Wall clock time and date at job start Mon Mar 30 2020 01:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00087 * 2 1 4 4 C 1.53004 * 109.46714 * 125.00221 * 3 2 1 5 5 O 1.42902 * 109.46642 * 180.02562 * 4 3 2 6 6 C 1.42905 * 113.99862 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47129 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99902 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00207 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00008 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46948 * 174.94227 * 10 9 7 12 12 N 1.46505 * 115.55024 * 80.38544 * 11 10 9 13 13 C 1.36942 * 119.99583 * 65.27855 * 12 11 10 14 14 H 1.08007 * 119.99964 * 354.96284 * 13 12 11 15 15 C 1.38809 * 119.99798 * 174.68484 * 13 12 11 16 16 N 1.31619 * 120.00146 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99839 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47255 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47189 * 120.00123 * 17 15 13 20 20 H 1.48504 * 109.47055 * 240.00189 * 17 15 13 21 21 C 1.52999 * 117.50098 * 226.06177 * 11 10 9 22 22 C 1.53002 * 117.49982 * 294.71995 * 11 10 9 23 23 H 1.08004 * 120.00093 * 180.02562 * 1 2 3 24 24 H 1.08004 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99910 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47120 * 5.00068 * 3 2 1 27 27 H 1.09002 * 109.47081 * 244.99942 * 3 2 1 28 28 H 1.08994 * 109.47452 * 60.00050 * 4 3 2 29 29 H 1.09002 * 109.47118 * 299.99698 * 4 3 2 30 30 H 1.09002 * 109.46899 * 60.00198 * 6 5 4 31 31 H 1.09002 * 109.47026 * 300.00105 * 6 5 4 32 32 H 0.97001 * 119.99786 * 359.97438 * 9 7 6 33 33 H 1.08994 * 109.47255 * 54.94194 * 10 9 7 34 34 H 1.08999 * 109.46673 * 294.93754 * 10 9 7 35 35 H 0.96998 * 120.00497 * 245.27841 * 12 11 10 36 36 H 0.97000 * 119.99696 * 180.02562 * 16 15 13 37 37 H 1.08998 * 117.49974 * 215.00780 * 21 11 10 38 38 H 1.09000 * 117.49520 * 0.02562 * 21 11 10 39 39 H 1.09000 * 117.49687 * 359.97438 * 22 11 10 40 40 H 1.08995 * 117.49858 * 144.97063 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 8 3.7491 2.5708 1.1820 6 6 4.6878 2.6999 2.2517 7 6 5.3799 4.0350 2.1543 8 8 5.0968 4.8008 1.2573 9 7 6.3134 4.3782 3.0638 10 6 6.9858 5.6763 2.9693 11 6 7.8982 5.8676 4.1826 12 7 9.1964 5.1927 4.1096 13 6 10.1142 5.5738 3.1674 14 1 9.8519 6.3149 2.4267 15 6 11.3835 5.0121 3.1678 16 7 11.7048 4.1127 4.0735 17 14 12.6357 5.5325 1.8831 18 1 12.0308 6.5495 0.9858 19 1 13.8253 6.1115 2.5574 20 1 13.0461 4.3498 1.0843 21 6 7.8427 7.2164 4.9026 22 6 7.2335 5.9738 5.5566 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 3.7399 0.5065 1.0921 29 1 2.4773 1.2355 2.1130 30 1 5.4274 1.9020 2.1845 31 1 4.1640 2.6305 3.2051 32 1 6.5396 3.7659 3.7813 33 1 6.2401 6.4710 2.9466 34 1 7.5819 5.7112 2.0574 35 1 9.4059 4.4758 4.7285 36 1 12.5920 3.7204 4.0740 37 1 8.7721 7.6018 5.3219 38 1 7.1558 7.9674 4.5122 39 1 6.1462 5.9078 5.5961 40 1 7.7619 5.5411 6.4060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670906691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:38 Heat of formation + Delta-G solvation = -51.102131 kcal Electronic energy + Delta-G solvation = -19764.964102 eV Core-core repulsion = 16580.618556 eV Total energy + Delta-G solvation = -3184.345545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86172 -39.24150 -38.54085 -35.87449 -35.31776 -34.81285 -31.65716 -30.99098 -29.28972 -26.76441 -25.91994 -23.92132 -23.26855 -21.55345 -20.81259 -20.56003 -19.15941 -18.24484 -17.82939 -17.51717 -16.99618 -16.41747 -16.28157 -16.03593 -15.56200 -15.43765 -15.05252 -14.80335 -14.37285 -14.08135 -13.72620 -13.57203 -13.30247 -12.96395 -12.84900 -12.51651 -12.28027 -12.18342 -12.13451 -11.99904 -11.97108 -11.59773 -11.04789 -10.97614 -10.68913 -10.56521 -10.25903 -10.04246 -9.03844 -7.97437 -5.25879 1.34225 1.44779 1.46635 1.55453 1.59917 1.87417 2.51772 2.91881 3.17942 3.36990 3.66002 3.78328 3.85656 4.01361 4.16125 4.18675 4.20374 4.27986 4.31639 4.33470 4.47142 4.50211 4.76063 4.83310 4.90847 4.94183 5.03647 5.04481 5.10972 5.18706 5.38372 5.46587 5.54953 5.73701 5.86165 6.09795 6.26245 6.61272 7.25564 7.32561 8.05444 8.29343 9.25052 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.003328 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.243952 B = 8411.947788 C = 9122.842726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C -0.094 4.094 4 C 0.061 3.939 5 O -0.399 6.399 6 C 0.051 3.949 7 C 0.504 3.496 8 O -0.582 6.582 9 N -0.701 5.701 10 C 0.160 3.840 11 C 0.100 3.900 12 N -0.698 5.698 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.068 4.068 16 N -0.964 5.964 17 Si 0.963 3.037 18 H -0.272 1.272 19 H -0.292 1.292 20 H -0.295 1.295 21 C -0.186 4.186 22 C -0.150 4.150 23 H 0.114 0.886 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.413 0.587 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.379 0.621 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.071 -7.272 -0.017 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C -0.131 4.131 4 C -0.015 4.015 5 O -0.318 6.318 6 C -0.028 4.028 7 C 0.291 3.709 8 O -0.462 6.462 9 N -0.353 5.353 10 C 0.034 3.966 11 C 0.008 3.992 12 N -0.337 5.337 13 C -0.360 4.360 14 H 0.086 0.914 15 C -0.261 4.261 16 N -0.614 5.614 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.219 1.219 20 H -0.222 1.222 21 C -0.227 4.227 22 C -0.187 4.187 23 H 0.132 0.868 24 H 0.115 0.885 25 H 0.141 0.859 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.249 0.751 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.212 0.788 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.196 -6.498 -0.937 21.236 hybrid contribution 1.504 -0.344 -0.066 1.544 sum -18.692 -6.842 -1.003 19.930 Atomic orbital electron populations 1.24083 0.95805 1.02788 0.99638 1.22820 0.96236 0.97611 1.01191 1.20638 0.97774 0.96593 0.98132 1.22680 0.94239 0.85201 0.99350 1.87953 1.55058 1.39282 1.49555 1.22265 0.93597 0.93994 0.92955 1.20972 0.79662 0.89086 0.81153 1.90681 1.65582 1.54355 1.35552 1.45717 1.39190 1.19868 1.30560 1.20958 0.93387 0.84804 0.97409 1.20330 0.87802 0.98831 0.92261 1.41822 1.11596 1.40948 1.39328 1.19435 0.92130 1.17936 1.06537 0.91399 1.25416 0.99296 1.00346 1.01045 1.69782 1.20811 1.32808 1.38015 0.85226 0.79407 0.77286 0.78796 1.19670 1.21919 1.22189 1.23382 1.02382 0.92029 1.04881 1.23156 1.00545 1.00924 0.94088 0.86788 0.88491 0.85923 0.91376 0.91055 0.91616 0.91380 0.88119 0.86739 0.75077 0.91001 0.94440 0.78781 0.94004 0.90364 0.87644 0.86241 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 14.32 67.78 0.97 -1.24 16 2 C -0.16 -2.15 9.52 25.65 0.24 -1.90 16 3 C -0.09 -1.64 6.03 29.85 0.18 -1.46 16 4 C 0.06 1.09 5.92 71.98 0.43 1.52 16 5 O -0.40 -10.60 9.88 -129.94 -1.28 -11.88 16 6 C 0.05 1.14 6.42 71.24 0.46 1.60 16 7 C 0.50 16.11 7.91 87.66 0.69 16.81 16 8 O -0.58 -24.48 16.49 15.99 0.26 -24.22 16 9 N -0.70 -21.14 5.51 -463.06 -2.55 -23.70 16 10 C 0.16 5.73 5.73 86.38 0.49 6.23 16 11 C 0.10 3.64 2.15 3.60 0.01 3.65 16 12 N -0.70 -32.84 5.49 -303.32 -1.67 -34.51 16 13 C -0.23 -12.32 9.56 84.03 0.80 -11.52 16 14 H 0.07 3.67 7.77 -2.91 -0.02 3.64 16 15 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 16 N -0.96 -56.94 13.06 21.65 0.28 -56.66 16 17 Si 0.96 46.13 29.55 68.60 2.03 48.16 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 21 C -0.19 -6.04 10.11 30.62 0.31 -5.73 16 22 C -0.15 -4.19 10.14 30.62 0.31 -3.88 16 23 H 0.11 0.99 8.06 -2.91 -0.02 0.97 16 24 H 0.10 1.15 7.84 -2.91 -0.02 1.13 16 25 H 0.12 1.32 8.06 -2.91 -0.02 1.30 16 26 H 0.07 1.27 7.79 -2.39 -0.02 1.25 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.41 10.45 8.48 -92.71 -0.79 9.67 16 33 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 34 H 0.04 1.62 7.73 -2.39 -0.02 1.60 16 35 H 0.38 18.90 8.04 -92.71 -0.75 18.16 16 36 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.11 2.94 8.08 -2.39 -0.02 2.92 16 39 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -71.01 347.83 1.93 -69.08 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.50 Total: 33.05 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.36 Total: 0.67 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.94 Total: -114.86 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -1.02 Total: -36.10 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -71.01 1.93 -69.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670906691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.974 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds