Wall clock time and date at job start Mon Mar 30 2020 00:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00216 * 2 1 4 4 O 1.21284 * 120.00191 * 354.99628 * 3 2 1 5 5 C 1.50700 * 120.00066 * 175.00141 * 3 2 1 6 6 C 1.50704 * 115.54956 * 65.95102 * 5 3 2 7 7 O 1.21290 * 119.99619 * 245.66005 * 6 5 3 8 8 N 1.34771 * 120.00154 * 65.66472 * 6 5 3 9 9 C 1.46502 * 120.00008 * 174.97951 * 8 6 5 10 10 C 1.52998 * 109.46952 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47519 * 299.99760 * 10 9 8 12 12 C 1.52998 * 109.47234 * 60.00112 * 10 9 8 13 13 C 1.50709 * 109.47118 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99561 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99911 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00353 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99676 * 180.02562 * 15 13 10 18 18 H 1.48508 * 109.47361 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47381 * 120.00137 * 17 15 13 20 20 H 1.48502 * 109.47177 * 240.00236 * 17 15 13 21 21 C 1.52996 * 117.50033 * 211.61820 * 5 3 2 22 22 C 1.52998 * 117.50074 * 280.28094 * 5 3 2 23 23 H 1.08993 * 109.46831 * 300.00410 * 1 2 3 24 24 H 1.08998 * 109.46856 * 60.00413 * 1 2 3 25 25 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 26 26 H 0.97010 * 119.99927 * 179.97438 * 2 1 3 27 27 H 0.96997 * 120.00075 * 354.96919 * 8 6 5 28 28 H 1.09003 * 109.47036 * 59.99520 * 9 8 6 29 29 H 1.08998 * 109.46968 * 299.99910 * 9 8 6 30 30 H 1.08995 * 109.46332 * 60.00049 * 11 10 9 31 31 H 1.08993 * 109.47079 * 180.02562 * 11 10 9 32 32 H 1.08997 * 109.46896 * 300.00115 * 11 10 9 33 33 H 1.09006 * 109.47132 * 59.99762 * 12 10 9 34 34 H 1.09002 * 109.47113 * 179.97438 * 12 10 9 35 35 H 1.08992 * 109.47238 * 299.99785 * 12 10 9 36 36 H 0.96998 * 120.00248 * 179.97438 * 16 15 13 37 37 H 1.08997 * 117.50395 * 214.99960 * 21 5 3 38 38 H 1.09001 * 117.49695 * 0.02562 * 21 5 3 39 39 H 1.09005 * 117.49505 * 359.97417 * 22 5 3 40 40 H 1.08999 * 117.49951 * 144.97330 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5360 2.2155 -0.0916 5 6 3.6416 1.1696 0.1137 6 6 4.3825 0.5630 -1.0500 7 8 5.0265 -0.4532 -0.8956 8 7 4.3296 1.1496 -2.2622 9 6 5.1365 0.6240 -3.3662 10 6 4.8928 1.4645 -4.6212 11 6 3.4111 1.4016 -4.9975 12 6 5.2881 2.9169 -4.3470 13 6 5.7233 0.9242 -5.7568 14 1 6.3607 0.0668 -5.5992 15 6 5.6692 1.5245 -6.9969 16 7 4.8933 2.5688 -7.1886 17 14 6.6981 0.8542 -8.4045 18 1 7.4789 -0.3176 -7.9329 19 1 5.8053 0.4386 -9.5161 20 1 7.6276 1.9085 -8.8840 21 6 4.2943 2.3563 0.8254 22 6 4.2449 0.9869 1.5078 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.9501 -0.8401 0.0004 27 1 3.7572 1.9198 -2.4037 28 1 4.8545 -0.4106 -3.5618 29 1 6.1920 0.6684 -3.0980 30 1 2.8108 1.7927 -4.1760 31 1 3.2376 2.0000 -5.8918 32 1 3.1295 0.3669 -5.1928 33 1 6.3438 2.9617 -4.0790 34 1 5.1149 3.5156 -5.2413 35 1 4.6879 3.3080 -3.5257 36 1 4.8556 2.9913 -8.0609 37 1 5.2596 2.6982 0.4521 38 1 3.6368 3.1350 1.2118 39 1 3.5549 0.8654 2.3428 40 1 5.1775 0.4277 1.5833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626123474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:46 Heat of formation + Delta-G solvation = -76.077801 kcal Electronic energy + Delta-G solvation = -21226.441274 eV Core-core repulsion = 18041.012702 eV Total energy + Delta-G solvation = -3185.428572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76350 -40.17969 -38.31066 -36.97932 -35.68495 -35.03384 -32.74106 -28.75468 -27.65684 -27.61465 -27.10915 -24.94858 -23.44097 -22.69870 -20.90926 -20.62262 -19.44229 -17.86148 -17.34154 -17.08916 -16.86581 -16.62389 -16.16626 -15.93219 -15.47089 -15.12922 -14.81916 -14.41091 -14.21376 -13.99528 -13.84909 -13.24017 -13.15215 -13.13491 -12.72354 -12.62200 -12.57270 -12.30506 -12.22422 -12.13570 -11.71841 -11.52459 -11.33950 -11.14411 -10.82839 -10.69268 -10.42217 -10.23344 -10.02783 -8.02963 -6.19550 1.22909 1.41891 1.45471 1.46260 1.55305 2.04607 2.09260 2.46465 2.74608 3.20876 3.57724 3.60170 3.72640 3.80123 4.36393 4.41018 4.47332 4.58401 4.60211 4.65074 4.68378 4.85220 4.90817 4.94097 5.01019 5.06503 5.11065 5.14668 5.29497 5.31336 5.50651 5.62484 5.65949 6.09102 6.17985 6.32674 6.40267 6.50929 6.84978 7.02415 7.12405 7.48712 8.96462 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.004701 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.987879 B = 5954.280345 C = 6235.419408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.720 5.720 3 C 0.557 3.443 4 O -0.561 6.561 5 C -0.215 4.215 6 C 0.550 3.450 7 O -0.568 6.568 8 N -0.705 5.705 9 C 0.147 3.853 10 C 0.050 3.950 11 C -0.119 4.119 12 C -0.121 4.121 13 C -0.525 4.525 14 H 0.049 0.951 15 C 0.027 3.973 16 N -0.902 5.902 17 Si 0.948 3.052 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.123 4.123 22 C -0.106 4.106 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.110 0.890 26 H 0.414 0.586 27 H 0.404 0.596 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.260 0.740 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 -3.020 16.119 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.342 3.658 4 O -0.439 6.439 5 C -0.221 4.221 6 C 0.336 3.664 7 O -0.447 6.447 8 N -0.354 5.354 9 C 0.024 3.976 10 C 0.050 3.950 11 C -0.177 4.177 12 C -0.179 4.179 13 C -0.564 4.564 14 H 0.067 0.933 15 C -0.173 4.173 16 N -0.540 5.540 17 Si 0.775 3.225 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.160 4.160 22 C -0.143 4.143 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.249 0.751 27 H 0.241 0.759 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.067 -2.878 15.999 17.351 hybrid contribution 0.464 -0.320 -1.373 1.484 sum -5.603 -3.198 14.625 15.985 Atomic orbital electron populations 1.21768 0.77774 1.04528 1.01962 1.45789 1.08871 1.08386 1.73962 1.19217 0.87131 0.83988 0.75498 1.90705 1.70089 1.32679 1.50464 1.21411 0.92446 1.11708 0.96584 1.19431 0.80587 0.83334 0.83082 1.90672 1.44619 1.24972 1.84476 1.46201 1.45670 1.33647 1.09928 1.21370 0.93260 0.97061 0.85917 1.18371 0.93698 0.92480 0.90484 1.21661 0.96458 0.99071 1.00531 1.21671 0.97769 0.98584 0.99844 1.21272 1.25524 1.14210 0.95380 0.93289 1.25494 0.96290 0.95116 1.00408 1.69929 1.39004 1.21708 1.23389 0.85659 0.78834 0.78358 0.79663 1.19705 1.20864 1.20781 1.23186 1.02005 0.91554 0.99299 1.23194 1.02927 0.98416 0.89754 0.91690 0.93322 0.87161 0.75091 0.75944 0.93713 0.93425 0.95613 0.91870 0.96027 0.95761 0.91951 0.95157 0.93049 0.87044 0.86166 0.85260 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.71 127.77 1.37 2.73 16 2 N -0.72 -15.12 5.71 -484.53 -2.77 -17.88 16 3 C 0.56 14.94 7.06 87.66 0.62 15.56 16 4 O -0.56 -18.43 16.72 -3.04 -0.05 -18.48 16 5 C -0.22 -5.52 2.28 -53.67 -0.12 -5.64 16 6 C 0.55 18.22 7.07 87.66 0.62 18.84 16 7 O -0.57 -21.75 16.71 -3.06 -0.05 -21.81 16 8 N -0.70 -25.29 4.96 -463.05 -2.29 -27.58 16 9 C 0.15 6.22 4.51 86.38 0.39 6.61 16 10 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 11 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 12 C -0.12 -5.51 8.08 71.98 0.58 -4.93 16 13 C -0.53 -27.64 8.01 25.60 0.21 -27.43 16 14 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 15 C 0.03 1.40 5.15 84.66 0.44 1.84 16 16 N -0.90 -48.62 9.35 21.45 0.20 -48.42 16 17 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 C -0.12 -2.60 9.76 30.62 0.30 -2.30 16 22 C -0.11 -1.99 9.76 30.62 0.30 -1.69 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.41 7.55 8.83 -92.70 -0.82 6.73 16 27 H 0.40 14.22 6.17 -92.71 -0.57 13.65 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.02 1.05 6.86 -2.39 -0.02 1.03 16 31 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 35 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 36 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 37 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.12 2.39 8.00 -2.39 -0.02 2.37 16 39 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.11 2.21 8.00 -2.39 -0.02 2.19 16 Total: -1.00 -63.69 331.46 1.97 -61.72 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.34 Total: 27.00 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 5.25 Total: 0.97 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -4.86 Total: -93.89 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.10 Total: -40.29 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -63.69 1.97 -61.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626123474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.358 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds