Wall clock time and date at job start Mon Mar 30 2020 00:27:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53008 * 109.47280 * 2 1
4 4 C 1.50702 * 109.46902 * 240.00441 * 2 1 3
5 5 H 1.08003 * 119.99607 * 239.99629 * 4 2 1
6 6 C 1.37873 * 120.00222 * 60.00332 * 4 2 1
7 7 N 1.31508 * 120.00183 * 359.97438 * 6 4 2
8 8 Si 1.86803 * 119.99987 * 180.02562 * 6 4 2
9 9 H 1.48494 * 109.47533 * 89.99418 * 8 6 4
10 10 H 1.48498 * 109.47096 * 209.99712 * 8 6 4
11 11 H 1.48507 * 109.46729 * 329.99362 * 8 6 4
12 12 C 1.52996 * 109.47273 * 119.99912 * 2 1 3
13 13 N 1.46500 * 109.47364 * 300.00099 * 12 2 1
14 14 C 1.34777 * 119.99750 * 179.97438 * 13 12 2
15 15 O 1.21282 * 120.00341 * 0.02562 * 14 13 12
16 16 C 1.50699 * 119.99618 * 180.02562 * 14 13 12
17 17 N 1.46496 * 109.47313 * 180.02562 * 16 14 13
18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 14
19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 16
20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 16
21 21 C 1.53001 * 117.49756 * 248.61806 * 20 18 17
22 22 C 1.52999 * 59.99986 * 252.51526 * 21 20 18
23 23 H 1.08998 * 109.47076 * 300.00326 * 1 2 3
24 24 H 1.09002 * 109.47153 * 59.99681 * 1 2 3
25 25 H 1.08988 * 109.47545 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.46943 * 179.97438 * 3 2 1
27 27 H 1.08992 * 109.47290 * 300.00245 * 3 2 1
28 28 H 1.09001 * 109.46630 * 60.00000 * 3 2 1
29 29 H 0.97001 * 120.00663 * 180.02562 * 7 6 4
30 30 H 1.09000 * 109.47196 * 179.97438 * 12 2 1
31 31 H 1.09004 * 109.46785 * 59.99944 * 12 2 1
32 32 H 0.96996 * 119.99986 * 359.97438 * 13 12 2
33 33 H 1.09000 * 109.47247 * 60.00376 * 16 14 13
34 34 H 1.09004 * 109.47103 * 300.00254 * 16 14 13
35 35 H 0.96999 * 119.99694 * 359.97438 * 17 16 14
36 36 H 1.08996 * 115.55128 * 34.33271 * 20 18 17
37 37 H 1.09004 * 117.49834 * 0.02562 * 21 20 18
38 38 H 1.08997 * 117.49999 * 145.02096 * 21 20 18
39 39 H 1.09004 * 117.50109 * 252.51157 * 22 21 20
40 40 H 1.08998 * 117.52032 * 107.48340 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1315
6 6 1.6992 -0.2392 -2.4828
7 7 0.9428 0.8298 -2.6034
8 14 2.3213 -1.1201 -4.0080
9 1 1.3428 -2.1615 -4.4120
10 1 2.4865 -0.1411 -5.1123
11 1 3.6293 -1.7581 -3.7122
12 6 2.0400 -0.7212 1.2492
13 7 1.5517 -0.0306 2.4454
14 6 1.8770 -0.4915 3.6695
15 8 2.5743 -1.4775 3.7807
16 6 1.3742 0.2186 4.8999
17 7 1.8626 -0.4719 6.0961
18 6 1.5362 -0.0120 7.3202
19 8 0.8385 0.9737 7.4316
20 6 2.0383 -0.7228 8.5507
21 6 1.0086 -1.4563 9.4123
22 6 1.6331 -0.1517 9.9110
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3634 -1.0275 -0.0005
26 1 3.1301 1.4425 0.0005
27 1 1.6767 1.9564 -0.8899
28 1 1.6767 1.9563 0.8900
29 1 0.7082 1.1611 -3.4843
30 1 3.1300 -0.7216 1.2490
31 1 1.6766 -1.7489 1.2492
32 1 0.9943 0.7582 2.3565
33 1 0.2842 0.2185 4.8996
34 1 1.7374 1.2463 4.9003
35 1 2.4203 -1.2605 6.0071
36 1 3.0309 -1.1651 8.4660
37 1 -0.0320 -1.4252 9.0890
38 1 1.3235 -2.3817 9.8946
39 1 2.3591 -0.2187 10.7214
40 1 1.0039 0.7383 9.9160
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001570198208.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:27:34
Heat of formation + Delta-G solvation = -59.737527 kcal
Electronic energy + Delta-G solvation = -20186.048451 eV
Core-core repulsion = 17001.328447 eV
Total energy + Delta-G solvation = -3184.720004 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.27506 -39.25582 -36.66356 -36.28130 -34.44135 -33.42847 -31.03775 -28.58037
-25.77841 -25.64366 -24.97992 -23.60435 -22.70430 -20.46758 -20.20332 -18.90121
-18.00439 -16.60965 -16.36294 -15.88521 -15.73326 -15.16979 -15.02385 -14.65894
-14.38696 -13.95877 -13.24358 -13.16091 -12.90713 -12.72004 -12.35403 -12.25640
-11.84673 -11.43294 -11.24457 -10.92044 -10.91048 -10.80560 -10.73766 -10.44335
-10.25325 -10.07546 -9.79552 -9.69634 -9.34905 -9.27687 -8.84392 -8.57567
-8.39666 -6.06282 -4.16823 2.31782 2.79982 2.81512 3.25571 3.32875
3.36225 3.58345 3.68680 4.36451 4.44450 4.53192 4.60289 4.86228
4.96564 5.20609 5.28957 5.29945 5.31591 5.49204 5.65490 5.83408
6.10228 6.21549 6.23918 6.44078 6.66681 6.77246 6.84751 6.90513
6.95793 7.29115 7.37896 7.50492 7.64835 7.85176 7.96053 8.06576
8.09645 8.32088 8.46835 8.83672 9.49395 10.95160
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.054218 B = 0.003068 C = 0.002987
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 516.305473 B = 9123.084413 C = 9370.681512
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.056 3.944
3 C -0.132 4.132
4 C -0.508 4.508
5 H 0.058 0.942
6 C 0.067 3.933
7 N -0.885 5.885
8 Si 0.894 3.106
9 H -0.281 1.281
10 H -0.287 1.287
11 H -0.274 1.274
12 C 0.131 3.869
13 N -0.709 5.709
14 C 0.500 3.500
15 O -0.552 6.552
16 C 0.097 3.903
17 N -0.711 5.711
18 C 0.544 3.456
19 O -0.545 6.545
20 C -0.194 4.194
21 C -0.153 4.153
22 C -0.148 4.148
23 H 0.007 0.993
24 H 0.086 0.914
25 H 0.027 0.973
26 H 0.027 0.973
27 H 0.086 0.914
28 H 0.007 0.993
29 H 0.260 0.740
30 H 0.057 0.943
31 H 0.057 0.943
32 H 0.401 0.599
33 H 0.097 0.903
34 H 0.097 0.903
35 H 0.413 0.587
36 H 0.126 0.874
37 H 0.100 0.900
38 H 0.105 0.895
39 H 0.103 0.897
40 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.237 -1.301 18.165 18.213
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.055 3.945
3 C -0.190 4.190
4 C -0.546 4.546
5 H 0.076 0.924
6 C -0.135 4.135
7 N -0.524 5.524
8 Si 0.722 3.278
9 H -0.207 1.207
10 H -0.212 1.212
11 H -0.199 1.199
12 C 0.009 3.991
13 N -0.359 5.359
14 C 0.284 3.716
15 O -0.431 6.431
16 C -0.030 4.030
17 N -0.365 5.365
18 C 0.330 3.670
19 O -0.423 6.423
20 C -0.215 4.215
21 C -0.190 4.190
22 C -0.185 4.185
23 H 0.026 0.974
24 H 0.105 0.895
25 H 0.046 0.954
26 H 0.046 0.954
27 H 0.105 0.895
28 H 0.026 0.974
29 H 0.071 0.929
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.237 0.763
33 H 0.115 0.885
34 H 0.115 0.885
35 H 0.251 0.749
36 H 0.143 0.857
37 H 0.118 0.882
38 H 0.123 0.877
39 H 0.121 0.879
40 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 0.162 -1.182 18.105 18.144
hybrid contribution 0.386 -0.464 -1.125 1.277
sum 0.548 -1.646 16.980 17.068
Atomic orbital electron populations
1.21845 0.97696 0.99244 1.00212 1.18366 0.92845 0.92793 0.90476
1.21847 0.98630 0.98304 1.00209 1.20969 1.31631 1.12147 0.89859
0.92423 1.24878 0.94834 0.94892 0.98886 1.69795 1.36574 1.22700
1.23318 0.86563 0.79314 0.79393 0.82557 1.20690 1.21234 1.19903
1.21788 0.98279 0.95856 0.83161 1.46253 1.52146 1.31722 1.05792
1.20389 0.81074 0.84956 0.85152 1.90661 1.38990 1.26795 1.86653
1.21115 1.00949 0.97219 0.83712 1.45633 1.53930 1.32612 1.04346
1.19649 0.79771 0.83915 0.83666 1.90698 1.38375 1.26366 1.86819
1.22162 1.01580 1.06641 0.91103 1.22949 0.97951 0.96679 1.01421
1.22959 1.03269 0.98187 0.94100 0.97435 0.89507 0.95389 0.95382
0.89505 0.97437 0.92937 0.92479 0.92487 0.76297 0.88513 0.88475
0.74883 0.85653 0.88184 0.87702 0.87897 0.87365
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16
2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16
3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16
4 C -0.51 -13.02 8.01 -34.44 -0.28 -13.29 16
5 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16
6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16
7 N -0.89 -23.28 9.35 55.43 0.52 -22.76 16
8 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16
9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16
13 N -0.71 -11.77 4.96 -60.29 -0.30 -12.07 16
14 C 0.50 7.89 7.90 -10.99 -0.09 7.81 16
15 O -0.55 -10.31 15.67 5.56 0.09 -10.22 16
16 C 0.10 1.24 6.15 -5.20 -0.03 1.21 16
17 N -0.71 -8.69 5.53 -61.47 -0.34 -9.03 16
18 C 0.54 6.76 7.61 -10.98 -0.08 6.67 16
19 O -0.54 -8.50 16.26 5.56 0.09 -8.41 16
20 C -0.19 -1.75 6.19 -91.77 -0.57 -2.31 16
21 C -0.15 -1.15 10.23 -26.73 -0.27 -1.43 16
22 C -0.15 -1.18 10.04 -26.73 -0.27 -1.45 16
23 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16
24 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16
25 H 0.03 0.61 8.14 -51.94 -0.42 0.18 16
26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
27 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16
28 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16
29 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16
30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16
31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
32 H 0.40 6.02 6.16 -40.82 -0.25 5.77 16
33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16
35 H 0.41 4.84 7.44 -40.82 -0.30 4.54 16
36 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16
37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16
38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.11 1.02 7.67 -51.93 -0.40 0.62 16
LS Contribution 329.68 15.07 4.97 4.97
Total: -1.00 -29.34 329.68 -7.24 -36.58
By element:
Atomic # 1 Polarization: 14.12 SS G_CDS: -6.07 Total: 8.06 kcal
Atomic # 6 Polarization: -1.36 SS G_CDS: -1.18 Total: -2.54 kcal
Atomic # 7 Polarization: -43.73 SS G_CDS: -0.12 Total: -43.85 kcal
Atomic # 8 Polarization: -18.81 SS G_CDS: 0.18 Total: -18.63 kcal
Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -29.34 -7.24 -36.58 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570198208.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.157 kcal
(2) G-P(sol) polarization free energy of solvation -29.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds