Wall clock time and date at job start Mon Mar 30 2020 01:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50697 * 120.00062 * 2 1 4 4 N 1.46497 * 109.47528 * 126.66502 * 3 2 1 5 5 C 1.46500 * 120.00048 * 281.23300 * 4 3 2 6 6 C 1.50707 * 109.46991 * 269.99814 * 5 4 3 7 7 H 1.07991 * 119.99945 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99946 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00059 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47266 * 60.00039 * 10 8 6 12 12 H 1.48501 * 109.47243 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47282 * 299.99891 * 10 8 6 14 14 C 1.34775 * 120.00544 * 101.22851 * 4 3 2 15 15 O 1.21279 * 120.00647 * 178.89491 * 14 4 3 16 16 C 1.50703 * 119.99842 * 358.89501 * 14 4 3 17 17 C 1.52998 * 112.85073 * 69.06137 * 16 14 4 18 18 N 1.46895 * 109.47376 * 53.12555 * 17 16 14 19 19 C 1.53781 * 113.69452 * 200.33291 * 16 14 4 20 20 C 1.53780 * 87.08411 * 89.12479 * 19 16 14 21 21 O 1.42901 * 113.61250 * 270.88769 * 20 19 16 22 22 C 1.53785 * 113.61283 * 297.86770 * 16 14 4 23 23 H 1.08002 * 120.00509 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.00124 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00509 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47366 * 6.66305 * 3 2 1 27 27 H 1.09004 * 109.47552 * 246.66212 * 3 2 1 28 28 H 1.09010 * 109.47007 * 29.99440 * 5 4 3 29 29 H 1.08996 * 109.47361 * 149.99863 * 5 4 3 30 30 H 0.96999 * 119.99870 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.46826 * 293.12829 * 17 16 14 32 32 H 1.08994 * 109.47265 * 173.13186 * 17 16 14 33 33 H 1.00903 * 110.99763 * 52.70455 * 18 17 16 34 34 H 1.00897 * 111.00453 * 176.65721 * 18 17 16 35 35 H 1.08997 * 113.61402 * 203.68054 * 19 16 14 36 36 H 1.09003 * 113.60969 * 334.57617 * 19 16 14 37 37 H 1.08992 * 113.61587 * 139.97915 * 20 19 16 38 38 H 0.96699 * 114.00143 * 277.49487 * 21 20 19 39 39 H 1.08994 * 113.61765 * 25.34479 * 22 16 14 40 40 H 1.09000 * 113.61441 * 156.16866 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0218 1.3157 1.1079 5 6 2.5627 1.5937 2.4710 6 6 2.6298 3.0767 2.7310 7 1 2.9798 3.7450 1.9583 8 6 2.2443 3.5800 3.9553 9 7 1.8176 2.7661 4.8962 10 14 2.3280 5.4180 4.2778 11 1 1.4593 6.1310 3.3071 12 1 1.8614 5.7000 5.6591 13 1 3.7294 5.8843 4.1234 14 6 4.3260 1.0696 0.8732 15 8 5.1226 1.0981 1.7872 16 6 4.7944 0.7589 -0.5251 17 6 4.7096 1.9655 -1.4619 18 7 5.4141 3.1045 -0.8585 19 6 6.1495 0.0336 -0.5760 20 6 5.3592 -1.2829 -0.4912 21 8 5.1190 -1.7211 0.8475 22 6 4.1761 -0.5211 -1.1117 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3612 2.1301 0.1192 27 1 2.5977 1.4162 -0.9436 28 1 1.5342 1.2510 2.5850 29 1 3.2010 1.0708 3.1832 30 1 1.5467 3.1202 5.7576 31 1 3.6639 2.2285 -1.6218 32 1 5.1718 1.7171 -2.4172 33 1 6.3529 2.8486 -0.5912 34 1 5.4193 3.8979 -1.4818 35 1 6.6797 0.1647 -1.5192 36 1 6.7785 0.2221 0.2940 37 1 5.7546 -2.0715 -1.1313 38 1 5.8595 -2.2008 1.2433 39 1 3.2121 -0.7806 -0.6743 40 1 4.1656 -0.5412 -2.2015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574930465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:23 Heat of formation + Delta-G solvation = -20.096499 kcal Electronic energy + Delta-G solvation = -22161.209150 eV Core-core repulsion = 18978.208110 eV Total energy + Delta-G solvation = -3183.001040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62749 -37.45062 -35.49809 -35.25473 -33.13939 -32.90516 -31.84273 -28.02198 -26.33342 -25.75322 -25.29033 -23.28106 -21.94163 -20.25460 -19.78840 -17.80941 -16.98941 -16.33503 -16.15828 -15.91995 -15.53308 -14.56402 -14.39914 -14.26546 -14.22879 -13.91261 -13.31592 -12.99060 -12.79396 -12.61361 -12.21908 -11.95167 -11.75256 -11.44287 -11.06606 -11.01922 -10.86606 -10.81409 -10.70011 -10.41088 -10.03828 -9.91217 -9.55360 -9.44894 -9.00755 -8.68532 -8.32304 -8.26495 -7.39676 -5.86867 -3.89562 2.58923 3.42516 3.45980 3.50403 3.71846 4.09129 4.19872 4.47156 4.60677 4.70636 4.83266 4.91282 5.05885 5.32057 5.34864 5.38068 5.46626 5.48886 5.58419 5.61819 5.64968 5.96945 5.97153 6.15034 6.16194 6.23577 6.31819 6.40034 6.94926 7.06702 7.27762 7.33847 7.62650 7.67507 7.81904 7.83275 8.12039 8.45242 8.72289 9.12908 9.43015 9.74710 11.21248 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.007072 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.331702 B = 3958.508894 C = 4363.323986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.129 3.871 4 N -0.588 5.588 5 C 0.252 3.748 6 C -0.515 4.515 7 H 0.060 0.940 8 C 0.058 3.942 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.562 3.438 15 O -0.534 6.534 16 C -0.099 4.099 17 C 0.078 3.922 18 N -0.839 5.839 19 C -0.157 4.157 20 C 0.081 3.919 21 O -0.536 6.536 22 C -0.142 4.142 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.028 0.972 29 H 0.040 0.960 30 H 0.261 0.739 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.342 0.658 34 H 0.338 0.662 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.378 0.622 39 H 0.099 0.901 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.381 -7.218 -16.640 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.187 4.187 3 C 0.005 3.995 4 N -0.318 5.318 5 C 0.133 3.867 6 C -0.554 4.554 7 H 0.078 0.922 8 C -0.143 4.143 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.348 3.652 15 O -0.410 6.410 16 C -0.103 4.103 17 C -0.053 4.053 18 N -0.369 5.369 19 C -0.195 4.195 20 C 0.022 3.978 21 O -0.341 6.341 22 C -0.179 4.179 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.129 0.871 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.225 0.775 39 H 0.117 0.883 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.588 -6.916 -15.466 17.318 hybrid contribution 1.128 0.693 -0.553 1.435 sum 4.716 -6.223 -16.019 17.821 Atomic orbital electron populations 1.23791 0.95867 1.01595 1.01118 1.23606 0.96271 0.99337 0.99458 1.20790 0.92811 0.94822 0.91085 1.47903 1.05698 1.68570 1.09651 1.19165 0.94927 0.96109 0.76524 1.21480 1.42566 0.92566 0.98821 0.92214 1.24931 0.95525 0.97903 0.95962 1.69945 1.44682 1.34493 1.04760 0.86589 0.78415 0.85632 0.76911 1.20445 1.21434 1.20265 1.18947 0.82364 0.76191 0.87728 1.90597 1.53227 1.51942 1.45242 1.22006 0.98095 0.94296 0.95888 1.21902 0.99838 0.90087 0.93469 1.58482 1.23261 1.07401 1.47721 1.23605 0.96338 0.96638 1.02875 1.22563 0.96732 0.93878 0.84651 1.86593 1.43466 1.76966 1.27065 1.23550 1.00337 0.93901 1.00150 0.88411 0.88908 0.87139 0.90360 0.89989 0.95387 0.94195 0.92962 0.90023 0.95416 0.84461 0.84908 0.89759 0.89250 0.91859 0.77489 0.88260 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 29.02 0.42 -2.25 16 2 C -0.17 -2.65 8.65 -36.02 -0.31 -2.97 16 3 C 0.13 2.30 5.21 -5.20 -0.03 2.27 16 4 N -0.59 -13.29 2.46 -176.43 -0.43 -13.72 16 5 C 0.25 7.04 5.13 -5.19 -0.03 7.01 16 6 C -0.52 -15.40 9.39 -34.44 -0.32 -15.72 16 7 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -27.95 13.29 55.43 0.74 -27.21 16 10 Si 0.90 22.94 29.54 -169.99 -5.02 17.92 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.56 12.28 5.15 -10.99 -0.06 12.23 16 15 O -0.53 -14.12 15.44 5.56 0.09 -14.03 16 16 C -0.10 -1.54 0.39 -154.85 -0.06 -1.60 16 17 C 0.08 1.04 5.86 -3.83 -0.02 1.02 16 18 N -0.84 -12.39 9.18 -10.37 -0.10 -12.49 16 19 C -0.16 -2.10 6.74 -25.92 -0.17 -2.27 16 20 C 0.08 1.04 5.28 -25.92 -0.14 0.90 16 21 O -0.54 -8.37 12.53 -35.23 -0.44 -8.81 16 22 C -0.14 -1.82 6.05 -25.91 -0.16 -1.98 16 23 H 0.10 1.38 7.85 -52.49 -0.41 0.97 16 24 H 0.09 1.15 8.06 -52.48 -0.42 0.73 16 25 H 0.11 1.72 5.88 -52.49 -0.31 1.41 16 26 H 0.08 1.46 7.80 -51.93 -0.41 1.06 16 27 H 0.08 1.24 3.35 -51.93 -0.17 1.06 16 28 H 0.03 0.80 8.03 -51.92 -0.42 0.39 16 29 H 0.04 1.27 7.44 -51.93 -0.39 0.88 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.08 1.11 5.55 -51.93 -0.29 0.82 16 32 H 0.03 0.29 8.04 -51.93 -0.42 -0.12 16 33 H 0.34 4.92 8.76 -39.29 -0.34 4.57 16 34 H 0.34 4.03 9.08 -39.29 -0.36 3.67 16 35 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 36 H 0.09 1.42 7.36 -51.93 -0.38 1.04 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.38 4.28 9.12 45.56 0.42 4.69 16 39 H 0.10 1.42 3.62 -51.93 -0.19 1.23 16 40 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -36.82 321.66 -6.19 -43.01 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -4.89 Total: 12.20 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.98 Total: -1.71 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.21 Total: -53.42 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.36 Total: -22.84 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.82 -6.19 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574930465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.916 kcal (2) G-P(sol) polarization free energy of solvation -36.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds