Wall clock time and date at job start Mon Mar 30 2020 01:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 3 2 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 3 2 8 8 N 1.31514 * 119.99726 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00037 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47160 * 59.99611 * 9 7 5 11 11 H 1.48499 * 109.47085 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47121 * 299.99671 * 9 7 5 13 13 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 14 14 C 1.34776 * 120.00216 * 84.99451 * 13 3 2 15 15 O 1.21283 * 119.99606 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00388 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47604 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.59663 * 304.68211 * 17 16 14 19 19 C 1.53336 * 109.60571 * 184.18550 * 17 16 14 20 20 C 1.53054 * 108.43729 * 172.72941 * 19 17 16 21 21 C 1.50173 * 109.89648 * 48.88934 * 20 19 17 22 22 O 1.21276 * 118.24803 * 162.39902 * 21 20 19 23 23 N 1.33355 * 123.50402 * 342.41230 * 21 20 19 24 24 C 1.45755 * 124.10697 * 2.25051 * 23 21 20 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 0.97005 * 120.00053 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99585 * 265.00132 * 13 3 2 32 32 H 1.08999 * 109.47402 * 300.00593 * 16 14 13 33 33 H 1.09001 * 109.46870 * 60.00274 * 16 14 13 34 34 H 1.08998 * 109.67539 * 292.45010 * 19 17 16 35 35 H 1.08999 * 109.67565 * 52.97808 * 19 17 16 36 36 H 1.09008 * 109.40052 * 288.75208 * 20 19 17 37 37 H 1.09005 * 109.33129 * 168.97819 * 20 19 17 38 38 H 0.96998 * 117.94483 * 182.22173 * 23 21 20 39 39 H 1.08999 * 109.29734 * 220.58451 * 24 23 21 40 40 H 1.09005 * 109.13301 * 101.10815 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3374 2.1731 9 14 6.0050 0.8802 1.3810 10 1 6.5004 2.2802 1.3807 11 1 6.3979 0.2168 2.6502 12 1 6.5967 0.1456 0.2341 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3394 2.6325 -0.4340 16 6 0.0360 3.3377 -2.6547 17 6 -1.3827 3.8946 -2.5209 18 1 -2.0628 3.0955 -2.2261 19 6 -1.8311 4.4879 -3.8618 20 6 -3.3091 4.8700 -3.7521 21 6 -3.5394 5.6668 -2.5001 22 8 -4.5583 6.3189 -2.4140 23 7 -2.6833 5.6957 -1.4781 24 6 -1.4023 5.0005 -1.4651 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2719 2.1232 -1.9978 32 1 0.7274 4.1530 -2.8678 33 1 0.0671 2.6130 -3.4683 34 1 -1.2389 5.3748 -4.0871 35 1 -1.7008 3.7487 -4.6522 36 1 -3.9159 3.9649 -3.7221 37 1 -3.5928 5.4673 -4.6187 38 1 -2.9283 6.2120 -0.6943 39 1 -1.2405 4.5617 -0.4805 40 1 -0.6062 5.7145 -1.6764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632382438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:13 Heat of formation + Delta-G solvation = -121.846800 kcal Electronic energy + Delta-G solvation = -20992.425564 eV Core-core repulsion = 17805.012300 eV Total energy + Delta-G solvation = -3187.413264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43227 -40.46740 -37.88306 -36.68474 -34.38652 -34.18225 -32.91177 -31.96433 -29.14910 -27.47583 -25.39671 -24.81868 -23.10568 -21.80275 -20.93736 -19.96448 -18.81983 -18.16609 -17.44418 -17.15115 -16.93937 -16.51099 -16.18732 -15.98233 -15.22863 -15.07616 -14.61451 -14.45675 -14.33467 -13.83438 -13.81868 -13.45374 -13.13320 -12.95812 -12.85391 -12.62442 -12.43789 -12.20054 -12.13671 -11.97003 -11.83353 -11.69780 -11.52191 -11.00757 -10.79356 -10.53480 -10.36821 -10.03964 -9.48384 -8.13005 -6.29849 1.46811 1.47649 1.55369 1.62352 2.03104 2.37526 2.39870 2.77922 3.16736 3.61911 3.77119 3.85551 3.90604 4.21747 4.44038 4.53376 4.54642 4.62244 4.62848 4.74070 4.79261 4.83829 4.91526 4.97945 5.04164 5.12534 5.24566 5.31850 5.43381 5.49025 5.61171 5.72421 5.77511 5.86102 6.00788 6.23178 6.37851 6.80412 7.14324 7.19003 7.38716 7.75497 8.91605 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.003899 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.396041 B = 7179.608131 C = 7296.679564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.709 5.709 14 C 0.491 3.509 15 O -0.586 6.586 16 C -0.121 4.121 17 C -0.083 4.083 18 H 0.070 0.930 19 C -0.108 4.108 20 C -0.130 4.130 21 C 0.510 3.490 22 O -0.618 6.618 23 N -0.712 5.712 24 C 0.107 3.893 25 H 0.040 0.960 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.263 0.737 31 H 0.404 0.596 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.397 0.603 39 H 0.072 0.928 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 5.795 -14.504 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.358 5.358 14 C 0.279 3.721 15 O -0.468 6.468 16 C -0.161 4.161 17 C -0.102 4.102 18 H 0.088 0.912 19 C -0.146 4.146 20 C -0.170 4.170 21 C 0.299 3.701 22 O -0.501 6.501 23 N -0.360 5.360 24 C -0.016 4.016 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.238 0.762 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.231 0.769 39 H 0.091 0.909 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.654 5.858 -13.819 16.038 hybrid contribution 1.051 -0.016 1.089 1.514 sum -4.603 5.841 -12.730 14.743 Atomic orbital electron populations 1.21661 0.96876 0.98883 1.00426 1.21781 0.93804 0.99470 1.01014 1.18270 0.93237 0.89039 0.81959 0.98471 1.21605 0.91826 1.38600 1.06482 0.90971 1.25741 1.02976 0.94562 0.95205 1.70047 1.36996 1.38532 1.09859 0.85496 0.79593 0.78410 0.77418 1.19656 1.21583 1.18950 1.46288 1.16050 1.56207 1.17236 1.21424 0.81411 0.78488 0.90813 1.90646 1.52195 1.61073 1.42854 1.21709 0.97149 1.02436 0.94835 1.21144 0.96684 0.96919 0.95502 0.91201 1.21733 0.93500 1.02829 0.96496 1.21678 0.99861 1.01158 0.94275 1.20954 0.81876 0.81033 0.86259 1.90712 1.29619 1.46848 1.82963 1.45593 1.20427 1.51252 1.18775 1.21711 0.83850 0.94355 1.01699 0.94144 0.95786 0.93076 0.91568 0.94161 0.92795 0.76166 0.86259 0.85576 0.89634 0.87333 0.87398 0.86710 0.76904 0.90919 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.51 71.98 0.61 -4.54 16 2 C -0.12 -5.71 5.45 30.59 0.17 -5.54 16 3 C 0.28 13.35 2.24 44.24 0.10 13.45 16 4 H 0.00 -0.15 7.58 -2.38 -0.02 -0.17 16 5 C -0.55 -27.51 8.73 25.60 0.22 -27.28 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.79 5.29 84.66 0.45 1.24 16 8 N -0.92 -51.30 11.29 21.45 0.24 -51.05 16 9 Si 0.97 40.77 29.54 68.60 2.03 42.80 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 13 N -0.71 -25.27 5.02 -446.09 -2.24 -27.51 16 14 C 0.49 15.59 6.15 87.66 0.54 16.13 16 15 O -0.59 -23.53 11.15 -3.04 -0.03 -23.57 16 16 C -0.12 -2.18 5.18 29.85 0.15 -2.03 16 17 C -0.08 -1.54 1.90 -10.71 -0.02 -1.56 16 18 H 0.07 1.61 7.95 -2.39 -0.02 1.59 16 19 C -0.11 -1.28 5.32 30.73 0.16 -1.12 16 20 C -0.13 -2.09 6.03 29.70 0.18 -1.91 16 21 C 0.51 12.85 7.71 87.71 0.68 13.52 16 22 O -0.62 -20.97 17.78 -3.02 -0.05 -21.02 16 23 N -0.71 -16.74 5.45 -467.32 -2.55 -19.29 16 24 C 0.11 2.39 6.10 86.49 0.53 2.91 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.02 1.11 7.85 -2.39 -0.02 1.09 16 27 H 0.05 2.02 5.64 -2.39 -0.01 2.00 16 28 H 0.07 3.56 5.95 -2.39 -0.01 3.54 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 31 H 0.40 11.79 8.54 -92.71 -0.79 11.00 16 32 H 0.12 1.57 8.12 -2.39 -0.02 1.55 16 33 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 0.85 8.13 -2.39 -0.02 0.83 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.40 9.26 8.80 -92.71 -0.82 8.44 16 39 H 0.07 2.12 6.17 -2.39 -0.01 2.10 16 40 H 0.08 1.46 8.10 -2.38 -0.02 1.44 16 Total: -1.00 -70.24 317.91 0.61 -69.63 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.55 Total: 26.74 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 3.77 Total: 3.27 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -4.54 Total: -97.85 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.09 Total: -44.59 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -70.24 0.61 -69.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632382438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.221 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds