Wall clock time and date at job start Mon Mar 30 2020 00:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00216 * 2 1 4 4 O 1.21284 * 120.00191 * 354.99628 * 3 2 1 5 5 C 1.50700 * 120.00066 * 175.00141 * 3 2 1 6 6 C 1.50704 * 115.54956 * 65.95102 * 5 3 2 7 7 O 1.21290 * 119.99619 * 245.66005 * 6 5 3 8 8 N 1.34771 * 120.00154 * 65.66472 * 6 5 3 9 9 C 1.46502 * 120.00008 * 174.97951 * 8 6 5 10 10 C 1.52998 * 109.46952 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47519 * 299.99760 * 10 9 8 12 12 C 1.52998 * 109.47234 * 60.00112 * 10 9 8 13 13 C 1.50709 * 109.47118 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99561 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99911 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00353 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99676 * 180.02562 * 15 13 10 18 18 H 1.48508 * 109.47361 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47381 * 120.00137 * 17 15 13 20 20 H 1.48502 * 109.47177 * 240.00236 * 17 15 13 21 21 C 1.52996 * 117.50033 * 211.61820 * 5 3 2 22 22 C 1.52998 * 117.50074 * 280.28094 * 5 3 2 23 23 H 1.08993 * 109.46831 * 300.00410 * 1 2 3 24 24 H 1.08998 * 109.46856 * 60.00413 * 1 2 3 25 25 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 26 26 H 0.97010 * 119.99927 * 179.97438 * 2 1 3 27 27 H 0.96997 * 120.00075 * 354.96919 * 8 6 5 28 28 H 1.09003 * 109.47036 * 59.99520 * 9 8 6 29 29 H 1.08998 * 109.46968 * 299.99910 * 9 8 6 30 30 H 1.08995 * 109.46332 * 60.00049 * 11 10 9 31 31 H 1.08993 * 109.47079 * 180.02562 * 11 10 9 32 32 H 1.08997 * 109.46896 * 300.00115 * 11 10 9 33 33 H 1.09006 * 109.47132 * 59.99762 * 12 10 9 34 34 H 1.09002 * 109.47113 * 179.97438 * 12 10 9 35 35 H 1.08992 * 109.47238 * 299.99785 * 12 10 9 36 36 H 0.96998 * 120.00248 * 179.97438 * 16 15 13 37 37 H 1.08997 * 117.50395 * 214.99960 * 21 5 3 38 38 H 1.09001 * 117.49695 * 0.02562 * 21 5 3 39 39 H 1.09005 * 117.49505 * 359.97417 * 22 5 3 40 40 H 1.08999 * 117.49951 * 144.97330 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5360 2.2155 -0.0916 5 6 3.6416 1.1696 0.1137 6 6 4.3825 0.5630 -1.0500 7 8 5.0265 -0.4532 -0.8956 8 7 4.3296 1.1496 -2.2622 9 6 5.1365 0.6240 -3.3662 10 6 4.8928 1.4645 -4.6212 11 6 3.4111 1.4016 -4.9975 12 6 5.2881 2.9169 -4.3470 13 6 5.7233 0.9242 -5.7568 14 1 6.3607 0.0668 -5.5992 15 6 5.6692 1.5245 -6.9969 16 7 4.8933 2.5688 -7.1886 17 14 6.6981 0.8542 -8.4045 18 1 7.4789 -0.3176 -7.9329 19 1 5.8053 0.4386 -9.5161 20 1 7.6276 1.9085 -8.8840 21 6 4.2943 2.3563 0.8254 22 6 4.2449 0.9869 1.5078 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.9501 -0.8401 0.0004 27 1 3.7572 1.9198 -2.4037 28 1 4.8545 -0.4106 -3.5618 29 1 6.1920 0.6684 -3.0980 30 1 2.8108 1.7927 -4.1760 31 1 3.2376 2.0000 -5.8918 32 1 3.1295 0.3669 -5.1928 33 1 6.3438 2.9617 -4.0790 34 1 5.1149 3.5156 -5.2413 35 1 4.6879 3.3080 -3.5257 36 1 4.8556 2.9913 -8.0609 37 1 5.2596 2.6982 0.4521 38 1 3.6368 3.1350 1.2118 39 1 3.5549 0.8654 2.3428 40 1 5.1775 0.4277 1.5833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626123474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:46 Heat of formation + Delta-G solvation = -55.548410 kcal Electronic energy + Delta-G solvation = -21225.551053 eV Core-core repulsion = 18041.012702 eV Total energy + Delta-G solvation = -3184.538350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58675 -38.86397 -36.69302 -35.79103 -34.68265 -33.31144 -30.87549 -27.79842 -26.07861 -25.72707 -25.24323 -23.69098 -22.55789 -21.45898 -19.70268 -18.83213 -18.16019 -16.32631 -16.02642 -15.91563 -15.35342 -15.04070 -14.84480 -14.61306 -14.22608 -13.83014 -13.03998 -12.94809 -12.85839 -12.74473 -12.45850 -12.21065 -11.74734 -11.40679 -11.24171 -11.15815 -10.89534 -10.73671 -10.62829 -10.39882 -10.22597 -10.10226 -9.64799 -9.57435 -9.31717 -9.24815 -8.78973 -8.51424 -8.35573 -6.02649 -4.13255 2.36178 2.72870 2.98097 3.26556 3.33285 3.35757 3.40751 3.83153 4.38996 4.52148 4.67631 4.73498 4.93387 5.07152 5.24030 5.33040 5.45107 5.55830 5.63309 5.71989 5.96430 6.18052 6.22040 6.27361 6.49254 6.71383 6.84483 6.90433 6.97691 7.00413 7.27831 7.34076 7.55238 7.68580 7.94224 8.00043 8.04894 8.13328 8.36342 8.54594 8.87490 9.52736 10.98778 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.004701 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.987879 B = 5954.280345 C = 6235.419408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.558 3.442 4 O -0.528 6.528 5 C -0.198 4.198 6 C 0.545 3.455 7 O -0.542 6.542 8 N -0.705 5.705 9 C 0.131 3.869 10 C 0.055 3.945 11 C -0.131 4.131 12 C -0.132 4.132 13 C -0.506 4.506 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.128 4.128 22 C -0.129 4.129 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.407 0.593 27 H 0.402 0.598 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.006 0.994 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.007 0.993 36 H 0.260 0.740 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -2.575 14.757 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.379 5.379 3 C 0.343 3.657 4 O -0.403 6.403 5 C -0.205 4.205 6 C 0.329 3.671 7 O -0.421 6.421 8 N -0.354 5.354 9 C 0.009 3.991 10 C 0.055 3.945 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.544 4.544 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.165 4.165 22 C -0.167 4.167 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.241 0.759 27 H 0.238 0.762 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.753 -2.408 14.619 15.893 hybrid contribution 0.390 -0.425 -0.982 1.139 sum -5.363 -2.833 13.637 14.925 Atomic orbital electron populations 1.21577 0.79186 1.02436 1.02445 1.45731 1.07850 1.08825 1.75520 1.19151 0.87051 0.83784 0.75710 1.90721 1.69506 1.31498 1.48602 1.21531 0.92825 1.09493 0.96646 1.18990 0.81193 0.84014 0.82946 1.90686 1.43454 1.23847 1.84075 1.46321 1.45739 1.33428 1.09925 1.21802 0.93385 0.98133 0.85797 1.18372 0.94017 0.91989 0.90140 1.21828 0.96230 0.99863 1.00944 1.21835 0.97610 0.99246 1.00242 1.21001 1.25082 1.14254 0.94103 0.92375 1.24884 0.95328 0.94812 0.98494 1.69815 1.38328 1.21138 1.23043 0.86514 0.80161 0.78987 0.82205 1.19767 1.21067 1.21041 1.23073 1.02142 0.91261 1.00047 1.23046 1.02932 0.99646 0.91054 0.92208 0.91861 0.90474 0.75906 0.76212 0.92496 0.92502 0.97518 0.89518 0.95488 0.95408 0.89529 0.97387 0.93019 0.87215 0.86971 0.87775 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.71 59.85 0.64 1.45 16 2 N -0.73 -8.36 5.71 -67.08 -0.38 -8.74 16 3 C 0.56 7.96 7.06 -10.99 -0.08 7.88 16 4 O -0.53 -8.99 16.72 5.55 0.09 -8.90 16 5 C -0.20 -2.73 2.28 -156.81 -0.36 -3.09 16 6 C 0.55 9.35 7.07 -10.99 -0.08 9.27 16 7 O -0.54 -10.65 16.71 5.55 0.09 -10.56 16 8 N -0.70 -12.93 4.96 -60.29 -0.30 -13.23 16 9 C 0.13 2.77 4.51 -4.04 -0.02 2.75 16 10 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 12 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 13 C -0.51 -13.22 8.01 -34.44 -0.28 -13.49 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.88 -23.72 9.35 55.43 0.52 -23.20 16 17 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.13 -1.49 9.76 -26.70 -0.26 -1.75 16 22 C -0.13 -1.39 9.76 -26.69 -0.26 -1.66 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.41 4.15 8.83 -40.82 -0.36 3.79 16 27 H 0.40 7.29 6.17 -40.82 -0.25 7.04 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 31 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 2.19 6.07 -51.93 -0.31 1.88 16 35 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.11 1.24 8.00 -51.93 -0.42 0.83 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.11 1.25 8.00 -51.93 -0.42 0.84 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -29.99 331.46 -6.39 -36.38 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.13 Total: 8.82 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.26 Total: -1.21 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.16 Total: -45.17 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.19 Total: -19.46 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.99 -6.39 -36.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626123474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.169 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds