Wall clock time and date at job start Mon Mar 30 2020 01:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50697 * 120.00062 * 2 1 4 4 N 1.46497 * 109.47528 * 126.66502 * 3 2 1 5 5 C 1.46500 * 120.00048 * 281.23300 * 4 3 2 6 6 C 1.50707 * 109.46991 * 269.99814 * 5 4 3 7 7 H 1.07991 * 119.99945 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99946 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00059 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47266 * 60.00039 * 10 8 6 12 12 H 1.48501 * 109.47243 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47282 * 299.99891 * 10 8 6 14 14 C 1.34775 * 120.00544 * 101.22851 * 4 3 2 15 15 O 1.21279 * 120.00647 * 178.89491 * 14 4 3 16 16 C 1.50703 * 119.99842 * 358.89501 * 14 4 3 17 17 C 1.52998 * 112.85073 * 69.06137 * 16 14 4 18 18 N 1.46895 * 109.47376 * 53.12555 * 17 16 14 19 19 C 1.53781 * 113.69452 * 200.33291 * 16 14 4 20 20 C 1.53780 * 87.08411 * 89.12479 * 19 16 14 21 21 O 1.42901 * 113.61250 * 270.88769 * 20 19 16 22 22 C 1.53785 * 113.61283 * 297.86770 * 16 14 4 23 23 H 1.08002 * 120.00509 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.00124 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00509 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47366 * 6.66305 * 3 2 1 27 27 H 1.09004 * 109.47552 * 246.66212 * 3 2 1 28 28 H 1.09010 * 109.47007 * 29.99440 * 5 4 3 29 29 H 1.08996 * 109.47361 * 149.99863 * 5 4 3 30 30 H 0.96999 * 119.99870 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.46826 * 293.12829 * 17 16 14 32 32 H 1.08994 * 109.47265 * 173.13186 * 17 16 14 33 33 H 1.00903 * 110.99763 * 52.70455 * 18 17 16 34 34 H 1.00897 * 111.00453 * 176.65721 * 18 17 16 35 35 H 1.08997 * 113.61402 * 203.68054 * 19 16 14 36 36 H 1.09003 * 113.60969 * 334.57617 * 19 16 14 37 37 H 1.08992 * 113.61587 * 139.97915 * 20 19 16 38 38 H 0.96699 * 114.00143 * 277.49487 * 21 20 19 39 39 H 1.08994 * 113.61765 * 25.34479 * 22 16 14 40 40 H 1.09000 * 113.61441 * 156.16866 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0218 1.3157 1.1079 5 6 2.5627 1.5937 2.4710 6 6 2.6298 3.0767 2.7310 7 1 2.9798 3.7450 1.9583 8 6 2.2443 3.5800 3.9553 9 7 1.8176 2.7661 4.8962 10 14 2.3280 5.4180 4.2778 11 1 1.4593 6.1310 3.3071 12 1 1.8614 5.7000 5.6591 13 1 3.7294 5.8843 4.1234 14 6 4.3260 1.0696 0.8732 15 8 5.1226 1.0981 1.7872 16 6 4.7944 0.7589 -0.5251 17 6 4.7096 1.9655 -1.4619 18 7 5.4141 3.1045 -0.8585 19 6 6.1495 0.0336 -0.5760 20 6 5.3592 -1.2829 -0.4912 21 8 5.1190 -1.7211 0.8475 22 6 4.1761 -0.5211 -1.1117 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3612 2.1301 0.1192 27 1 2.5977 1.4162 -0.9436 28 1 1.5342 1.2510 2.5850 29 1 3.2010 1.0708 3.1832 30 1 1.5467 3.1202 5.7576 31 1 3.6639 2.2285 -1.6218 32 1 5.1718 1.7171 -2.4172 33 1 6.3529 2.8486 -0.5912 34 1 5.4193 3.8979 -1.4818 35 1 6.6797 0.1647 -1.5192 36 1 6.7785 0.2221 0.2940 37 1 5.7546 -2.0715 -1.1313 38 1 5.8595 -2.2008 1.2433 39 1 3.2121 -0.7806 -0.6743 40 1 4.1656 -0.5412 -2.2015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574930465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:22 Heat of formation + Delta-G solvation = -51.206743 kcal Electronic energy + Delta-G solvation = -22162.558191 eV Core-core repulsion = 18978.208110 eV Total energy + Delta-G solvation = -3184.350082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92244 -38.93125 -37.14641 -36.44017 -35.01883 -34.16436 -33.57574 -29.93342 -27.70630 -27.04803 -26.57399 -25.17505 -23.27264 -21.61023 -21.06154 -19.30731 -18.52992 -18.06982 -17.58531 -17.20499 -17.08692 -16.44442 -15.81750 -15.56914 -15.43523 -15.25449 -14.76143 -14.34954 -14.13886 -14.05148 -13.93026 -13.45185 -13.12513 -13.04134 -12.91467 -12.64027 -12.53588 -12.28023 -12.16221 -12.01595 -11.88682 -11.62969 -11.00664 -10.61212 -10.60520 -10.31637 -10.27012 -9.44111 -9.28840 -8.17318 -6.31521 1.34346 1.35812 1.40651 1.48097 2.12731 2.39107 2.60586 3.10496 3.20840 3.39807 3.61662 3.71211 3.87056 4.00725 4.10780 4.11988 4.27150 4.32053 4.51613 4.63660 4.73049 4.77889 4.92196 4.93926 5.03552 5.07590 5.15327 5.18849 5.26744 5.35698 5.61342 5.74569 5.81087 6.04117 6.14945 6.29099 6.65492 6.77550 6.92934 7.00441 7.34710 7.74942 8.89388 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.007072 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.331702 B = 3958.508894 C = 4363.323986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.185 4.185 3 C 0.128 3.872 4 N -0.596 5.596 5 C 0.272 3.728 6 C -0.532 4.532 7 H 0.052 0.948 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.553 3.447 15 O -0.595 6.595 16 C -0.105 4.105 17 C 0.080 3.920 18 N -0.868 5.868 19 C -0.148 4.148 20 C 0.076 3.924 21 O -0.575 6.575 22 C -0.134 4.134 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.012 0.988 29 H -0.014 1.014 30 H 0.265 0.735 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.342 0.658 34 H 0.353 0.647 35 H 0.127 0.873 36 H 0.054 0.946 37 H 0.106 0.894 38 H 0.390 0.610 39 H 0.083 0.917 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 -7.061 -19.807 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.204 4.204 3 C 0.006 3.994 4 N -0.326 5.326 5 C 0.150 3.850 6 C -0.571 4.571 7 H 0.070 0.930 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.793 3.207 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.205 1.205 14 C 0.343 3.657 15 O -0.476 6.476 16 C -0.109 4.109 17 C -0.051 4.051 18 N -0.400 5.400 19 C -0.186 4.186 20 C 0.017 3.983 21 O -0.382 6.382 22 C -0.171 4.171 23 H 0.116 0.884 24 H 0.135 0.865 25 H 0.133 0.867 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.030 0.970 29 H 0.005 0.995 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.145 0.855 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.240 0.760 39 H 0.101 0.899 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.472 -6.769 -18.693 20.182 hybrid contribution 1.141 0.605 0.463 1.372 sum 4.613 -6.164 -18.230 19.789 Atomic orbital electron populations 1.24033 0.95450 1.02814 0.98569 1.23473 0.96728 0.98429 1.01723 1.21004 0.92178 0.95599 0.90642 1.47903 1.07362 1.68634 1.08659 1.18514 0.92713 0.94680 0.79089 1.21676 1.42953 0.93307 0.99142 0.93000 1.25891 0.94760 1.03278 0.95539 1.70075 1.45068 1.36841 1.05231 0.85461 0.78431 0.79234 0.77594 1.18490 1.20222 1.20464 1.20108 0.81196 0.74310 0.90131 1.90552 1.54642 1.54343 1.48026 1.21972 1.00106 0.96825 0.91992 1.21960 0.99988 0.88630 0.94494 1.58469 1.23516 1.08835 1.49178 1.23671 0.94944 0.96550 1.03468 1.22856 0.96681 0.94875 0.83905 1.86548 1.44936 1.77464 1.29250 1.23703 0.99345 0.91376 1.02717 0.88360 0.86487 0.86658 0.91848 0.86782 0.96978 0.99544 0.92582 0.90352 0.90684 0.84504 0.83310 0.85474 0.92755 0.87624 0.76045 0.89870 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 14.32 67.79 0.97 -3.68 16 2 C -0.18 -5.70 8.65 25.66 0.22 -5.48 16 3 C 0.13 4.54 5.21 85.63 0.45 4.99 16 4 N -0.60 -27.95 2.46 -830.50 -2.04 -30.00 16 5 C 0.27 16.12 5.13 85.64 0.44 16.56 16 6 C -0.53 -33.07 9.39 25.60 0.24 -32.83 16 7 H 0.05 3.23 7.81 -2.92 -0.02 3.21 16 8 C 0.00 0.21 5.46 84.65 0.46 0.67 16 9 N -0.93 -59.77 13.29 21.45 0.28 -59.49 16 10 Si 0.97 47.76 29.54 68.60 2.03 49.78 16 11 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 14 C 0.55 24.90 5.15 87.66 0.45 25.35 16 15 O -0.60 -33.43 15.44 -3.03 -0.05 -33.48 16 16 C -0.11 -3.09 0.39 -52.40 -0.02 -3.11 16 17 C 0.08 1.89 5.86 86.30 0.51 2.40 16 18 N -0.87 -24.49 9.18 -186.73 -1.71 -26.20 16 19 C -0.15 -3.64 6.74 31.12 0.21 -3.43 16 20 C 0.08 1.74 5.28 31.12 0.16 1.90 16 21 O -0.57 -18.05 12.53 -148.98 -1.87 -19.92 16 22 C -0.13 -2.99 6.05 31.12 0.19 -2.80 16 23 H 0.10 2.66 7.85 -2.91 -0.02 2.63 16 24 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 25 H 0.12 3.48 5.88 -2.91 -0.02 3.47 16 26 H 0.06 2.40 7.80 -2.39 -0.02 2.38 16 27 H 0.11 3.24 3.35 -2.38 -0.01 3.23 16 28 H 0.01 0.74 8.03 -2.38 -0.02 0.72 16 29 H -0.01 -0.93 7.44 -2.39 -0.02 -0.95 16 30 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 31 H 0.08 1.89 5.55 -2.39 -0.01 1.88 16 32 H 0.08 1.15 8.04 -2.39 -0.02 1.13 16 33 H 0.34 9.55 8.76 -89.69 -0.79 8.77 16 34 H 0.35 7.77 9.08 -89.70 -0.81 6.96 16 35 H 0.13 2.01 8.02 -2.39 -0.02 1.99 16 36 H 0.05 1.74 7.36 -2.39 -0.02 1.72 16 37 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.39 9.12 9.12 -74.06 -0.68 8.45 16 39 H 0.08 2.19 3.62 -2.39 -0.01 2.18 16 40 H 0.14 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -86.36 321.66 -0.27 -86.63 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -1.19 Total: 32.13 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.28 Total: 0.54 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.47 Total: -115.68 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -1.91 Total: -53.40 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -86.36 -0.27 -86.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574930465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.421 kcal (2) G-P(sol) polarization free energy of solvation -86.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds