 -17.426 1.420 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 C -0.263 4.263 4 C 0.327 3.673 5 O -0.460 6.460 6 N -0.365 5.365 7 C -0.020 4.020 8 C 0.049 3.951 9 H 0.119 0.881 10 O -0.369 6.369 11 C -0.005 4.005 12 N -0.383 5.383 13 C -0.383 4.383 14 H 0.094 0.906 15 C -0.268 4.268 16 N -0.618 5.618 17 Si 0.805 3.195 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.203 1.203 21 C -0.160 4.160 22 C -0.204 4.204 23 C -0.201 4.201 24 H 0.112 0.888 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.249 0.751 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.425 -17.858 1.106 27.154 hybrid contribution 1.345 0.835 0.259 1.605 sum -19.080 -17.023 1.365 25.607 Atomic orbital electron populations 1.21096 0.88401 1.04487 1.04261 1.22135 0.96963 0.92411 0.88386 1.22454 0.91699 1.00286 1.11844 1.19102 0.89134 0.82797 0.76278 1.90734 1.72086 1.32577 1.50621 1.45775 1.07349 1.10946 1.72382 1.21780 0.81026 0.96773 1.02440 1.22087 0.92073 0.89004 0.91950 0.88126 1.86549 1.76704 1.55450 1.18193 1.21394 0.93065 0.87232 0.98832 1.42409 1.03904 1.04257 1.87748 1.19614 0.84736 0.93053 1.40887 0.90626 1.25621 1.02238 0.95601 1.03319 1.69833 1.34795 0.99294 1.57914 0.85176 0.79822 0.76330 0.78200 1.20305 1.22052 1.20323 1.21409 1.00423 0.89769 1.04441 1.23233 0.99974 0.97083 1.00114 1.22836 1.02882 1.02493 0.91840 0.88787 0.89731 0.89613 0.82853 0.75070 0.91258 0.90975 0.76693 0.95232 0.94967 0.79041 0.93923 0.88033 0.86366 0.88238 0.89565 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.49 71.23 0.68 -0.48 16 2 C 0.00 0.05 5.80 -17.62 -0.10 -0.05 16 3 C -0.24 -4.57 9.62 23.43 0.23 -4.35 16 4 C 0.54 13.80 7.67 86.57 0.66 14.47 16 5 O -0.58 -18.69 13.31 -4.07 -0.05 -18.74 16 6 N -0.71 -16.86 5.50 -466.72 -2.57 -19.43 16 7 C 0.10 2.78 5.31 86.38 0.46 3.24 16 8 C 0.11 3.33 3.09 30.59 0.09 3.42 16 9 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 10 O -0.56 -17.78 13.03 -148.98 -1.94 -19.72 16 11 C 0.12 4.74 5.92 86.38 0.51 5.25 16 12 N -0.74 -37.94 5.49 -343.45 -1.89 -39.83 16 13 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 14 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 15 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 16 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 17 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 C -0.14 -2.90 4.34 -11.54 -0.05 -2.95 16 22 C -0.17 -2.37 9.79 30.60 0.30 -2.07 16 23 C -0.16 -2.96 10.23 30.60 0.31 -2.65 16 24 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.08 0.61 6.37 -2.39 -0.02 0.60 16 26 H 0.09 0.61 8.07 -2.39 -0.02 0.59 16 27 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 28 H 0.41 8.30 8.46 -92.71 -0.78 7.52 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.38 10.18 9.04 -74.06 -0.67 9.51 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.38 20.88 7.54 -92.71 -0.70 20.18 16 35 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.10 2.75 6.23 -2.39 -0.01 2.73 16 37 H 0.12 1.13 6.31 -2.39 -0.02 1.11 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.84 337.54 -0.83 -72.67 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -1.09 Total: 39.85 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 4.40 Total: -3.45 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -4.17 Total: -119.08 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -2.00 Total: -38.46 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -71.84 -0.83 -72.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.974 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds