Wall clock time and date at job start Mon Mar 30 2020 01:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00445 * 2 1 4 4 C 1.52997 * 109.47313 * 239.99924 * 3 2 1 5 5 O 1.42900 * 109.46601 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.46863 * 119.99850 * 3 2 1 7 7 C 1.50700 * 109.46991 * 180.02562 * 6 3 2 8 8 O 1.21283 * 119.99918 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99890 * 180.02562 * 7 6 3 10 10 C 1.46498 * 120.00485 * 359.97438 * 9 7 6 11 11 C 1.46508 * 119.99979 * 179.97438 * 9 7 6 12 12 C 1.53496 * 114.20706 * 239.99886 * 11 9 7 13 13 N 1.47062 * 87.98485 * 220.14769 * 12 11 9 14 14 C 1.36939 * 136.05593 * 207.08750 * 13 12 11 15 15 H 1.08008 * 119.99868 * 7.82597 * 14 13 12 16 16 C 1.38808 * 120.00203 * 187.82575 * 14 13 12 17 17 N 1.31618 * 119.99998 * 195.17052 * 16 14 13 18 18 Si 1.86797 * 119.99840 * 15.16580 * 16 14 13 19 19 H 1.48503 * 109.47450 * 270.00422 * 18 16 14 20 20 H 1.48503 * 109.47360 * 30.00092 * 18 16 14 21 21 H 1.48498 * 109.47360 * 150.00270 * 18 16 14 22 22 C 1.47059 * 87.88616 * 27.34176 * 13 12 11 23 23 H 1.08005 * 119.99881 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.00371 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99314 * 180.02562 * 2 1 3 26 26 H 1.08992 * 109.47088 * 299.99907 * 4 3 2 27 27 H 1.09004 * 109.46692 * 59.99859 * 4 3 2 28 28 H 1.08999 * 109.47170 * 179.97438 * 4 3 2 29 29 H 0.96702 * 114.00203 * 59.99927 * 5 3 2 30 30 H 1.09000 * 109.47565 * 60.00075 * 6 3 2 31 31 H 1.09000 * 109.47270 * 300.00350 * 6 3 2 32 32 H 1.08994 * 109.47345 * 270.00261 * 10 9 7 33 33 H 1.09001 * 109.46733 * 30.00327 * 10 9 7 34 34 H 1.08996 * 109.47534 * 149.99922 * 10 9 7 35 35 H 1.09001 * 113.27729 * 13.06740 * 11 9 7 36 36 H 1.09008 * 113.46447 * 105.36204 * 12 11 9 37 37 H 1.08996 * 113.51824 * 334.94014 * 12 11 9 38 38 H 0.96995 * 120.00365 * 354.90363 * 17 16 14 39 39 H 1.08997 * 113.47135 * 87.43718 * 22 13 12 40 40 H 1.09007 * 113.47198 * 217.88025 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1350 2.3912 0.0006 6 6 2.9431 1.3860 1.2493 7 6 3.6963 2.6913 1.2496 8 8 3.5448 3.4790 0.3399 9 7 4.5389 2.9828 2.2603 10 6 4.7224 2.0311 3.3588 11 6 5.2715 4.2515 2.2603 12 6 6.7987 4.0965 2.2599 13 7 6.8609 5.2192 3.2077 14 6 7.7743 6.1868 3.5314 15 1 8.6687 6.3054 2.9378 16 6 7.5506 7.0152 4.6225 17 7 8.2515 8.1202 4.7645 18 14 6.2547 6.5619 5.8892 19 1 4.9486 7.1466 5.4923 20 1 6.1326 5.0839 5.9654 21 1 6.6525 7.0949 7.2170 22 6 5.5133 4.8416 3.6594 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8499 -0.9354 -0.0004 26 1 3.6514 0.5576 -1.2492 27 1 2.3165 1.3283 -2.1392 28 1 3.4879 2.3302 -1.2494 29 1 0.5439 2.4029 0.7659 30 1 3.6514 0.5575 1.2493 31 1 2.3165 1.3282 2.1392 32 1 3.9973 2.2399 4.1453 33 1 4.5750 1.0164 2.9888 34 1 5.7313 2.1287 3.7595 35 1 4.8946 4.9666 1.5291 36 1 7.2570 4.3164 1.2956 37 1 7.1400 3.1518 2.6829 38 1 8.9740 8.3188 4.1485 39 1 5.5149 4.0931 4.4517 40 1 4.8765 5.6964 3.8876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699709801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:03 Heat of formation + Delta-G solvation = 9.632092 kcal Electronic energy + Delta-G solvation = -21134.377222 eV Core-core repulsion = 17952.665310 eV Total energy + Delta-G solvation = -3181.711912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38420 -38.87068 -37.44302 -34.67328 -33.17960 -32.31905 -31.37696 -28.68825 -27.56770 -26.67269 -25.31138 -23.48114 -22.16192 -19.93366 -19.78207 -18.80014 -17.56338 -17.26430 -16.87546 -16.04753 -15.77454 -15.47180 -15.00150 -14.62005 -13.89294 -13.63272 -13.41753 -13.25253 -12.93045 -12.44439 -12.38647 -12.35033 -12.06624 -11.88298 -11.86286 -11.64853 -11.49634 -11.23358 -11.19091 -10.63991 -10.32175 -10.20911 -9.72295 -9.70206 -9.38120 -9.25712 -8.74068 -8.28206 -7.22294 -6.34086 -3.26500 1.90568 2.76441 3.10323 3.39155 3.44382 3.59689 4.08396 4.37801 4.54557 4.56753 4.76059 4.80484 4.92676 4.94696 5.07833 5.12873 5.30561 5.36147 5.44106 5.52419 5.55177 5.64241 5.75026 5.81383 5.87846 5.94681 6.14035 6.19833 6.28042 6.30665 6.37092 6.43451 6.54677 6.98578 7.06804 7.56004 7.59323 8.21316 8.37572 8.94273 9.46904 10.32075 11.16122 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039738 B = 0.004203 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.448187 B = 6659.572021 C = 6847.650138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.185 4.185 3 C 0.176 3.824 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.164 4.164 7 C 0.512 3.488 8 O -0.519 6.519 9 N -0.604 5.604 10 C 0.074 3.926 11 C 0.103 3.897 12 C 0.107 3.893 13 N -0.617 5.617 14 C -0.306 4.306 15 H 0.084 0.916 16 C -0.022 4.022 17 N -0.929 5.929 18 Si 1.063 2.937 19 H -0.292 1.292 20 H -0.283 1.283 21 H -0.294 1.294 22 C 0.093 3.907 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.368 0.632 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.034 -19.928 -5.682 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.204 4.204 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.342 6.342 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.394 6.394 9 N -0.338 5.338 10 C -0.069 4.069 11 C -0.001 4.001 12 C -0.021 4.021 13 N -0.345 5.345 14 C -0.432 4.432 15 H 0.101 0.899 16 C -0.222 4.222 17 N -0.571 5.571 18 Si 0.894 3.106 19 H -0.220 1.220 20 H -0.209 1.209 21 H -0.222 1.222 22 C -0.034 4.034 23 H 0.123 0.877 24 H 0.117 0.883 25 H 0.133 0.867 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.214 0.786 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.142 0.858 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.340 -18.623 -5.293 24.093 hybrid contribution 0.648 -1.019 -0.531 1.319 sum -13.692 -19.642 -5.824 24.641 Atomic orbital electron populations 1.23868 0.96055 1.02361 0.99676 1.23636 0.96753 0.98841 1.01144 1.19869 0.88025 0.83949 0.94698 1.21940 0.98834 1.04470 0.95197 1.86743 1.50041 1.48886 1.48493 1.22428 1.00305 0.97267 1.00415 1.20392 0.79365 0.88340 0.81939 1.90676 1.63986 1.49943 1.34843 1.47948 1.43533 1.19531 1.22771 1.21814 1.03115 0.92049 0.89942 1.23515 0.91963 0.84749 0.99906 1.22781 0.92934 0.91571 0.94781 1.45883 1.14835 1.30028 1.43744 1.20111 1.02553 1.08246 1.12262 0.89880 1.25798 1.03891 0.94177 0.98307 1.70892 1.22441 1.21455 1.42314 0.83762 0.75060 0.75255 0.76475 1.22011 1.20941 1.22158 1.23101 0.88420 0.97484 0.94366 0.87686 0.88307 0.86710 0.91960 0.92309 0.88555 0.78560 0.88156 0.88840 0.92548 0.91388 0.90349 0.85760 0.93322 0.94617 0.92737 0.93382 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 13.93 29.02 0.40 -0.93 16 2 C -0.19 -1.47 8.77 -36.03 -0.32 -1.79 16 3 C 0.18 1.81 0.94 -91.77 -0.09 1.73 16 4 C -0.15 -1.70 8.50 37.16 0.32 -1.38 16 5 O -0.54 -6.46 10.84 -53.50 -0.58 -7.04 16 6 C -0.16 -1.57 3.48 -27.88 -0.10 -1.66 16 7 C 0.51 7.27 7.23 -10.99 -0.08 7.19 16 8 O -0.52 -9.35 12.47 -12.71 -0.16 -9.51 16 9 N -0.60 -8.76 3.12 -173.56 -0.54 -9.30 16 10 C 0.07 0.80 8.92 59.85 0.53 1.34 16 11 C 0.10 1.90 4.57 -67.68 -0.31 1.59 16 12 C 0.11 2.15 8.24 -8.52 -0.07 2.08 16 13 N -0.62 -15.31 3.62 -184.65 -0.67 -15.98 16 14 C -0.31 -8.87 11.03 -15.06 -0.17 -9.04 16 15 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 16 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 17 N -0.93 -29.45 13.70 55.49 0.76 -28.69 16 18 Si 1.06 26.50 25.50 -169.99 -4.34 22.17 16 19 H -0.29 -7.06 6.97 56.52 0.39 -6.67 16 20 H -0.28 -6.42 5.66 56.52 0.32 -6.10 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 C 0.09 1.96 5.03 -8.39 -0.04 1.91 16 23 H 0.11 0.77 6.41 -52.48 -0.34 0.43 16 24 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 25 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 1.41 5.51 -51.93 -0.29 1.13 16 29 H 0.37 3.14 8.05 45.56 0.37 3.51 16 30 H 0.10 0.75 7.40 -51.93 -0.38 0.37 16 31 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 34 H 0.08 0.93 6.18 -51.93 -0.32 0.61 16 35 H 0.12 2.53 7.29 -51.93 -0.38 2.15 16 36 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.04 0.67 6.97 -51.93 -0.36 0.31 16 38 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 39 H 0.05 0.95 5.45 -51.93 -0.28 0.67 16 40 H 0.06 1.22 6.22 -51.93 -0.32 0.90 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -34.94 314.65 -6.05 -41.00 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.26 Total: 2.34 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.01 Total: 0.28 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.45 Total: -53.97 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.74 Total: -16.55 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -4.34 Total: 22.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.94 -6.05 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699709801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.629 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds