Wall clock time and date at job start Mon Mar 30 2020 00:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47280 * 2 1 4 4 C 1.50702 * 109.46902 * 240.00441 * 2 1 3 5 5 H 1.08003 * 119.99607 * 239.99629 * 4 2 1 6 6 C 1.37873 * 120.00222 * 60.00332 * 4 2 1 7 7 N 1.31508 * 120.00183 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47533 * 89.99418 * 8 6 4 10 10 H 1.48498 * 109.47096 * 209.99712 * 8 6 4 11 11 H 1.48507 * 109.46729 * 329.99362 * 8 6 4 12 12 C 1.52996 * 109.47273 * 119.99912 * 2 1 3 13 13 N 1.46500 * 109.47364 * 300.00099 * 12 2 1 14 14 C 1.34777 * 119.99750 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00341 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99618 * 180.02562 * 14 13 12 17 17 N 1.46496 * 109.47313 * 180.02562 * 16 14 13 18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 16 21 21 C 1.53001 * 117.49756 * 248.61806 * 20 18 17 22 22 C 1.52999 * 59.99986 * 252.51526 * 21 20 18 23 23 H 1.08998 * 109.47076 * 300.00326 * 1 2 3 24 24 H 1.09002 * 109.47153 * 59.99681 * 1 2 3 25 25 H 1.08988 * 109.47545 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46943 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47290 * 300.00245 * 3 2 1 28 28 H 1.09001 * 109.46630 * 60.00000 * 3 2 1 29 29 H 0.97001 * 120.00663 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47196 * 179.97438 * 12 2 1 31 31 H 1.09004 * 109.46785 * 59.99944 * 12 2 1 32 32 H 0.96996 * 119.99986 * 359.97438 * 13 12 2 33 33 H 1.09000 * 109.47247 * 60.00376 * 16 14 13 34 34 H 1.09004 * 109.47103 * 300.00254 * 16 14 13 35 35 H 0.96999 * 119.99694 * 359.97438 * 17 16 14 36 36 H 1.08996 * 115.55128 * 34.33271 * 20 18 17 37 37 H 1.09004 * 117.49834 * 0.02562 * 21 20 18 38 38 H 1.08997 * 117.49999 * 145.02096 * 21 20 18 39 39 H 1.09004 * 117.50109 * 252.51157 * 22 21 20 40 40 H 1.08998 * 117.52032 * 107.48340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7122 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5743 -1.4775 3.7807 16 6 1.3742 0.2186 4.8999 17 7 1.8626 -0.4719 6.0961 18 6 1.5362 -0.0120 7.3202 19 8 0.8385 0.9737 7.4316 20 6 2.0383 -0.7228 8.5507 21 6 1.0086 -1.4563 9.4123 22 6 1.6331 -0.1517 9.9110 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7082 1.1611 -3.4843 30 1 3.1300 -0.7216 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 0.9943 0.7582 2.3565 33 1 0.2842 0.2185 4.8996 34 1 1.7374 1.2463 4.9003 35 1 2.4203 -1.2605 6.0071 36 1 3.0309 -1.1651 8.4660 37 1 -0.0320 -1.4252 9.0890 38 1 1.3235 -2.3817 9.8946 39 1 2.3591 -0.2187 10.7214 40 1 1.0039 0.7383 9.9160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570198208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:34 Heat of formation + Delta-G solvation = -79.228994 kcal Electronic energy + Delta-G solvation = -20186.893664 eV Core-core repulsion = 17001.328447 eV Total energy + Delta-G solvation = -3185.565218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.35674 -40.47840 -38.22708 -37.11997 -35.52528 -35.06014 -32.82712 -29.75025 -27.56333 -27.41638 -26.55910 -24.60773 -23.28457 -21.72391 -21.22284 -20.63762 -19.00683 -17.97768 -17.60650 -17.33734 -17.00636 -16.53831 -16.23775 -16.02924 -15.51026 -15.06940 -14.83504 -14.67104 -14.32725 -13.98539 -13.64153 -13.51880 -13.16958 -13.09454 -12.68502 -12.60521 -12.41782 -12.25583 -12.13993 -11.54260 -11.48811 -11.46116 -11.33647 -11.07241 -10.96153 -10.69691 -10.40762 -10.29496 -9.99309 -8.02685 -6.18582 1.40834 1.42427 1.45682 1.52213 1.53253 1.78507 2.40907 2.52724 2.93452 3.21288 3.59616 3.76345 3.88042 4.00698 4.21722 4.28822 4.35352 4.41712 4.51717 4.71341 4.76330 4.92843 4.98015 5.03897 5.05913 5.09146 5.19606 5.21284 5.26266 5.32706 5.54616 5.67210 5.67348 6.15226 6.21517 6.42441 6.43065 6.53088 6.86146 7.11729 7.15279 7.49518 8.96139 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.054218 B = 0.003068 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.305473 B = 9123.084413 C = 9370.681512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.051 3.949 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.148 3.852 13 N -0.704 5.704 14 C 0.506 3.494 15 O -0.580 6.580 16 C 0.105 3.895 17 N -0.710 5.710 18 C 0.540 3.460 19 O -0.582 6.582 20 C -0.204 4.204 21 C -0.143 4.143 22 C -0.147 4.147 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.412 0.588 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.417 0.583 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 -1.569 19.711 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.024 3.976 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.022 4.022 17 N -0.364 5.364 18 C 0.329 3.671 19 O -0.462 6.462 20 C -0.225 4.225 21 C -0.180 4.180 22 C -0.184 4.184 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.249 0.751 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.255 0.745 36 H 0.165 0.835 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.323 -1.448 19.660 19.716 hybrid contribution 0.331 -0.387 -1.577 1.658 sum 0.653 -1.835 18.083 18.187 Atomic orbital electron populations 1.21696 0.97171 0.98771 1.00483 1.18360 0.93214 0.93019 0.90386 1.21699 0.98034 0.97910 1.00480 1.21284 1.31696 1.12176 0.91533 0.93558 1.25452 0.95177 0.95567 1.01015 1.69905 1.37024 1.23320 1.23602 0.85771 0.78690 0.78469 0.79946 1.20536 1.20977 1.19979 1.21318 0.97276 0.95177 0.83785 1.46047 1.52434 1.31933 1.05145 1.20815 0.80101 0.84388 0.85497 1.90653 1.40186 1.28152 1.87059 1.21069 1.01570 0.97260 0.82297 1.45683 1.53815 1.32604 1.04263 1.20244 0.78984 0.83494 0.84404 1.90680 1.40131 1.28064 1.87317 1.22254 1.02960 1.07457 0.89856 1.23061 0.97047 0.97567 1.00339 1.23035 1.03536 0.97713 0.94141 0.94305 0.92004 0.96170 0.96159 0.92001 0.94307 0.93059 0.93858 0.93842 0.75100 0.87250 0.87210 0.74491 0.83462 0.89279 0.85105 0.85398 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 2 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -27.29 8.01 25.60 0.21 -27.09 16 5 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.44 5.15 84.65 0.44 1.87 16 7 N -0.90 -47.49 9.35 21.44 0.20 -47.29 16 8 Si 0.94 42.03 29.54 68.60 2.03 44.05 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 C 0.15 5.93 4.50 86.38 0.39 6.31 16 13 N -0.70 -22.25 4.96 -463.06 -2.30 -24.54 16 14 C 0.51 15.18 7.90 87.66 0.69 15.87 16 15 O -0.58 -21.06 15.67 -3.04 -0.05 -21.11 16 16 C 0.11 2.48 6.15 85.63 0.53 3.00 16 17 N -0.71 -16.18 5.53 -466.79 -2.58 -18.76 16 18 C 0.54 12.68 7.61 87.66 0.67 13.35 16 19 O -0.58 -17.65 16.26 -3.03 -0.05 -17.70 16 20 C -0.20 -3.25 6.19 -11.54 -0.07 -3.32 16 21 C -0.14 -1.82 10.23 30.59 0.31 -1.51 16 22 C -0.15 -2.05 10.04 30.59 0.31 -1.74 16 23 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 24 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 28 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 29 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.41 11.32 6.16 -92.71 -0.57 10.75 16 33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.42 9.09 7.44 -92.71 -0.69 8.41 16 36 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.09 1.61 7.67 -2.39 -0.02 1.59 16 Total: -1.00 -62.87 329.68 1.65 -61.23 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.21 Total: 24.61 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 4.60 Total: -0.49 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -4.68 Total: -90.60 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.10 Total: -38.81 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -62.87 1.65 -61.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570198208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.004 kcal (2) G-P(sol) polarization free energy of solvation -62.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds