Wall clock time and date at job start Mon Mar 30 2020 01:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50699 * 120.00466 * 2 1 4 4 C 1.32995 * 119.99634 * 179.97438 * 2 1 3 5 5 C 1.47109 * 119.99929 * 0.02562 * 4 2 1 6 6 O 1.21612 * 120.00067 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99847 * 179.97438 * 5 4 2 8 8 C 1.46495 * 119.99666 * 179.97438 * 7 5 4 9 9 C 1.53010 * 109.46778 * 180.02562 * 8 7 5 10 10 H 1.08994 * 109.50862 * 60.00364 * 9 8 7 11 11 C 1.53293 * 109.55195 * 180.12878 * 9 8 7 12 12 N 1.47149 * 108.38274 * 172.25112 * 11 9 8 13 13 C 1.36939 * 120.98074 * 129.44232 * 12 11 9 14 14 H 1.08003 * 120.00181 * 206.24356 * 13 12 11 15 15 C 1.38814 * 120.00159 * 26.24755 * 13 12 11 16 16 N 1.31618 * 120.00105 * 16.90743 * 15 13 12 17 17 Si 1.86805 * 120.00034 * 196.91528 * 15 13 12 18 18 H 1.48497 * 109.47133 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47097 * 119.99783 * 17 15 13 20 20 H 1.48497 * 109.46746 * 239.99669 * 17 15 13 21 21 C 1.47146 * 118.03833 * 309.46176 * 12 11 9 22 22 C 1.53300 * 108.38359 * 50.53777 * 21 12 11 23 23 O 1.42955 * 109.51058 * 299.89691 * 9 8 7 24 24 H 1.08994 * 109.47244 * 240.00047 * 1 2 3 25 25 H 1.09006 * 109.46847 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47332 * 119.99828 * 1 2 3 27 27 H 1.09003 * 109.46804 * 270.00293 * 3 2 1 28 28 H 1.08995 * 109.46821 * 30.00040 * 3 2 1 29 29 H 1.09000 * 109.46875 * 150.00264 * 3 2 1 30 30 H 1.07996 * 120.00444 * 180.02562 * 4 2 1 31 31 H 0.97003 * 119.99763 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.47173 * 60.00091 * 8 7 5 33 33 H 1.08996 * 109.47146 * 299.99640 * 8 7 5 34 34 H 1.09009 * 109.67922 * 291.97561 * 11 9 8 35 35 H 1.09001 * 109.68268 * 52.52758 * 11 9 8 36 36 H 0.96995 * 120.00271 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.68476 * 290.81445 * 21 12 11 38 38 H 1.09000 * 109.71201 * 170.27848 * 21 12 11 39 39 H 1.08992 * 109.51261 * 187.77681 * 22 21 12 40 40 H 1.08993 * 109.55220 * 67.64629 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4363 -2.4258 0.0005 6 8 0.2202 -2.4257 0.0005 7 7 2.1101 -3.5930 0.0005 8 6 1.3775 -4.8616 0.0011 9 6 2.3718 -6.0247 0.0016 10 1 2.9987 -5.9672 0.8913 11 6 1.6071 -7.3533 -0.0011 12 7 2.5752 -8.4455 -0.1888 13 6 2.5882 -9.5278 0.6501 14 1 3.5003 -10.0878 0.7949 15 6 1.4292 -9.9052 1.3142 16 7 0.2609 -9.4576 0.9053 17 14 1.5274 -11.0483 2.7884 18 1 2.9458 -11.4068 3.0431 19 1 0.9668 -10.3659 3.9821 20 1 0.7478 -12.2814 2.5114 21 6 3.5291 -8.3401 -1.3042 22 6 4.2002 -6.9634 -1.2381 23 8 3.1925 -5.9517 -1.1666 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 2.4423 1.6197 -1.0277 28 1 1.6716 2.0647 0.5138 29 1 3.2130 1.1746 0.5138 30 1 3.2519 -1.1520 0.0009 31 1 3.0802 -3.5930 0.0009 32 1 0.7505 -4.9195 -0.8886 33 1 0.7513 -4.9191 0.8913 34 1 1.0895 -7.4808 0.9498 35 1 0.8842 -7.3592 -0.8168 36 1 -0.5489 -9.7210 1.3695 37 1 2.9998 -8.4454 -2.2512 38 1 4.2843 -9.1212 -1.2171 39 1 4.8066 -6.8108 -2.1307 40 1 4.8343 -6.9088 -0.3533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666678495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:54 Heat of formation + Delta-G solvation = -48.863630 kcal Electronic energy + Delta-G solvation = -20649.610837 eV Core-core repulsion = 17465.362360 eV Total energy + Delta-G solvation = -3184.248477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.67214 -38.45942 -35.72871 -34.62033 -34.21624 -31.39354 -30.97433 -28.39902 -27.83110 -27.12392 -25.22692 -23.29771 -21.90579 -20.86864 -19.74560 -18.65829 -16.96786 -16.83361 -15.98774 -15.49399 -15.17864 -14.81750 -14.38318 -14.23575 -14.06230 -13.82422 -13.74557 -13.24943 -12.98274 -12.80896 -12.51441 -12.46775 -12.02547 -11.83028 -11.66119 -11.48757 -11.11342 -10.86542 -10.72122 -10.41523 -10.25923 -10.02694 -9.66731 -9.45850 -9.26955 -9.06353 -8.66092 -8.56292 -6.77264 -5.85900 -3.29774 1.38087 3.32868 3.40812 3.43032 3.45297 3.49554 4.26934 4.42807 4.68858 4.73565 5.14344 5.19951 5.27155 5.33320 5.35551 5.53365 5.58463 5.62509 5.65132 5.83810 5.86105 5.92640 6.02740 6.06343 6.13093 6.25992 6.37589 6.41785 6.48575 6.51577 6.74724 6.78256 7.06082 7.47127 7.69682 7.80328 7.84109 8.31481 8.48608 9.09245 9.72290 10.29309 11.22154 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027770 B = 0.003945 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.057410 B = 7095.968882 C = 7711.738443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.125 4.125 4 C -0.231 4.231 5 C 0.539 3.461 6 O -0.548 6.548 7 N -0.717 5.717 8 C 0.133 3.867 9 C 0.055 3.945 10 H 0.055 0.945 11 C 0.152 3.848 12 N -0.595 5.595 13 C -0.256 4.256 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.905 3.095 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.109 3.891 22 C 0.050 3.950 23 O -0.390 6.390 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.401 0.599 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.031 0.969 36 H 0.255 0.745 37 H 0.027 0.973 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.101 16.930 -1.702 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.043 4.043 3 C -0.182 4.182 4 C -0.252 4.252 5 C 0.328 3.672 6 O -0.428 6.428 7 N -0.367 5.367 8 C 0.010 3.990 9 C -0.004 4.004 10 H 0.073 0.927 11 C 0.026 3.974 12 N -0.319 5.319 13 C -0.386 4.386 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.216 1.216 21 C -0.017 4.017 22 C -0.028 4.028 23 O -0.310 6.310 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.051 16.957 -1.770 17.782 hybrid contribution 0.629 -0.979 0.885 1.462 sum 5.680 15.979 -0.885 16.981 Atomic orbital electron populations 1.21032 0.90796 1.00749 1.04562 1.22543 0.96953 0.94373 0.90424 1.21001 1.00006 0.94405 1.02758 1.22418 0.99975 0.92165 1.10601 1.18548 0.87448 0.84347 0.76813 1.90770 1.13711 1.87777 1.50542 1.45876 1.10491 1.05690 1.74672 1.21381 0.94116 0.80625 1.02916 1.23148 0.92647 0.96906 0.87729 0.92690 1.21309 0.90470 0.82785 1.02848 1.44061 1.37694 1.19957 1.30173 1.19228 0.94282 1.06082 1.18970 0.91308 1.25067 0.94993 0.98927 1.00659 1.70027 0.96887 1.47648 1.39952 0.86191 0.77583 0.80170 0.82642 1.20230 1.21416 1.21603 1.21600 0.93590 0.94763 0.91785 1.23003 0.89796 0.89738 1.00273 1.87779 1.47402 1.52213 1.43561 0.89879 0.93236 0.89928 0.90467 0.91100 0.91236 0.85868 0.76471 0.90854 0.90122 0.88594 0.95070 0.93440 0.95558 0.91983 0.90038 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.33 36.01 0.30 -1.01 16 2 C -0.04 -0.43 6.11 -101.17 -0.62 -1.05 16 3 C -0.13 -0.88 9.98 36.01 0.36 -0.52 16 4 C -0.23 -2.69 9.63 -37.80 -0.36 -3.05 16 5 C 0.54 8.24 7.73 -12.66 -0.10 8.14 16 6 O -0.55 -9.99 13.07 5.27 0.07 -9.92 16 7 N -0.72 -10.75 5.45 -61.49 -0.33 -11.08 16 8 C 0.13 2.34 5.37 -4.04 -0.02 2.32 16 9 C 0.06 1.06 2.86 -26.57 -0.08 0.98 16 10 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 11 C 0.15 3.63 4.74 -3.54 -0.02 3.61 16 12 N -0.60 -14.92 3.05 -171.83 -0.52 -15.44 16 13 C -0.26 -6.96 9.65 -15.06 -0.15 -7.11 16 14 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 15 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 16 N -0.90 -25.94 11.14 55.49 0.62 -25.32 16 17 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.11 2.27 6.73 -3.53 -0.02 2.25 16 22 C 0.05 0.88 6.99 37.31 0.26 1.14 16 23 O -0.39 -7.33 10.14 -35.23 -0.36 -7.69 16 24 H 0.08 1.09 7.22 -51.93 -0.37 0.71 16 25 H 0.05 0.44 7.94 -51.93 -0.41 0.03 16 26 H 0.08 1.08 7.22 -51.93 -0.37 0.71 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.40 5.21 8.34 -40.82 -0.34 4.87 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.10 2.51 6.14 -51.92 -0.32 2.19 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 327.13 15.07 4.93 4.93 Total: -1.00 -31.34 327.13 -7.58 -38.93 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.42 Total: 3.53 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -0.53 Total: 5.68 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.24 Total: -51.85 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.29 Total: -17.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.34 -7.58 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666678495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.936 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds