Wall clock time and date at job start Mon Mar 30 2020 01:09:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.50700 * 120.00445 * 2 1
4 4 C 1.52997 * 109.47313 * 239.99924 * 3 2 1
5 5 O 1.42900 * 109.46601 * 0.02562 * 3 2 1
6 6 C 1.52997 * 109.46863 * 119.99850 * 3 2 1
7 7 C 1.50700 * 109.46991 * 180.02562 * 6 3 2
8 8 O 1.21283 * 119.99918 * 359.97438 * 7 6 3
9 9 N 1.34776 * 119.99890 * 180.02562 * 7 6 3
10 10 C 1.46498 * 120.00485 * 359.97438 * 9 7 6
11 11 C 1.46508 * 119.99979 * 179.97438 * 9 7 6
12 12 C 1.53496 * 114.20706 * 239.99886 * 11 9 7
13 13 N 1.47062 * 87.98485 * 220.14769 * 12 11 9
14 14 C 1.36939 * 136.05593 * 207.08750 * 13 12 11
15 15 H 1.08008 * 119.99868 * 7.82597 * 14 13 12
16 16 C 1.38808 * 120.00203 * 187.82575 * 14 13 12
17 17 N 1.31618 * 119.99998 * 195.17052 * 16 14 13
18 18 Si 1.86797 * 119.99840 * 15.16580 * 16 14 13
19 19 H 1.48503 * 109.47450 * 270.00422 * 18 16 14
20 20 H 1.48503 * 109.47360 * 30.00092 * 18 16 14
21 21 H 1.48498 * 109.47360 * 150.00270 * 18 16 14
22 22 C 1.47059 * 87.88616 * 27.34176 * 13 12 11
23 23 H 1.08005 * 119.99881 * 0.02562 * 1 2 3
24 24 H 1.08001 * 120.00371 * 179.97438 * 1 2 3
25 25 H 1.08001 * 119.99314 * 180.02562 * 2 1 3
26 26 H 1.08992 * 109.47088 * 299.99907 * 4 3 2
27 27 H 1.09004 * 109.46692 * 59.99859 * 4 3 2
28 28 H 1.08999 * 109.47170 * 179.97438 * 4 3 2
29 29 H 0.96702 * 114.00203 * 59.99927 * 5 3 2
30 30 H 1.09000 * 109.47565 * 60.00075 * 6 3 2
31 31 H 1.09000 * 109.47270 * 300.00350 * 6 3 2
32 32 H 1.08994 * 109.47345 * 270.00261 * 10 9 7
33 33 H 1.09001 * 109.46733 * 30.00327 * 10 9 7
34 34 H 1.08996 * 109.47534 * 149.99922 * 10 9 7
35 35 H 1.09001 * 113.27729 * 13.06740 * 11 9 7
36 36 H 1.09008 * 113.46447 * 105.36204 * 12 11 9
37 37 H 1.08996 * 113.51824 * 334.94014 * 12 11 9
38 38 H 0.96995 * 120.00365 * 354.90363 * 17 16 14
39 39 H 1.08997 * 113.47135 * 87.43718 * 22 13 12
40 40 H 1.09007 * 113.47198 * 217.88025 * 22 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 6 2.9432 1.3861 -1.2492
5 8 1.1350 2.3912 0.0006
6 6 2.9431 1.3860 1.2493
7 6 3.6963 2.6913 1.2496
8 8 3.5448 3.4790 0.3399
9 7 4.5389 2.9828 2.2603
10 6 4.7224 2.0311 3.3588
11 6 5.2715 4.2515 2.2603
12 6 6.7987 4.0965 2.2599
13 7 6.8609 5.2192 3.2077
14 6 7.7743 6.1868 3.5314
15 1 8.6687 6.3054 2.9378
16 6 7.5506 7.0152 4.6225
17 7 8.2515 8.1202 4.7645
18 14 6.2547 6.5619 5.8892
19 1 4.9486 7.1466 5.4923
20 1 6.1326 5.0839 5.9654
21 1 6.6525 7.0949 7.2170
22 6 5.5133 4.8416 3.6594
23 1 -0.5400 0.9354 -0.0004
24 1 -0.5401 -0.9353 -0.0004
25 1 1.8499 -0.9354 -0.0004
26 1 3.6514 0.5576 -1.2492
27 1 2.3165 1.3283 -2.1392
28 1 3.4879 2.3302 -1.2494
29 1 0.5439 2.4029 0.7659
30 1 3.6514 0.5575 1.2493
31 1 2.3165 1.3282 2.1392
32 1 3.9973 2.2399 4.1453
33 1 4.5750 1.0164 2.9888
34 1 5.7313 2.1287 3.7595
35 1 4.8946 4.9666 1.5291
36 1 7.2570 4.3164 1.2956
37 1 7.1400 3.1518 2.6829
38 1 8.9740 8.3188 4.1485
39 1 5.5149 4.0931 4.4517
40 1 4.8765 5.6964 3.8876
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699709801.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:09:03
Heat of formation + Delta-G solvation = 9.632092 kcal
Electronic energy + Delta-G solvation = -21134.377222 eV
Core-core repulsion = 17952.665310 eV
Total energy + Delta-G solvation = -3181.711912 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.38420 -38.87068 -37.44302 -34.67328 -33.17960 -32.31905 -31.37696 -28.68825
-27.56770 -26.67269 -25.31138 -23.48114 -22.16192 -19.93366 -19.78207 -18.80014
-17.56338 -17.26430 -16.87546 -16.04753 -15.77454 -15.47180 -15.00150 -14.62005
-13.89294 -13.63272 -13.41753 -13.25253 -12.93045 -12.44439 -12.38647 -12.35033
-12.06624 -11.88298 -11.86286 -11.64853 -11.49634 -11.23358 -11.19091 -10.63991
-10.32175 -10.20911 -9.72295 -9.70206 -9.38120 -9.25712 -8.74068 -8.28206
-7.22294 -6.34086 -3.26500 1.90568 2.76441 3.10323 3.39155 3.44382
3.59689 4.08396 4.37801 4.54557 4.56753 4.76059 4.80484 4.92676
4.94696 5.07833 5.12873 5.30561 5.36147 5.44106 5.52419 5.55177
5.64241 5.75026 5.81383 5.87846 5.94681 6.14035 6.19833 6.28042
6.30665 6.37092 6.43451 6.54677 6.98578 7.06804 7.56004 7.59323
8.21316 8.37572 8.94273 9.46904 10.32075 11.16122
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.039738 B = 0.004203 C = 0.004088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 704.448187 B = 6659.572021 C = 6847.650138
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.185 4.185
3 C 0.176 3.824
4 C -0.148 4.148
5 O -0.537 6.537
6 C -0.164 4.164
7 C 0.512 3.488
8 O -0.519 6.519
9 N -0.604 5.604
10 C 0.074 3.926
11 C 0.103 3.897
12 C 0.107 3.893
13 N -0.617 5.617
14 C -0.306 4.306
15 H 0.084 0.916
16 C -0.022 4.022
17 N -0.929 5.929
18 Si 1.063 2.937
19 H -0.292 1.292
20 H -0.283 1.283
21 H -0.294 1.294
22 C 0.093 3.907
23 H 0.105 0.895
24 H 0.099 0.901
25 H 0.115 0.885
26 H 0.061 0.939
27 H 0.058 0.942
28 H 0.096 0.904
29 H 0.368 0.632
30 H 0.100 0.900
31 H 0.093 0.907
32 H 0.056 0.944
33 H 0.067 0.933
34 H 0.078 0.922
35 H 0.125 0.875
36 H 0.048 0.952
37 H 0.036 0.964
38 H 0.262 0.738
39 H 0.049 0.951
40 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.034 -19.928 -5.682 25.027
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.204 4.204
3 C 0.135 3.865
4 C -0.204 4.204
5 O -0.342 6.342
6 C -0.204 4.204
7 C 0.300 3.700
8 O -0.394 6.394
9 N -0.338 5.338
10 C -0.069 4.069
11 C -0.001 4.001
12 C -0.021 4.021
13 N -0.345 5.345
14 C -0.432 4.432
15 H 0.101 0.899
16 C -0.222 4.222
17 N -0.571 5.571
18 Si 0.894 3.106
19 H -0.220 1.220
20 H -0.209 1.209
21 H -0.222 1.222
22 C -0.034 4.034
23 H 0.123 0.877
24 H 0.117 0.883
25 H 0.133 0.867
26 H 0.080 0.920
27 H 0.077 0.923
28 H 0.114 0.886
29 H 0.214 0.786
30 H 0.118 0.882
31 H 0.112 0.888
32 H 0.075 0.925
33 H 0.086 0.914
34 H 0.097 0.903
35 H 0.142 0.858
36 H 0.067 0.933
37 H 0.054 0.946
38 H 0.073 0.927
39 H 0.066 0.934
40 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -14.340 -18.623 -5.293 24.093
hybrid contribution 0.648 -1.019 -0.531 1.319
sum -13.692 -19.642 -5.824 24.641
Atomic orbital electron populations
1.23868 0.96055 1.02361 0.99676 1.23636 0.96753 0.98841 1.01144
1.19869 0.88025 0.83949 0.94698 1.21940 0.98834 1.04470 0.95197
1.86743 1.50041 1.48886 1.48493 1.22428 1.00305 0.97267 1.00415
1.20392 0.79365 0.88340 0.81939 1.90676 1.63986 1.49943 1.34843
1.47948 1.43533 1.19531 1.22771 1.21814 1.03115 0.92049 0.89942
1.23515 0.91963 0.84749 0.99906 1.22781 0.92934 0.91571 0.94781
1.45883 1.14835 1.30028 1.43744 1.20111 1.02553 1.08246 1.12262
0.89880 1.25798 1.03891 0.94177 0.98307 1.70892 1.22441 1.21455
1.42314 0.83762 0.75060 0.75255 0.76475 1.22011 1.20941 1.22158
1.23101 0.88420 0.97484 0.94366 0.87686 0.88307 0.86710 0.91960
0.92309 0.88555 0.78560 0.88156 0.88840 0.92548 0.91388 0.90349
0.85760 0.93322 0.94617 0.92737 0.93382 0.92683
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.33 13.93 29.02 0.40 -0.93 16
2 C -0.19 -1.47 8.77 -36.03 -0.32 -1.79 16
3 C 0.18 1.81 0.94 -91.77 -0.09 1.73 16
4 C -0.15 -1.70 8.50 37.16 0.32 -1.38 16
5 O -0.54 -6.46 10.84 -53.50 -0.58 -7.04 16
6 C -0.16 -1.57 3.48 -27.88 -0.10 -1.66 16
7 C 0.51 7.27 7.23 -10.99 -0.08 7.19 16
8 O -0.52 -9.35 12.47 -12.71 -0.16 -9.51 16
9 N -0.60 -8.76 3.12 -173.56 -0.54 -9.30 16
10 C 0.07 0.80 8.92 59.85 0.53 1.34 16
11 C 0.10 1.90 4.57 -67.68 -0.31 1.59 16
12 C 0.11 2.15 8.24 -8.52 -0.07 2.08 16
13 N -0.62 -15.31 3.62 -184.65 -0.67 -15.98 16
14 C -0.31 -8.87 11.03 -15.06 -0.17 -9.04 16
15 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16
16 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16
17 N -0.93 -29.45 13.70 55.49 0.76 -28.69 16
18 Si 1.06 26.50 25.50 -169.99 -4.34 22.17 16
19 H -0.29 -7.06 6.97 56.52 0.39 -6.67 16
20 H -0.28 -6.42 5.66 56.52 0.32 -6.10 16
21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16
22 C 0.09 1.96 5.03 -8.39 -0.04 1.91 16
23 H 0.11 0.77 6.41 -52.48 -0.34 0.43 16
24 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16
25 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16
26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
28 H 0.10 1.41 5.51 -51.93 -0.29 1.13 16
29 H 0.37 3.14 8.05 45.56 0.37 3.51 16
30 H 0.10 0.75 7.40 -51.93 -0.38 0.37 16
31 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16
32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16
34 H 0.08 0.93 6.18 -51.93 -0.32 0.61 16
35 H 0.12 2.53 7.29 -51.93 -0.38 2.15 16
36 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16
37 H 0.04 0.67 6.97 -51.93 -0.36 0.31 16
38 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16
39 H 0.05 0.95 5.45 -51.93 -0.28 0.67 16
40 H 0.06 1.22 6.22 -51.93 -0.32 0.90 16
LS Contribution 314.65 15.07 4.74 4.74
Total: -1.00 -34.94 314.65 -6.05 -41.00
By element:
Atomic # 1 Polarization: 7.60 SS G_CDS: -5.26 Total: 2.34 kcal
Atomic # 6 Polarization: 0.29 SS G_CDS: -0.01 Total: 0.28 kcal
Atomic # 7 Polarization: -53.53 SS G_CDS: -0.45 Total: -53.97 kcal
Atomic # 8 Polarization: -15.81 SS G_CDS: -0.74 Total: -16.55 kcal
Atomic # 14 Polarization: 26.50 SS G_CDS: -4.34 Total: 22.17 kcal
Total LS contribution 4.74 Total: 4.74 kcal
Total: -34.94 -6.05 -41.00 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699709801.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.629 kcal
(2) G-P(sol) polarization free energy of solvation -34.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.687 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.632 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds