Wall clock time and date at job start Mon Mar 30 2020 01:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 3 2 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 3 2 8 8 N 1.31514 * 119.99726 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00037 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47160 * 59.99611 * 9 7 5 11 11 H 1.48499 * 109.47085 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47121 * 299.99671 * 9 7 5 13 13 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 14 14 C 1.34776 * 120.00216 * 84.99451 * 13 3 2 15 15 O 1.21283 * 119.99606 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00388 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47604 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.59663 * 304.68211 * 17 16 14 19 19 C 1.53336 * 109.60571 * 184.18550 * 17 16 14 20 20 C 1.53054 * 108.43729 * 172.72941 * 19 17 16 21 21 C 1.50173 * 109.89648 * 48.88934 * 20 19 17 22 22 O 1.21276 * 118.24803 * 162.39902 * 21 20 19 23 23 N 1.33355 * 123.50402 * 342.41230 * 21 20 19 24 24 C 1.45755 * 124.10697 * 2.25051 * 23 21 20 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 0.97005 * 120.00053 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99585 * 265.00132 * 13 3 2 32 32 H 1.08999 * 109.47402 * 300.00593 * 16 14 13 33 33 H 1.09001 * 109.46870 * 60.00274 * 16 14 13 34 34 H 1.08998 * 109.67539 * 292.45010 * 19 17 16 35 35 H 1.08999 * 109.67565 * 52.97808 * 19 17 16 36 36 H 1.09008 * 109.40052 * 288.75208 * 20 19 17 37 37 H 1.09005 * 109.33129 * 168.97819 * 20 19 17 38 38 H 0.96998 * 117.94483 * 182.22173 * 23 21 20 39 39 H 1.08999 * 109.29734 * 220.58451 * 24 23 21 40 40 H 1.09005 * 109.13301 * 101.10815 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3374 2.1731 9 14 6.0050 0.8802 1.3810 10 1 6.5004 2.2802 1.3807 11 1 6.3979 0.2168 2.6502 12 1 6.5967 0.1456 0.2341 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3394 2.6325 -0.4340 16 6 0.0360 3.3377 -2.6547 17 6 -1.3827 3.8946 -2.5209 18 1 -2.0628 3.0955 -2.2261 19 6 -1.8311 4.4879 -3.8618 20 6 -3.3091 4.8700 -3.7521 21 6 -3.5394 5.6668 -2.5001 22 8 -4.5583 6.3189 -2.4140 23 7 -2.6833 5.6957 -1.4781 24 6 -1.4023 5.0005 -1.4651 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2719 2.1232 -1.9978 32 1 0.7274 4.1530 -2.8678 33 1 0.0671 2.6130 -3.4683 34 1 -1.2389 5.3748 -4.0871 35 1 -1.7008 3.7487 -4.6522 36 1 -3.9159 3.9649 -3.7221 37 1 -3.5928 5.4673 -4.6187 38 1 -2.9283 6.2120 -0.6943 39 1 -1.2405 4.5617 -0.4805 40 1 -0.6062 5.7145 -1.6764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632382438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:14 Heat of formation + Delta-G solvation = -99.383465 kcal Electronic energy + Delta-G solvation = -20991.451481 eV Core-core repulsion = 17805.012300 eV Total energy + Delta-G solvation = -3186.439181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41422 -39.12191 -36.74879 -35.04364 -33.42642 -32.43451 -31.53131 -30.69178 -27.52222 -26.19194 -24.50754 -23.08449 -22.05342 -20.25273 -19.36743 -19.10148 -17.25139 -17.11013 -16.17596 -15.70690 -15.65379 -15.22830 -14.94081 -14.44087 -14.07105 -13.97481 -13.49925 -13.29400 -12.81342 -12.70882 -12.48244 -11.86182 -11.67311 -11.45611 -11.36197 -11.23396 -11.03763 -11.00624 -10.91053 -10.82990 -10.36673 -10.20557 -9.78798 -9.66974 -9.12935 -9.11159 -8.89976 -8.54153 -7.86838 -6.16798 -4.26649 2.62284 3.21642 3.27704 3.28022 3.30575 3.33749 3.96786 4.31262 4.49105 4.57593 4.64544 4.78631 5.14347 5.19400 5.23198 5.34220 5.53875 5.55564 5.60760 5.63571 5.69540 5.80749 6.09673 6.23021 6.34542 6.40695 6.61353 6.75023 6.98728 7.14677 7.31473 7.33905 7.40976 7.56929 7.68254 7.85229 8.13855 8.18906 8.61744 8.72635 9.08247 9.41103 10.88304 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.003899 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.396041 B = 7179.608131 C = 7296.679564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.497 3.503 15 O -0.549 6.549 16 C -0.137 4.137 17 C -0.085 4.085 18 H 0.089 0.911 19 C -0.121 4.121 20 C -0.134 4.134 21 C 0.517 3.483 22 O -0.571 6.571 23 N -0.714 5.714 24 C 0.106 3.894 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.398 0.602 39 H 0.104 0.896 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 5.561 -11.439 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.282 3.718 15 O -0.429 6.429 16 C -0.178 4.178 17 C -0.104 4.104 18 H 0.107 0.893 19 C -0.159 4.159 20 C -0.174 4.174 21 C 0.305 3.695 22 O -0.451 6.451 23 N -0.365 5.365 24 C -0.018 4.018 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.233 0.767 39 H 0.122 0.878 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.749 5.619 -10.712 13.851 hybrid contribution 1.433 0.028 0.070 1.435 sum -5.317 5.646 -10.641 13.168 Atomic orbital electron populations 1.21830 0.98330 0.98000 1.01184 1.21934 0.92605 0.99882 1.02240 1.18767 0.94118 0.89164 0.81091 0.93321 1.21200 0.90790 1.39197 1.06302 0.92185 1.24883 0.98566 0.94773 0.95397 1.69881 1.35234 1.37471 1.09315 0.86530 0.84898 0.78313 0.77481 1.20200 1.21129 1.20169 1.46527 1.14689 1.55804 1.18509 1.20366 0.82761 0.79458 0.89171 1.90639 1.51333 1.60108 1.40836 1.21716 0.96832 1.01401 0.97840 1.21161 0.97053 0.97924 0.94289 0.89254 1.21768 0.94743 1.01636 0.97708 1.21616 0.98474 1.01296 0.95974 1.20200 0.82721 0.81413 0.85209 1.90736 1.27772 1.44684 1.81933 1.45517 1.20325 1.51775 1.18835 1.21734 0.83756 0.93626 1.02666 0.95962 0.93178 0.94263 0.88363 0.95114 0.92487 0.77983 0.89143 0.88861 0.91070 0.90302 0.88215 0.88316 0.76670 0.87774 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.22 16 4 H 0.05 1.34 7.58 -51.92 -0.39 0.95 16 5 C -0.54 -13.51 8.73 -34.44 -0.30 -13.81 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.98 11.29 55.43 0.63 -23.36 16 9 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.71 -13.04 5.02 -54.93 -0.28 -13.32 16 14 C 0.50 8.24 6.15 -10.99 -0.07 8.18 16 15 O -0.55 -10.88 11.15 5.55 0.06 -10.82 16 16 C -0.14 -1.50 5.18 -27.88 -0.14 -1.64 16 17 C -0.09 -0.91 1.90 -90.49 -0.17 -1.08 16 18 H 0.09 1.11 7.95 -51.93 -0.41 0.70 16 19 C -0.12 -0.99 5.32 -26.53 -0.14 -1.13 16 20 C -0.13 -1.27 6.03 -28.11 -0.17 -1.44 16 21 C 0.52 6.76 7.71 -11.87 -0.09 6.67 16 22 O -0.57 -9.67 17.78 5.56 0.10 -9.57 16 23 N -0.71 -8.53 5.45 -61.39 -0.33 -8.87 16 24 C 0.11 1.23 6.10 -4.49 -0.03 1.21 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 27 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 28 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 6.16 8.54 -40.82 -0.35 5.81 16 32 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 4.52 8.80 -40.82 -0.36 4.16 16 39 H 0.10 1.48 6.17 -51.93 -0.32 1.16 16 40 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -30.68 317.91 -7.43 -38.11 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.19 Total: 8.94 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.19 Total: -0.85 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.02 Total: -45.54 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.16 Total: -20.39 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.68 -7.43 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632382438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.274 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds