Wall clock time and date at job start Mon Mar 30 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 H 1.08996 * 109.47457 * 54.31958 * 3 2 1 5 5 C 1.50703 * 109.46915 * 174.32007 * 3 2 1 6 6 H 1.07994 * 119.99942 * 25.66544 * 5 3 2 7 7 C 1.37878 * 119.99601 * 205.66938 * 5 3 2 8 8 N 1.31508 * 120.00229 * 353.27300 * 7 5 3 9 9 Si 1.86810 * 119.99822 * 173.27562 * 7 5 3 10 10 H 1.48503 * 109.46802 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47002 * 239.99941 * 9 7 5 12 12 H 1.48496 * 109.47101 * 119.99909 * 9 7 5 13 13 N 1.46505 * 109.47061 * 294.31536 * 3 2 1 14 14 C 1.34774 * 119.99873 * 85.00304 * 13 3 2 15 15 O 1.21278 * 119.99859 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99987 * 180.02562 * 14 13 3 17 17 C 1.54269 * 112.65815 * 61.01089 * 16 14 13 18 18 N 1.48506 * 104.73841 * 99.05866 * 17 16 14 19 19 C 1.48497 * 104.20549 * 39.78728 * 18 17 16 20 20 C 1.54265 * 104.74018 * 320.21362 * 19 18 17 21 21 H 1.09000 * 112.13648 * 261.24909 * 20 19 18 22 22 C 1.54393 * 109.35398 * 134.82528 * 20 19 18 23 23 O 1.44378 * 104.91745 * 272.63701 * 22 20 19 24 24 C 1.45415 * 105.74547 * 319.66123 * 23 22 20 25 25 H 1.09004 * 109.47535 * 300.00633 * 1 2 3 26 26 H 1.09001 * 109.47323 * 59.99953 * 1 2 3 27 27 H 1.08999 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47424 * 239.99726 * 2 1 3 29 29 H 1.08998 * 109.47147 * 119.99567 * 2 1 3 30 30 H 0.96998 * 119.99951 * 354.66830 * 8 7 5 31 31 H 0.96998 * 119.99587 * 265.00550 * 13 3 2 32 32 H 1.09000 * 110.38887 * 217.87695 * 17 16 14 33 33 H 1.09001 * 110.38432 * 340.13396 * 17 16 14 34 34 H 1.00901 * 111.00205 * 280.23810 * 18 17 16 35 35 H 1.09001 * 110.38716 * 79.02761 * 19 18 17 36 36 H 1.08995 * 110.38990 * 201.39901 * 19 18 17 37 37 H 1.08996 * 110.34754 * 31.49971 * 22 20 19 38 38 H 1.09001 * 110.35330 * 153.77298 * 22 20 19 39 39 H 1.08997 * 110.16039 * 281.38999 * 24 23 22 40 40 H 1.08995 * 111.02466 * 158.78326 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5959 1.9850 0.8347 5 6 3.5404 1.4449 0.1406 6 1 4.1145 0.5899 -0.1843 7 6 4.1800 2.5387 0.6842 8 7 3.4991 3.6301 0.9574 9 14 6.0141 2.4704 1.0325 10 1 6.5434 1.1399 0.6387 11 1 6.2510 2.6875 2.4822 12 1 6.7056 3.5290 0.2538 13 7 1.6664 2.0926 -1.2587 14 6 0.4505 2.6590 -1.3898 15 8 -0.3346 2.6302 -0.4659 16 6 0.0661 3.3270 -2.6847 17 6 0.0744 2.3532 -3.8812 18 7 -1.3487 1.9718 -4.0677 19 6 -2.0971 3.2341 -3.8405 20 6 -1.3744 3.9114 -2.6578 21 1 -1.8841 3.7363 -1.7103 22 6 -1.1719 5.4094 -2.9719 23 8 0.0786 5.4727 -3.6907 24 6 0.9663 4.5354 -3.0214 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5645 3.6943 0.7060 31 1 2.2943 2.1152 -1.9978 32 1 0.4542 2.8511 -4.7734 33 1 0.6777 1.4749 -3.6517 34 1 -1.6234 1.2639 -3.4033 35 1 -2.0512 3.8675 -4.7264 36 1 -3.1333 3.0195 -3.5795 37 1 -1.9863 5.7794 -3.5947 38 1 -1.1081 5.9851 -2.0486 39 1 1.3620 4.9794 -2.1080 40 1 1.7803 4.2301 -3.6789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577042918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:03 Heat of formation + Delta-G solvation = -90.230595 kcal Electronic energy + Delta-G solvation = -22287.741507 eV Core-core repulsion = 19101.699224 eV Total energy + Delta-G solvation = -3186.042283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88702 -38.35520 -36.12115 -35.19120 -32.40241 -31.98065 -30.42116 -30.19123 -26.70307 -26.02681 -23.47541 -23.22366 -22.54188 -21.16138 -19.92460 -18.90070 -17.77809 -16.79892 -16.09428 -15.45590 -15.24079 -15.19781 -14.90680 -14.47410 -13.98154 -13.85149 -13.64119 -13.09253 -12.63285 -12.37095 -12.26480 -12.14964 -11.91025 -11.55451 -11.15055 -11.04721 -10.89880 -10.87192 -10.85504 -10.77401 -10.42248 -10.25266 -9.94798 -9.85484 -9.21196 -8.79548 -8.71512 -8.59278 -7.86570 -6.61351 -4.43178 3.25671 3.32423 3.33469 3.48634 3.81422 4.10303 4.23878 4.28619 4.35406 4.88089 4.94360 5.06991 5.14942 5.20741 5.31207 5.42691 5.63464 5.68214 5.71171 5.73201 5.85590 5.90414 5.92679 5.95385 5.98550 6.13729 6.17739 6.54845 6.59516 6.75141 6.77385 6.86701 6.98376 7.21391 7.26069 7.56764 7.81453 8.20361 8.51640 8.68886 9.07571 9.37010 10.75340 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.006735 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.595050 B = 4156.408307 C = 4854.186269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.242 3.758 4 H 0.053 0.947 5 C -0.609 4.609 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.889 5.889 9 Si 1.073 2.927 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.697 5.697 14 C 0.517 3.483 15 O -0.554 6.554 16 C -0.152 4.152 17 C 0.058 3.942 18 N -0.664 5.664 19 C 0.049 3.951 20 C -0.141 4.141 21 H 0.111 0.889 22 C 0.056 3.944 23 O -0.374 6.374 24 C 0.067 3.933 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.277 0.723 31 H 0.386 0.614 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.338 0.662 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 -0.469 -8.839 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.143 3.857 4 H 0.071 0.929 5 C -0.647 4.647 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.522 5.522 9 Si 0.900 3.100 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.345 5.345 14 C 0.301 3.699 15 O -0.433 6.433 16 C -0.158 4.158 17 C -0.072 4.072 18 N -0.289 5.289 19 C -0.081 4.081 20 C -0.161 4.161 21 H 0.129 0.871 22 C -0.021 4.021 23 O -0.293 6.293 24 C -0.010 4.010 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.219 0.781 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.182 0.433 -8.449 10.478 hybrid contribution -0.884 -0.761 0.213 1.186 sum -7.067 -0.328 -8.235 10.857 Atomic orbital electron populations 1.21842 0.97120 0.98653 1.02122 1.21820 0.94123 0.99113 1.00569 1.18982 0.95032 0.88589 0.83109 0.92917 1.22175 0.91019 1.04981 1.46538 0.92442 1.26014 1.06693 0.92204 0.92852 1.70692 1.11835 1.27551 1.42097 0.83497 0.73883 0.75480 0.77106 1.21238 1.21000 1.21270 1.47699 1.13321 1.55001 1.18528 1.19860 0.83377 0.79172 0.87535 1.90617 1.51281 1.60512 1.40937 1.23564 0.96999 0.98442 0.96764 1.23088 0.91123 0.97570 0.95415 1.63250 1.03243 1.08694 1.53751 1.23082 0.97280 0.91221 0.96498 1.23843 0.94797 0.95898 1.01604 0.87053 1.23340 0.87189 0.94886 0.96721 1.89196 1.23439 1.62627 1.54009 1.23491 0.92383 0.87148 0.98003 0.92979 0.93318 0.95194 0.93642 0.92264 0.91142 0.78112 0.89168 0.90288 0.84620 0.89828 0.90764 0.88880 0.92243 0.91353 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.53 37.15 0.32 -2.39 16 2 C -0.12 -2.44 5.58 -26.73 -0.15 -2.59 16 3 C 0.24 5.71 1.72 -69.07 -0.12 5.59 16 4 H 0.05 1.45 6.57 -51.93 -0.34 1.11 16 5 C -0.61 -15.48 8.49 -34.44 -0.29 -15.78 16 6 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 7 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 8 N -0.89 -25.24 13.56 55.43 0.75 -24.49 16 9 Si 1.07 23.41 29.91 -169.99 -5.08 18.33 16 10 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.21 4.78 -54.93 -0.26 -14.47 16 14 C 0.52 10.04 5.21 -10.99 -0.06 9.99 16 15 O -0.55 -12.43 12.76 5.56 0.07 -12.36 16 16 C -0.15 -2.36 0.91 -152.95 -0.14 -2.50 16 17 C 0.06 0.80 6.52 -2.27 -0.01 0.78 16 18 N -0.66 -8.70 7.62 -109.88 -0.84 -9.54 16 19 C 0.05 0.60 6.93 -2.28 -0.02 0.58 16 20 C -0.14 -2.00 3.71 -87.91 -0.33 -2.32 16 21 H 0.11 1.77 6.96 -51.93 -0.36 1.41 16 22 C 0.06 0.75 6.92 37.89 0.26 1.01 16 23 O -0.37 -5.74 11.66 -35.23 -0.41 -6.15 16 24 C 0.07 1.04 6.55 37.89 0.25 1.29 16 25 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 26 H 0.05 0.95 5.63 -51.93 -0.29 0.65 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.28 8.04 6.93 -40.82 -0.28 7.76 16 31 H 0.39 7.34 8.59 -40.82 -0.35 6.99 16 32 H 0.09 1.17 7.57 -51.93 -0.39 0.78 16 33 H 0.08 1.09 7.75 -51.93 -0.40 0.68 16 34 H 0.34 4.48 8.92 -39.29 -0.35 4.13 16 35 H 0.08 0.99 7.61 -51.93 -0.40 0.59 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.00 7.78 -51.93 -0.40 0.60 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.22 7.98 -51.93 -0.41 0.80 16 40 H 0.10 1.38 7.73 -51.93 -0.40 0.98 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -28.77 314.57 -7.53 -36.31 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.12 Total: 13.25 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.38 Total: -5.61 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.35 Total: -48.50 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.34 Total: -18.51 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.08 Total: 18.33 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.77 -7.53 -36.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577042918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.923 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds