Wall clock time and date at job start Mon Mar 30 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 H 1.08996 * 109.47457 * 54.31958 * 3 2 1 5 5 C 1.50703 * 109.46915 * 174.32007 * 3 2 1 6 6 H 1.07994 * 119.99942 * 25.66544 * 5 3 2 7 7 C 1.37878 * 119.99601 * 205.66938 * 5 3 2 8 8 N 1.31508 * 120.00229 * 353.27300 * 7 5 3 9 9 Si 1.86810 * 119.99822 * 173.27562 * 7 5 3 10 10 H 1.48503 * 109.46802 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47002 * 239.99941 * 9 7 5 12 12 H 1.48496 * 109.47101 * 119.99909 * 9 7 5 13 13 N 1.46505 * 109.47061 * 294.31536 * 3 2 1 14 14 C 1.34774 * 119.99873 * 85.00304 * 13 3 2 15 15 O 1.21278 * 119.99859 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99987 * 180.02562 * 14 13 3 17 17 C 1.54269 * 112.65815 * 61.01089 * 16 14 13 18 18 N 1.48506 * 104.73841 * 99.05866 * 17 16 14 19 19 C 1.48497 * 104.20549 * 39.78728 * 18 17 16 20 20 C 1.54265 * 104.74018 * 320.21362 * 19 18 17 21 21 H 1.09000 * 112.13648 * 261.24909 * 20 19 18 22 22 C 1.54393 * 109.35398 * 134.82528 * 20 19 18 23 23 O 1.44378 * 104.91745 * 272.63701 * 22 20 19 24 24 C 1.45415 * 105.74547 * 319.66123 * 23 22 20 25 25 H 1.09004 * 109.47535 * 300.00633 * 1 2 3 26 26 H 1.09001 * 109.47323 * 59.99953 * 1 2 3 27 27 H 1.08999 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47424 * 239.99726 * 2 1 3 29 29 H 1.08998 * 109.47147 * 119.99567 * 2 1 3 30 30 H 0.96998 * 119.99951 * 354.66830 * 8 7 5 31 31 H 0.96998 * 119.99587 * 265.00550 * 13 3 2 32 32 H 1.09000 * 110.38887 * 217.87695 * 17 16 14 33 33 H 1.09001 * 110.38432 * 340.13396 * 17 16 14 34 34 H 1.00901 * 111.00205 * 280.23810 * 18 17 16 35 35 H 1.09001 * 110.38716 * 79.02761 * 19 18 17 36 36 H 1.08995 * 110.38990 * 201.39901 * 19 18 17 37 37 H 1.08996 * 110.34754 * 31.49971 * 22 20 19 38 38 H 1.09001 * 110.35330 * 153.77298 * 22 20 19 39 39 H 1.08997 * 110.16039 * 281.38999 * 24 23 22 40 40 H 1.08995 * 111.02466 * 158.78326 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5959 1.9850 0.8347 5 6 3.5404 1.4449 0.1406 6 1 4.1145 0.5899 -0.1843 7 6 4.1800 2.5387 0.6842 8 7 3.4991 3.6301 0.9574 9 14 6.0141 2.4704 1.0325 10 1 6.5434 1.1399 0.6387 11 1 6.2510 2.6875 2.4822 12 1 6.7056 3.5290 0.2538 13 7 1.6664 2.0926 -1.2587 14 6 0.4505 2.6590 -1.3898 15 8 -0.3346 2.6302 -0.4659 16 6 0.0661 3.3270 -2.6847 17 6 0.0744 2.3532 -3.8812 18 7 -1.3487 1.9718 -4.0677 19 6 -2.0971 3.2341 -3.8405 20 6 -1.3744 3.9114 -2.6578 21 1 -1.8841 3.7363 -1.7103 22 6 -1.1719 5.4094 -2.9719 23 8 0.0786 5.4727 -3.6907 24 6 0.9663 4.5354 -3.0214 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5645 3.6943 0.7060 31 1 2.2943 2.1152 -1.9978 32 1 0.4542 2.8511 -4.7734 33 1 0.6777 1.4749 -3.6517 34 1 -1.6234 1.2639 -3.4033 35 1 -2.0512 3.8675 -4.7264 36 1 -3.1333 3.0195 -3.5795 37 1 -1.9863 5.7794 -3.5947 38 1 -1.1081 5.9851 -2.0486 39 1 1.3620 4.9794 -2.1080 40 1 1.7803 4.2301 -3.6789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577042918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:03 Heat of formation + Delta-G solvation = -112.619893 kcal Electronic energy + Delta-G solvation = -22288.712380 eV Core-core repulsion = 19101.699224 eV Total energy + Delta-G solvation = -3187.013156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18442 -39.92177 -37.31753 -36.94272 -34.29905 -33.57008 -31.61738 -31.50550 -28.55957 -27.14084 -25.20330 -24.53527 -23.91403 -22.48170 -21.56687 -20.41835 -19.37592 -18.37300 -17.42864 -16.87230 -16.57279 -16.50647 -16.25061 -15.89541 -15.66548 -15.26409 -15.12087 -14.91667 -14.32858 -13.94745 -13.56817 -13.27751 -13.07659 -12.90654 -12.73546 -12.64248 -12.55967 -12.29868 -12.13088 -11.99831 -11.96231 -11.91716 -11.68446 -11.11206 -10.92401 -10.73329 -10.53825 -9.75746 -9.62541 -8.71160 -6.53113 1.55384 1.59905 1.70176 1.78899 2.34747 2.53031 2.83613 3.05805 3.10529 3.26334 3.70268 3.80578 3.92960 3.98737 4.05234 4.23367 4.27369 4.31643 4.40399 4.50231 4.52240 4.61319 4.64948 4.66867 4.83908 4.86943 4.89226 5.02351 5.04793 5.14175 5.25150 5.45112 5.48824 5.59237 5.73184 5.96235 6.12482 6.19849 6.44170 6.93565 7.35212 7.45367 8.64306 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.006735 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.595050 B = 4156.408307 C = 4854.186269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 C 0.247 3.753 4 H 0.004 0.996 5 C -0.612 4.612 6 H 0.062 0.938 7 C -0.016 4.016 8 N -0.920 5.920 9 Si 1.120 2.880 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.281 1.281 13 N -0.695 5.695 14 C 0.516 3.484 15 O -0.586 6.586 16 C -0.147 4.147 17 C 0.066 3.934 18 N -0.662 5.662 19 C 0.056 3.944 20 C -0.141 4.141 21 H 0.090 0.910 22 C 0.054 3.946 23 O -0.377 6.377 24 C 0.070 3.930 25 H 0.027 0.973 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.259 0.741 31 H 0.395 0.605 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.337 0.663 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 -1.301 -10.941 13.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C 0.146 3.854 4 H 0.022 0.978 5 C -0.651 4.651 6 H 0.080 0.920 7 C -0.218 4.218 8 N -0.555 5.555 9 Si 0.942 3.058 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.343 5.343 14 C 0.303 3.697 15 O -0.468 6.468 16 C -0.153 4.153 17 C -0.065 4.065 18 N -0.287 5.287 19 C -0.073 4.073 20 C -0.161 4.161 21 H 0.108 0.892 22 C -0.023 4.023 23 O -0.296 6.296 24 C -0.007 4.007 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.229 0.771 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.250 -0.413 -10.583 12.298 hybrid contribution -0.948 -0.514 0.889 1.397 sum -7.198 -0.927 -9.694 12.110 Atomic orbital electron populations 1.21695 0.95897 1.00133 1.00789 1.21739 0.95151 0.97125 1.01102 1.18706 0.94085 0.89777 0.82829 0.97812 1.22432 0.91964 1.04723 1.45940 0.92013 1.27357 1.10245 0.91776 0.92416 1.70830 1.11051 1.29034 1.44621 0.82899 0.69447 0.76625 0.76868 1.18947 1.21156 1.20640 1.47206 1.14119 1.55319 1.17668 1.20395 0.82384 0.78335 0.88636 1.90605 1.52118 1.61504 1.42600 1.23482 0.97947 0.98702 0.95150 1.23088 0.91743 0.96990 0.94667 1.63285 1.02858 1.09023 1.53498 1.23127 0.97788 0.90623 0.95776 1.23833 0.93871 0.96655 1.01759 0.89154 1.23500 0.87433 0.94295 0.97031 1.89195 1.23985 1.62495 1.53878 1.23429 0.93045 0.86976 0.97268 0.95345 0.93629 0.92152 0.92023 0.92627 0.93069 0.77097 0.87685 0.90339 0.84743 0.88543 0.88960 0.85473 0.93336 0.94529 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.53 71.98 0.61 -4.27 16 2 C -0.11 -4.64 5.58 30.59 0.17 -4.46 16 3 C 0.25 11.92 1.72 44.25 0.08 12.00 16 4 H 0.00 0.22 6.57 -2.39 -0.02 0.21 16 5 C -0.61 -31.35 8.49 25.60 0.22 -31.13 16 6 H 0.06 3.07 7.82 -2.91 -0.02 3.04 16 7 C -0.02 -0.85 5.45 84.66 0.46 -0.39 16 8 N -0.92 -54.05 13.56 21.45 0.29 -53.76 16 9 Si 1.12 46.93 29.91 68.60 2.05 48.99 16 10 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 11 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.69 -28.73 4.78 -446.08 -2.13 -30.86 16 14 C 0.52 20.44 5.21 87.66 0.46 20.89 16 15 O -0.59 -27.30 12.76 -3.02 -0.04 -27.34 16 16 C -0.15 -4.47 0.91 -51.17 -0.05 -4.52 16 17 C 0.07 1.64 6.52 86.42 0.56 2.21 16 18 N -0.66 -15.59 7.62 -501.55 -3.82 -19.42 16 19 C 0.06 1.21 6.93 86.42 0.60 1.81 16 20 C -0.14 -3.82 3.71 -9.04 -0.03 -3.86 16 21 H 0.09 2.88 6.96 -2.39 -0.02 2.87 16 22 C 0.05 1.37 6.92 72.45 0.50 1.87 16 23 O -0.38 -10.94 11.66 -148.98 -1.74 -12.68 16 24 C 0.07 2.15 6.55 72.46 0.47 2.63 16 25 H 0.03 1.19 7.89 -2.38 -0.02 1.17 16 26 H 0.04 1.75 5.63 -2.39 -0.01 1.73 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.26 15.85 6.93 -92.71 -0.64 15.21 16 31 H 0.39 14.98 8.59 -92.71 -0.80 14.18 16 32 H 0.11 2.39 7.57 -2.39 -0.02 2.37 16 33 H 0.08 1.99 7.75 -2.39 -0.02 1.97 16 34 H 0.34 8.19 8.92 -89.69 -0.80 7.39 16 35 H 0.10 1.89 7.61 -2.39 -0.02 1.87 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.13 2.35 7.78 -2.39 -0.02 2.33 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.34 7.98 -2.39 -0.02 1.33 16 40 H 0.12 3.14 7.73 -2.39 -0.02 3.12 16 Total: -1.00 -63.66 314.57 -1.74 -65.41 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.41 Total: 36.89 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 4.05 Total: -7.22 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -5.66 Total: -104.04 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.78 Total: -40.02 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.05 Total: 48.99 kcal Total: -63.66 -1.74 -65.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577042918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.212 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds