Wall clock time and date at job start Mon Mar 30 2020 00:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47280 * 2 1 4 4 C 1.50702 * 109.46902 * 240.00441 * 2 1 3 5 5 H 1.08003 * 119.99607 * 239.99629 * 4 2 1 6 6 C 1.37873 * 120.00222 * 60.00332 * 4 2 1 7 7 N 1.31508 * 120.00183 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47533 * 89.99418 * 8 6 4 10 10 H 1.48498 * 109.47096 * 209.99712 * 8 6 4 11 11 H 1.48507 * 109.46729 * 329.99362 * 8 6 4 12 12 C 1.52996 * 109.47273 * 119.99912 * 2 1 3 13 13 N 1.46500 * 109.47364 * 300.00099 * 12 2 1 14 14 C 1.34777 * 119.99750 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00341 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99618 * 180.02562 * 14 13 12 17 17 N 1.46496 * 109.47313 * 180.02562 * 16 14 13 18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 16 21 21 C 1.53001 * 117.49756 * 248.61806 * 20 18 17 22 22 C 1.52999 * 59.99986 * 252.51526 * 21 20 18 23 23 H 1.08998 * 109.47076 * 300.00326 * 1 2 3 24 24 H 1.09002 * 109.47153 * 59.99681 * 1 2 3 25 25 H 1.08988 * 109.47545 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46943 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47290 * 300.00245 * 3 2 1 28 28 H 1.09001 * 109.46630 * 60.00000 * 3 2 1 29 29 H 0.97001 * 120.00663 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47196 * 179.97438 * 12 2 1 31 31 H 1.09004 * 109.46785 * 59.99944 * 12 2 1 32 32 H 0.96996 * 119.99986 * 359.97438 * 13 12 2 33 33 H 1.09000 * 109.47247 * 60.00376 * 16 14 13 34 34 H 1.09004 * 109.47103 * 300.00254 * 16 14 13 35 35 H 0.96999 * 119.99694 * 359.97438 * 17 16 14 36 36 H 1.08996 * 115.55128 * 34.33271 * 20 18 17 37 37 H 1.09004 * 117.49834 * 0.02562 * 21 20 18 38 38 H 1.08997 * 117.49999 * 145.02096 * 21 20 18 39 39 H 1.09004 * 117.50109 * 252.51157 * 22 21 20 40 40 H 1.08998 * 117.52032 * 107.48340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7122 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5743 -1.4775 3.7807 16 6 1.3742 0.2186 4.8999 17 7 1.8626 -0.4719 6.0961 18 6 1.5362 -0.0120 7.3202 19 8 0.8385 0.9737 7.4316 20 6 2.0383 -0.7228 8.5507 21 6 1.0086 -1.4563 9.4123 22 6 1.6331 -0.1517 9.9110 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7082 1.1611 -3.4843 30 1 3.1300 -0.7216 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 0.9943 0.7582 2.3565 33 1 0.2842 0.2185 4.8996 34 1 1.7374 1.2463 4.9003 35 1 2.4203 -1.2605 6.0071 36 1 3.0309 -1.1651 8.4660 37 1 -0.0320 -1.4252 9.0890 38 1 1.3235 -2.3817 9.8946 39 1 2.3591 -0.2187 10.7214 40 1 1.0039 0.7383 9.9160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570198208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:34 Heat of formation + Delta-G solvation = -59.737527 kcal Electronic energy + Delta-G solvation = -20186.048451 eV Core-core repulsion = 17001.328447 eV Total energy + Delta-G solvation = -3184.720004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27506 -39.25582 -36.66356 -36.28130 -34.44135 -33.42847 -31.03775 -28.58037 -25.77841 -25.64366 -24.97992 -23.60435 -22.70430 -20.46758 -20.20332 -18.90121 -18.00439 -16.60965 -16.36294 -15.88521 -15.73326 -15.16979 -15.02385 -14.65894 -14.38696 -13.95877 -13.24358 -13.16091 -12.90713 -12.72004 -12.35403 -12.25640 -11.84673 -11.43294 -11.24457 -10.92044 -10.91048 -10.80560 -10.73766 -10.44335 -10.25325 -10.07546 -9.79552 -9.69634 -9.34905 -9.27687 -8.84392 -8.57567 -8.39666 -6.06282 -4.16823 2.31782 2.79982 2.81512 3.25571 3.32875 3.36225 3.58345 3.68680 4.36451 4.44450 4.53192 4.60289 4.86228 4.96564 5.20609 5.28957 5.29945 5.31591 5.49204 5.65490 5.83408 6.10228 6.21549 6.23918 6.44078 6.66681 6.77246 6.84751 6.90513 6.95793 7.29115 7.37896 7.50492 7.64835 7.85176 7.96053 8.06576 8.09645 8.32088 8.46835 8.83672 9.49395 10.95160 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.054218 B = 0.003068 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.305473 B = 9123.084413 C = 9370.681512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.552 6.552 16 C 0.097 3.903 17 N -0.711 5.711 18 C 0.544 3.456 19 O -0.545 6.545 20 C -0.194 4.194 21 C -0.153 4.153 22 C -0.148 4.148 23 H 0.007 0.993 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.007 0.993 29 H 0.260 0.740 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.401 0.599 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.413 0.587 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -1.301 18.165 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.359 5.359 14 C 0.284 3.716 15 O -0.431 6.431 16 C -0.030 4.030 17 N -0.365 5.365 18 C 0.330 3.670 19 O -0.423 6.423 20 C -0.215 4.215 21 C -0.190 4.190 22 C -0.185 4.185 23 H 0.026 0.974 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.251 0.749 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.162 -1.182 18.105 18.144 hybrid contribution 0.386 -0.464 -1.125 1.277 sum 0.548 -1.646 16.980 17.068 Atomic orbital electron populations 1.21845 0.97696 0.99244 1.00212 1.18366 0.92845 0.92793 0.90476 1.21847 0.98630 0.98304 1.00209 1.20969 1.31631 1.12147 0.89859 0.92423 1.24878 0.94834 0.94892 0.98886 1.69795 1.36574 1.22700 1.23318 0.86563 0.79314 0.79393 0.82557 1.20690 1.21234 1.19903 1.21788 0.98279 0.95856 0.83161 1.46253 1.52146 1.31722 1.05792 1.20389 0.81074 0.84956 0.85152 1.90661 1.38990 1.26795 1.86653 1.21115 1.00949 0.97219 0.83712 1.45633 1.53930 1.32612 1.04346 1.19649 0.79771 0.83915 0.83666 1.90698 1.38375 1.26366 1.86819 1.22162 1.01580 1.06641 0.91103 1.22949 0.97951 0.96679 1.01421 1.22959 1.03269 0.98187 0.94100 0.97435 0.89507 0.95389 0.95382 0.89505 0.97437 0.92937 0.92479 0.92487 0.76297 0.88513 0.88475 0.74883 0.85653 0.88184 0.87702 0.87897 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.02 8.01 -34.44 -0.28 -13.29 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.28 9.35 55.43 0.52 -22.76 16 8 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 13 N -0.71 -11.77 4.96 -60.29 -0.30 -12.07 16 14 C 0.50 7.89 7.90 -10.99 -0.09 7.81 16 15 O -0.55 -10.31 15.67 5.56 0.09 -10.22 16 16 C 0.10 1.24 6.15 -5.20 -0.03 1.21 16 17 N -0.71 -8.69 5.53 -61.47 -0.34 -9.03 16 18 C 0.54 6.76 7.61 -10.98 -0.08 6.67 16 19 O -0.54 -8.50 16.26 5.56 0.09 -8.41 16 20 C -0.19 -1.75 6.19 -91.77 -0.57 -2.31 16 21 C -0.15 -1.15 10.23 -26.73 -0.27 -1.43 16 22 C -0.15 -1.18 10.04 -26.73 -0.27 -1.45 16 23 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 24 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.61 8.14 -51.94 -0.42 0.18 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 28 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 29 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.40 6.02 6.16 -40.82 -0.25 5.77 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 4.84 7.44 -40.82 -0.30 4.54 16 36 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.11 1.02 7.67 -51.93 -0.40 0.62 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -29.34 329.68 -7.24 -36.58 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.07 Total: 8.06 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.18 Total: -2.54 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.12 Total: -43.85 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.18 Total: -18.63 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.34 -7.24 -36.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570198208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.157 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds