Wall clock time and date at job start Mon Mar 30 2020 01:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46573 * 2 1 4 4 H 1.08993 * 109.47537 * 54.31925 * 3 2 1 5 5 C 1.50708 * 109.46782 * 174.31898 * 3 2 1 6 6 H 1.07996 * 120.00230 * 93.61177 * 5 3 2 7 7 C 1.37875 * 119.99428 * 273.60602 * 5 3 2 8 8 N 1.31524 * 119.99655 * 174.35029 * 7 5 3 9 9 Si 1.86805 * 120.00554 * 354.34971 * 7 5 3 10 10 H 1.48497 * 109.46889 * 275.37905 * 9 7 5 11 11 H 1.48499 * 109.46555 * 35.37818 * 9 7 5 12 12 H 1.48493 * 109.47215 * 155.37941 * 9 7 5 13 13 N 1.46497 * 109.47426 * 294.31391 * 3 2 1 14 14 C 1.34779 * 120.00174 * 85.00192 * 13 3 2 15 15 O 1.21283 * 119.99307 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00237 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.46753 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.60578 * 55.00102 * 17 16 14 19 19 C 1.53349 * 109.59869 * 175.32687 * 17 16 14 20 20 C 1.53015 * 108.45935 * 187.11236 * 19 17 16 21 21 C 1.50172 * 110.00659 * 311.36487 * 20 19 17 22 22 O 1.21282 * 118.24307 * 197.49478 * 21 20 19 23 23 N 1.33354 * 123.50816 * 17.47120 * 21 20 19 24 24 C 1.45752 * 124.10791 * 357.75145 * 23 21 20 25 25 H 1.08997 * 109.47369 * 299.99592 * 1 2 3 26 26 H 1.08991 * 109.47431 * 59.99974 * 1 2 3 27 27 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46928 * 240.00234 * 2 1 3 29 29 H 1.09001 * 109.47436 * 120.00016 * 2 1 3 30 30 H 0.97003 * 119.99506 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00386 * 265.00822 * 13 3 2 32 32 H 1.08999 * 109.47008 * 299.99712 * 16 14 13 33 33 H 1.08993 * 109.47061 * 60.00126 * 16 14 13 34 34 H 1.08999 * 109.67257 * 307.01619 * 19 17 16 35 35 H 1.08994 * 109.67731 * 67.55179 * 19 17 16 36 36 H 1.08999 * 109.43427 * 191.14320 * 20 19 17 37 37 H 1.09001 * 109.25029 * 71.47286 * 20 19 17 38 38 H 0.97000 * 117.94730 * 177.77960 * 23 21 20 39 39 H 1.08997 * 109.30355 * 258.78911 * 24 23 21 40 40 H 1.08998 * 109.29800 * 139.40866 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5959 1.9849 0.8347 5 6 3.5404 1.4449 0.1407 6 1 4.1653 1.4739 -0.7397 7 6 4.1153 1.4102 1.3933 8 7 5.4203 1.3001 1.5151 9 14 3.0410 1.5197 2.9176 10 1 2.7682 2.9456 3.2296 11 1 1.7585 0.8128 2.6709 12 1 3.7421 0.8876 4.0638 13 7 1.6665 2.0925 -1.2587 14 6 0.4505 2.6589 -1.3898 15 8 -0.3343 2.6308 -0.4656 16 6 0.0662 3.3270 -2.6847 17 6 -1.3540 3.8844 -2.5691 18 1 -1.4183 4.5452 -1.7047 19 6 -1.7053 4.6654 -3.8411 20 6 -3.0529 5.3581 -3.6278 21 6 -4.0529 4.3795 -3.0823 22 8 -5.2303 4.6606 -3.1566 23 7 -3.7155 3.2179 -2.5209 24 6 -2.3460 2.7317 -2.4085 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8248 1.2761 2.3965 31 1 2.2943 2.1152 -1.9977 32 1 0.7599 4.1415 -2.8932 33 1 0.1064 2.5991 -3.4950 34 1 -0.9345 5.4103 -4.0390 35 1 -1.7782 3.9791 -4.6848 36 1 -3.4129 5.7517 -4.5784 37 1 -2.9272 6.1790 -2.9218 38 1 -4.4260 2.6614 -2.1655 39 1 -2.1629 1.9881 -3.1841 40 1 -2.2068 2.2701 -1.4310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632382440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:20 Heat of formation + Delta-G solvation = -123.457078 kcal Electronic energy + Delta-G solvation = -21124.030759 eV Core-core repulsion = 17936.547668 eV Total energy + Delta-G solvation = -3187.483091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45090 -40.53624 -37.90701 -36.72261 -34.39585 -34.31235 -33.17355 -32.04381 -29.51167 -27.57779 -25.38520 -24.56789 -23.13103 -21.82922 -21.08529 -19.95872 -19.13576 -18.18992 -17.63917 -17.33692 -16.90437 -16.49643 -16.20322 -15.95596 -15.43020 -14.96071 -14.78266 -14.54802 -14.29924 -14.10695 -13.81155 -13.70587 -13.57983 -13.00193 -12.87731 -12.59532 -12.42396 -12.33033 -12.12414 -11.85674 -11.82626 -11.70483 -11.59679 -11.17896 -10.81680 -10.78231 -10.45495 -10.02067 -9.59049 -8.36569 -6.40694 1.29920 1.35231 1.44761 1.62430 1.96399 2.28650 2.38205 2.61605 3.04151 3.61786 3.76417 3.84141 3.89215 4.18794 4.37425 4.44287 4.47014 4.52542 4.57308 4.64206 4.74238 4.83286 4.85757 4.93737 4.99278 5.04098 5.15937 5.23508 5.32849 5.33283 5.42835 5.47706 5.61574 5.79178 5.85703 6.18641 6.37730 6.64826 7.05488 7.19732 7.25197 7.64337 8.78593 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.004337 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.284445 B = 6455.125789 C = 6669.267219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 C 0.245 3.755 4 H 0.025 0.975 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.934 5.934 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.250 1.250 12 H -0.283 1.283 13 N -0.706 5.706 14 C 0.494 3.506 15 O -0.583 6.583 16 C -0.123 4.123 17 C -0.085 4.085 18 H 0.068 0.932 19 C -0.109 4.109 20 C -0.131 4.131 21 C 0.510 3.490 22 O -0.618 6.618 23 N -0.711 5.711 24 C 0.108 3.892 25 H 0.031 0.969 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.268 0.732 31 H 0.405 0.595 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.398 0.602 39 H 0.081 0.919 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 3.929 -12.365 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.141 3.859 4 H 0.043 0.957 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.573 5.573 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.174 1.174 12 H -0.209 1.209 13 N -0.355 5.355 14 C 0.282 3.718 15 O -0.465 6.465 16 C -0.163 4.163 17 C -0.104 4.104 18 H 0.087 0.913 19 C -0.147 4.147 20 C -0.171 4.171 21 C 0.299 3.701 22 O -0.501 6.501 23 N -0.360 5.360 24 C -0.016 4.016 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.240 0.760 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.232 0.768 39 H 0.099 0.901 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.478 4.152 -11.705 17.605 hybrid contribution 0.115 -0.366 1.228 1.286 sum -12.363 3.786 -10.477 16.642 Atomic orbital electron populations 1.21771 0.95563 1.00132 1.01489 1.22029 0.95271 0.98248 1.00914 1.18753 0.92813 0.90058 0.84307 0.95693 1.21303 0.90691 1.50848 0.93599 0.92517 1.25542 0.95628 0.94034 1.01570 1.69993 1.11327 1.51060 1.24887 0.86152 0.80290 0.78946 0.79943 1.20256 1.17366 1.20889 1.46240 1.16008 1.56336 1.16882 1.21401 0.81285 0.78187 0.90883 1.90638 1.51384 1.61068 1.43376 1.21713 0.97164 1.02765 0.94643 1.21153 0.93006 0.96724 0.99537 0.91331 1.21725 0.95929 1.00305 0.96697 1.21659 0.94194 0.97240 1.03984 1.20896 0.89815 0.82751 0.76614 1.90717 1.21568 1.77147 1.60702 1.45563 1.10512 1.20754 1.59139 1.21725 0.79545 0.96890 1.03439 0.95020 0.92094 0.92948 0.91953 0.93936 0.92250 0.75952 0.86039 0.85801 0.87672 0.89509 0.86842 0.87631 0.76783 0.90115 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 8.53 71.98 0.61 -3.96 16 2 C -0.13 -4.96 5.26 30.60 0.16 -4.80 16 3 C 0.25 10.58 1.79 44.25 0.08 10.66 16 4 H 0.03 1.21 5.24 -2.39 -0.01 1.20 16 5 C -0.53 -27.06 9.06 25.60 0.23 -26.83 16 6 H 0.06 3.10 8.03 -2.91 -0.02 3.08 16 7 C 0.03 1.76 5.47 84.65 0.46 2.22 16 8 N -0.93 -54.66 13.96 21.45 0.30 -54.36 16 9 Si 0.92 43.39 26.27 68.60 1.80 45.19 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.25 -11.33 6.30 99.48 0.63 -10.71 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 N -0.71 -23.39 5.03 -446.10 -2.24 -25.63 16 14 C 0.49 14.22 6.19 87.66 0.54 14.76 16 15 O -0.58 -20.85 11.17 -3.04 -0.03 -20.88 16 16 C -0.12 -2.00 5.18 29.85 0.15 -1.85 16 17 C -0.08 -1.43 1.89 -10.70 -0.02 -1.45 16 18 H 0.07 1.48 7.94 -2.39 -0.02 1.46 16 19 C -0.11 -1.20 5.33 30.72 0.16 -1.04 16 20 C -0.13 -2.01 6.03 29.69 0.18 -1.83 16 21 C 0.51 12.11 7.72 87.71 0.68 12.79 16 22 O -0.62 -20.18 17.78 -3.03 -0.05 -20.23 16 23 N -0.71 -15.02 5.45 -467.32 -2.55 -17.56 16 24 C 0.11 2.05 6.11 86.49 0.53 2.58 16 25 H 0.03 1.20 7.89 -2.39 -0.02 1.18 16 26 H 0.06 1.96 5.63 -2.39 -0.01 1.94 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.04 1.81 7.00 -2.39 -0.02 1.79 16 30 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.41 11.53 8.57 -92.71 -0.79 10.73 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.12 1.33 8.11 -2.39 -0.02 1.31 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.76 8.13 -2.39 -0.02 0.74 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.40 8.23 8.80 -92.71 -0.82 7.41 16 39 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 40 H 0.08 1.93 6.19 -2.39 -0.01 1.91 16 Total: -1.00 -70.96 315.50 0.36 -70.60 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.63 Total: 21.63 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 3.77 Total: 1.24 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -4.49 Total: -97.55 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.09 Total: -41.12 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.80 Total: 45.19 kcal Total: -70.96 0.36 -70.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632382440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.859 kcal (2) G-P(sol) polarization free energy of solvation -70.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds