Wall clock time and date at job start Mon Mar 30 2020 01:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00445 * 2 1 4 4 C 1.52997 * 109.47313 * 239.99924 * 3 2 1 5 5 O 1.42900 * 109.46601 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.46863 * 119.99850 * 3 2 1 7 7 C 1.50700 * 109.46991 * 180.02562 * 6 3 2 8 8 O 1.21283 * 119.99918 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99890 * 180.02562 * 7 6 3 10 10 C 1.46498 * 120.00485 * 359.97438 * 9 7 6 11 11 C 1.46508 * 119.99979 * 179.97438 * 9 7 6 12 12 C 1.53496 * 114.20706 * 239.99886 * 11 9 7 13 13 N 1.47062 * 87.98485 * 220.14769 * 12 11 9 14 14 C 1.36939 * 136.05593 * 207.08750 * 13 12 11 15 15 H 1.08008 * 119.99868 * 7.82597 * 14 13 12 16 16 C 1.38808 * 120.00203 * 187.82575 * 14 13 12 17 17 N 1.31618 * 119.99998 * 195.17052 * 16 14 13 18 18 Si 1.86797 * 119.99840 * 15.16580 * 16 14 13 19 19 H 1.48503 * 109.47450 * 270.00422 * 18 16 14 20 20 H 1.48503 * 109.47360 * 30.00092 * 18 16 14 21 21 H 1.48498 * 109.47360 * 150.00270 * 18 16 14 22 22 C 1.47059 * 87.88616 * 27.34176 * 13 12 11 23 23 H 1.08005 * 119.99881 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.00371 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99314 * 180.02562 * 2 1 3 26 26 H 1.08992 * 109.47088 * 299.99907 * 4 3 2 27 27 H 1.09004 * 109.46692 * 59.99859 * 4 3 2 28 28 H 1.08999 * 109.47170 * 179.97438 * 4 3 2 29 29 H 0.96702 * 114.00203 * 59.99927 * 5 3 2 30 30 H 1.09000 * 109.47565 * 60.00075 * 6 3 2 31 31 H 1.09000 * 109.47270 * 300.00350 * 6 3 2 32 32 H 1.08994 * 109.47345 * 270.00261 * 10 9 7 33 33 H 1.09001 * 109.46733 * 30.00327 * 10 9 7 34 34 H 1.08996 * 109.47534 * 149.99922 * 10 9 7 35 35 H 1.09001 * 113.27729 * 13.06740 * 11 9 7 36 36 H 1.09008 * 113.46447 * 105.36204 * 12 11 9 37 37 H 1.08996 * 113.51824 * 334.94014 * 12 11 9 38 38 H 0.96995 * 120.00365 * 354.90363 * 17 16 14 39 39 H 1.08997 * 113.47135 * 87.43718 * 22 13 12 40 40 H 1.09007 * 113.47198 * 217.88025 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1350 2.3912 0.0006 6 6 2.9431 1.3860 1.2493 7 6 3.6963 2.6913 1.2496 8 8 3.5448 3.4790 0.3399 9 7 4.5389 2.9828 2.2603 10 6 4.7224 2.0311 3.3588 11 6 5.2715 4.2515 2.2603 12 6 6.7987 4.0965 2.2599 13 7 6.8609 5.2192 3.2077 14 6 7.7743 6.1868 3.5314 15 1 8.6687 6.3054 2.9378 16 6 7.5506 7.0152 4.6225 17 7 8.2515 8.1202 4.7645 18 14 6.2547 6.5619 5.8892 19 1 4.9486 7.1466 5.4923 20 1 6.1326 5.0839 5.9654 21 1 6.6525 7.0949 7.2170 22 6 5.5133 4.8416 3.6594 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8499 -0.9354 -0.0004 26 1 3.6514 0.5576 -1.2492 27 1 2.3165 1.3283 -2.1392 28 1 3.4879 2.3302 -1.2494 29 1 0.5439 2.4029 0.7659 30 1 3.6514 0.5575 1.2493 31 1 2.3165 1.3282 2.1392 32 1 3.9973 2.2399 4.1453 33 1 4.5750 1.0164 2.9888 34 1 5.7313 2.1287 3.7595 35 1 4.8946 4.9666 1.5291 36 1 7.2570 4.3164 1.2956 37 1 7.1400 3.1518 2.6829 38 1 8.9740 8.3188 4.1485 39 1 5.5149 4.0931 4.4517 40 1 4.8765 5.6964 3.8876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699709801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:02 Heat of formation + Delta-G solvation = -17.054779 kcal Electronic energy + Delta-G solvation = -21135.534452 eV Core-core repulsion = 17952.665310 eV Total energy + Delta-G solvation = -3182.869141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54719 -40.14595 -38.55464 -35.97964 -34.44360 -33.89883 -32.14149 -30.17512 -28.73838 -27.80040 -26.98444 -24.80370 -23.40768 -21.45579 -20.54062 -20.04141 -19.55931 -18.22991 -17.94567 -17.28779 -16.85165 -16.60238 -16.27546 -15.84885 -15.37706 -15.29186 -14.79822 -14.33310 -13.82895 -13.62545 -13.57252 -13.35930 -13.20777 -13.13334 -13.02033 -12.99927 -12.59835 -12.48980 -12.40029 -11.96736 -11.93762 -11.54369 -11.29719 -11.09059 -10.90128 -10.49081 -10.27515 -9.52377 -9.29230 -8.67460 -5.52301 1.35762 1.38479 1.49890 1.65253 1.71505 1.97864 2.53212 3.02536 3.12750 3.37504 3.53157 3.64223 3.80621 4.06304 4.08826 4.13390 4.29506 4.38722 4.46075 4.53502 4.56407 4.62288 4.67690 4.72678 4.80678 4.90299 4.95340 5.02051 5.09530 5.13734 5.19080 5.41381 5.62784 5.71109 5.87270 5.90638 6.50912 6.64813 6.91493 7.27851 7.30507 8.20961 8.84424 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039738 B = 0.004203 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.448187 B = 6659.572021 C = 6847.650138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.187 4.187 3 C 0.171 3.829 4 C -0.149 4.149 5 O -0.565 6.565 6 C -0.152 4.152 7 C 0.507 3.493 8 O -0.565 6.565 9 N -0.604 5.604 10 C 0.064 3.936 11 C 0.125 3.875 12 C 0.110 3.890 13 N -0.651 5.651 14 C -0.296 4.296 15 H 0.048 0.952 16 C -0.083 4.083 17 N -0.966 5.966 18 Si 1.103 2.897 19 H -0.282 1.282 20 H -0.243 1.243 21 H -0.299 1.299 22 C 0.094 3.906 23 H 0.099 0.901 24 H 0.116 0.884 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.380 0.620 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.247 0.753 39 H 0.078 0.922 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 -23.977 -4.571 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.205 4.205 3 C 0.130 3.870 4 C -0.206 4.206 5 O -0.372 6.372 6 C -0.191 4.191 7 C 0.297 3.703 8 O -0.443 6.443 9 N -0.337 5.337 10 C -0.077 4.077 11 C 0.019 3.981 12 C -0.017 4.017 13 N -0.380 5.380 14 C -0.423 4.423 15 H 0.066 0.934 16 C -0.275 4.275 17 N -0.610 5.610 18 Si 0.927 3.073 19 H -0.209 1.209 20 H -0.167 1.167 21 H -0.227 1.227 22 C -0.032 4.032 23 H 0.117 0.883 24 H 0.134 0.866 25 H 0.154 0.846 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.229 0.771 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.665 -22.754 -4.202 28.515 hybrid contribution 1.364 0.194 -1.045 1.729 sum -15.302 -22.560 -5.247 27.760 Atomic orbital electron populations 1.24027 0.96074 1.02946 0.98593 1.23555 0.96792 0.98111 1.02045 1.19951 0.88005 0.84767 0.94261 1.21930 0.99229 1.03367 0.96106 1.86714 1.50788 1.50105 1.49602 1.22461 1.00542 0.94905 1.01224 1.21290 0.78792 0.89519 0.80726 1.90684 1.65302 1.51799 1.36558 1.47958 1.43095 1.18433 1.24203 1.22150 1.03164 0.93096 0.89302 1.22731 0.91254 0.86504 0.97563 1.22942 0.94294 0.91114 0.93327 1.45859 1.15832 1.31044 1.45230 1.19936 1.01975 1.09304 1.11125 0.93375 1.27218 1.05968 0.93726 1.00552 1.71012 1.23589 1.23477 1.42950 0.83335 0.72963 0.77466 0.73567 1.20911 1.16727 1.22684 1.23280 0.85870 0.97699 0.96337 0.88303 0.86590 0.84609 0.89690 0.93005 0.92197 0.77144 0.84999 0.85925 0.90827 0.87322 0.91196 0.88416 0.94467 0.91649 0.94402 0.90510 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 13.93 67.78 0.94 -1.06 16 2 C -0.19 -2.23 8.77 25.65 0.22 -2.00 16 3 C 0.17 3.04 0.94 -11.54 -0.01 3.03 16 4 C -0.15 -3.23 8.50 71.98 0.61 -2.62 16 5 O -0.56 -12.80 10.84 -131.51 -1.43 -14.23 16 6 C -0.15 -2.23 3.48 29.85 0.10 -2.13 16 7 C 0.51 13.11 7.23 87.66 0.63 13.75 16 8 O -0.56 -20.24 12.47 14.43 0.18 -20.06 16 9 N -0.60 -15.57 3.12 -821.40 -2.56 -18.13 16 10 C 0.06 1.05 8.92 127.77 1.14 2.19 16 11 C 0.13 4.48 4.57 45.55 0.21 4.69 16 12 C 0.11 4.31 8.24 83.17 0.69 4.99 16 13 N -0.65 -32.07 3.62 -738.12 -2.67 -34.74 16 14 C -0.30 -17.64 11.03 84.03 0.93 -16.71 16 15 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 16 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 17 N -0.97 -63.41 13.70 21.65 0.30 -63.11 16 18 Si 1.10 52.74 25.50 68.60 1.75 54.49 16 19 H -0.28 -12.94 6.97 99.48 0.69 -12.25 16 20 H -0.24 -9.90 5.66 99.48 0.56 -9.34 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 22 C 0.09 3.74 5.03 83.26 0.42 4.16 16 23 H 0.10 1.22 6.41 -2.91 -0.02 1.20 16 24 H 0.12 0.90 8.06 -2.91 -0.02 0.88 16 25 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.06 1.77 5.51 -2.39 -0.01 1.76 16 29 H 0.38 5.79 8.05 -74.06 -0.60 5.19 16 30 H 0.13 1.16 7.40 -2.39 -0.02 1.14 16 31 H 0.12 1.17 8.11 -2.39 -0.02 1.15 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 0.92 6.44 -2.39 -0.02 0.90 16 34 H 0.07 1.30 6.18 -2.39 -0.01 1.29 16 35 H 0.10 4.05 7.29 -2.39 -0.02 4.03 16 36 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.07 2.24 6.97 -2.39 -0.02 2.22 16 38 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 39 H 0.08 2.67 5.45 -2.39 -0.01 2.66 16 40 H 0.04 1.85 6.22 -2.38 -0.01 1.83 16 Total: -1.00 -80.72 314.65 2.17 -78.55 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.25 Total: 13.49 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.35 Total: 3.75 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -4.94 Total: -115.99 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.25 Total: -34.29 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 1.75 Total: 54.49 kcal Total: -80.72 2.17 -78.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699709801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.497 kcal (2) G-P(sol) polarization free energy of solvation -80.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds