Wall clock time and date at job start Mon Mar 30 2020 01:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50699 * 120.00466 * 2 1 4 4 C 1.32995 * 119.99634 * 179.97438 * 2 1 3 5 5 C 1.47109 * 119.99929 * 0.02562 * 4 2 1 6 6 O 1.21612 * 120.00067 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99847 * 179.97438 * 5 4 2 8 8 C 1.46495 * 119.99666 * 179.97438 * 7 5 4 9 9 C 1.53010 * 109.46778 * 180.02562 * 8 7 5 10 10 H 1.08994 * 109.50862 * 60.00364 * 9 8 7 11 11 C 1.53293 * 109.55195 * 180.12878 * 9 8 7 12 12 N 1.47149 * 108.38274 * 172.25112 * 11 9 8 13 13 C 1.36939 * 120.98074 * 129.44232 * 12 11 9 14 14 H 1.08003 * 120.00181 * 206.24356 * 13 12 11 15 15 C 1.38814 * 120.00159 * 26.24755 * 13 12 11 16 16 N 1.31618 * 120.00105 * 16.90743 * 15 13 12 17 17 Si 1.86805 * 120.00034 * 196.91528 * 15 13 12 18 18 H 1.48497 * 109.47133 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47097 * 119.99783 * 17 15 13 20 20 H 1.48497 * 109.46746 * 239.99669 * 17 15 13 21 21 C 1.47146 * 118.03833 * 309.46176 * 12 11 9 22 22 C 1.53300 * 108.38359 * 50.53777 * 21 12 11 23 23 O 1.42955 * 109.51058 * 299.89691 * 9 8 7 24 24 H 1.08994 * 109.47244 * 240.00047 * 1 2 3 25 25 H 1.09006 * 109.46847 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47332 * 119.99828 * 1 2 3 27 27 H 1.09003 * 109.46804 * 270.00293 * 3 2 1 28 28 H 1.08995 * 109.46821 * 30.00040 * 3 2 1 29 29 H 1.09000 * 109.46875 * 150.00264 * 3 2 1 30 30 H 1.07996 * 120.00444 * 180.02562 * 4 2 1 31 31 H 0.97003 * 119.99763 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.47173 * 60.00091 * 8 7 5 33 33 H 1.08996 * 109.47146 * 299.99640 * 8 7 5 34 34 H 1.09009 * 109.67922 * 291.97561 * 11 9 8 35 35 H 1.09001 * 109.68268 * 52.52758 * 11 9 8 36 36 H 0.96995 * 120.00271 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.68476 * 290.81445 * 21 12 11 38 38 H 1.09000 * 109.71201 * 170.27848 * 21 12 11 39 39 H 1.08992 * 109.51261 * 187.77681 * 22 21 12 40 40 H 1.08993 * 109.55220 * 67.64629 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4363 -2.4258 0.0005 6 8 0.2202 -2.4257 0.0005 7 7 2.1101 -3.5930 0.0005 8 6 1.3775 -4.8616 0.0011 9 6 2.3718 -6.0247 0.0016 10 1 2.9987 -5.9672 0.8913 11 6 1.6071 -7.3533 -0.0011 12 7 2.5752 -8.4455 -0.1888 13 6 2.5882 -9.5278 0.6501 14 1 3.5003 -10.0878 0.7949 15 6 1.4292 -9.9052 1.3142 16 7 0.2609 -9.4576 0.9053 17 14 1.5274 -11.0483 2.7884 18 1 2.9458 -11.4068 3.0431 19 1 0.9668 -10.3659 3.9821 20 1 0.7478 -12.2814 2.5114 21 6 3.5291 -8.3401 -1.3042 22 6 4.2002 -6.9634 -1.2381 23 8 3.1925 -5.9517 -1.1666 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 2.4423 1.6197 -1.0277 28 1 1.6716 2.0647 0.5138 29 1 3.2130 1.1746 0.5138 30 1 3.2519 -1.1520 0.0009 31 1 3.0802 -3.5930 0.0009 32 1 0.7505 -4.9195 -0.8886 33 1 0.7513 -4.9191 0.8913 34 1 1.0895 -7.4808 0.9498 35 1 0.8842 -7.3592 -0.8168 36 1 -0.5489 -9.7210 1.3695 37 1 2.9998 -8.4454 -2.2512 38 1 4.2843 -9.1212 -1.2171 39 1 4.8066 -6.8108 -2.1307 40 1 4.8343 -6.9088 -0.3533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666678495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:53 Heat of formation + Delta-G solvation = -70.490633 kcal Electronic energy + Delta-G solvation = -20650.548654 eV Core-core repulsion = 17465.362360 eV Total energy + Delta-G solvation = -3185.186294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93382 -40.01523 -36.78299 -36.29374 -35.60367 -33.27713 -32.58257 -29.56176 -28.75331 -28.57866 -26.82947 -25.07751 -23.45688 -22.10640 -21.43235 -19.72255 -18.89072 -17.95563 -17.51059 -17.03936 -16.73499 -16.13680 -16.01764 -15.56608 -15.34749 -15.15217 -14.94490 -14.70956 -14.51745 -14.38873 -13.68036 -13.31283 -13.22011 -13.11440 -13.02118 -12.71255 -12.64035 -12.51885 -12.38066 -12.18786 -12.07469 -11.88399 -11.32100 -10.85982 -10.62192 -10.55569 -10.30255 -9.80960 -8.77797 -7.92922 -5.40817 0.45156 1.44939 1.46771 1.57541 2.24492 2.34522 2.47613 2.78398 3.22258 3.48704 3.82452 3.96386 4.04211 4.05715 4.24190 4.33842 4.44471 4.50211 4.59027 4.60775 4.66477 4.72757 4.80497 4.85393 4.94068 4.96272 5.05371 5.08156 5.20452 5.20911 5.44522 5.50234 5.57297 5.58666 5.66611 6.24686 6.30990 6.65695 7.03373 7.31613 7.72372 8.26172 9.13125 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027770 B = 0.003945 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.057410 B = 7095.968882 C = 7711.738443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.122 4.122 4 C -0.246 4.246 5 C 0.531 3.469 6 O -0.587 6.587 7 N -0.709 5.709 8 C 0.145 3.855 9 C 0.078 3.922 10 H 0.064 0.936 11 C 0.159 3.841 12 N -0.615 5.615 13 C -0.266 4.266 14 H 0.075 0.925 15 C -0.052 4.052 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.263 1.263 19 H -0.289 1.289 20 H -0.293 1.293 21 C 0.101 3.899 22 C 0.056 3.944 23 O -0.390 6.390 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.414 0.586 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.066 0.934 35 H -0.002 1.002 36 H 0.251 0.749 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.690 18.726 -1.474 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.031 4.031 3 C -0.178 4.178 4 C -0.266 4.266 5 C 0.323 3.677 6 O -0.470 6.470 7 N -0.360 5.360 8 C 0.020 3.980 9 C 0.018 3.982 10 H 0.082 0.918 11 C 0.033 3.967 12 N -0.340 5.340 13 C -0.395 4.395 14 H 0.093 0.907 15 C -0.248 4.248 16 N -0.582 5.582 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.220 1.220 21 C -0.024 4.024 22 C -0.021 4.021 23 O -0.309 6.309 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.172 0.828 31 H 0.250 0.750 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.017 0.983 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.703 18.768 -1.559 20.348 hybrid contribution -0.197 -1.525 0.731 1.703 sum 7.506 17.243 -0.828 18.824 Atomic orbital electron populations 1.20997 0.92080 1.01821 1.02464 1.22909 0.96413 0.95863 0.87909 1.21076 1.00322 0.92324 1.04064 1.22458 1.01236 0.90290 1.12634 1.19269 0.87251 0.85441 0.75747 1.90760 1.15572 1.88334 1.52320 1.45722 1.10984 1.04652 1.74665 1.21027 0.93629 0.81696 1.01643 1.22741 0.92361 0.94668 0.88434 0.91780 1.21082 0.90449 0.85259 0.99939 1.44371 1.38334 1.19907 1.31361 1.19599 0.94426 1.06414 1.19104 0.90715 1.25876 0.94676 1.00910 1.03298 1.70193 0.97413 1.49377 1.41219 0.85147 0.78030 0.77844 0.79058 1.18676 1.21585 1.22009 1.21835 0.93058 0.97682 0.89824 1.23095 0.89253 0.86938 1.02809 1.87794 1.47567 1.52443 1.43133 0.92049 0.90467 0.92169 0.88958 0.89773 0.89718 0.82805 0.74969 0.92745 0.91037 0.91518 0.98345 0.93956 0.96733 0.90814 0.86017 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.33 71.24 0.59 -2.01 16 2 C -0.03 -0.54 6.11 -17.61 -0.11 -0.65 16 3 C -0.12 -1.24 9.98 71.24 0.71 -0.53 16 4 C -0.25 -5.23 9.63 23.43 0.23 -5.01 16 5 C 0.53 16.11 7.73 86.57 0.67 16.77 16 6 O -0.59 -22.12 13.07 -4.07 -0.05 -22.17 16 7 N -0.71 -20.81 5.45 -466.70 -2.54 -23.35 16 8 C 0.15 5.21 5.37 86.38 0.46 5.68 16 9 C 0.08 2.97 2.86 30.70 0.09 3.06 16 10 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 11 C 0.16 7.86 4.74 86.35 0.41 8.27 16 12 N -0.62 -31.14 3.05 -697.54 -2.13 -33.26 16 13 C -0.27 -14.50 9.65 84.03 0.81 -13.69 16 14 H 0.08 3.91 7.88 -2.91 -0.02 3.88 16 15 C -0.05 -2.91 4.95 84.86 0.42 -2.49 16 16 N -0.94 -55.84 11.14 21.65 0.24 -55.60 16 17 Si 0.97 44.53 29.59 68.60 2.03 46.56 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 C 0.10 4.13 6.73 86.36 0.58 4.71 16 22 C 0.06 1.82 6.99 72.08 0.50 2.32 16 23 O -0.39 -14.01 10.14 -148.98 -1.51 -15.52 16 24 H 0.06 1.64 7.22 -2.39 -0.02 1.62 16 25 H 0.08 1.23 7.94 -2.38 -0.02 1.21 16 26 H 0.06 1.62 7.22 -2.39 -0.02 1.60 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.68 8.05 -2.39 -0.02 0.66 16 29 H 0.08 0.67 8.07 -2.39 -0.02 0.65 16 30 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.41 9.94 8.34 -92.71 -0.77 9.17 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 3.66 6.14 -2.38 -0.01 3.65 16 35 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 39 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -70.21 327.13 1.66 -68.55 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.25 Total: 18.35 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 5.37 Total: 16.44 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.43 Total: -112.22 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.56 Total: -37.69 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.21 1.66 -68.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666678495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.943 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds