Wall clock time and date at job start Mon Mar 30 2020 01:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99726 * 2 1 4 4 C 1.53001 * 109.47043 * 239.99966 * 3 2 1 5 5 O 1.42898 * 109.46883 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47079 * 119.99612 * 3 2 1 7 7 C 1.50704 * 109.46727 * 179.97438 * 6 3 2 8 8 O 1.21278 * 120.00421 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99482 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99467 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46729 * 179.97438 * 10 9 7 12 12 C 1.53495 * 114.20448 * 175.00023 * 11 10 9 13 13 N 1.47066 * 87.98658 * 87.51959 * 12 11 10 14 14 C 1.36937 * 136.06113 * 206.85859 * 13 12 11 15 15 H 1.07995 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.38817 * 120.00320 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99557 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47363 * 60.00463 * 18 16 14 20 20 H 1.48506 * 109.46719 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47174 * 300.00290 * 18 16 14 22 22 C 1.47067 * 87.88528 * 27.11900 * 13 12 11 23 23 H 1.07996 * 119.99452 * 180.02562 * 1 2 3 24 24 H 1.07994 * 120.00249 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00249 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46654 * 299.99650 * 4 3 2 27 27 H 1.08996 * 109.47316 * 59.99870 * 4 3 2 28 28 H 1.09002 * 109.46864 * 179.97438 * 4 3 2 29 29 H 0.96698 * 114.00238 * 60.00341 * 5 3 2 30 30 H 1.08995 * 109.46925 * 60.00376 * 6 3 2 31 31 H 1.09001 * 109.47156 * 299.99796 * 6 3 2 32 32 H 0.96991 * 120.00203 * 0.02562 * 9 7 6 33 33 H 1.09003 * 109.46922 * 60.00635 * 10 9 7 34 34 H 1.08994 * 109.47369 * 300.00007 * 10 9 7 35 35 H 1.08994 * 113.28034 * 41.93499 * 11 10 9 36 36 H 1.09005 * 113.46950 * 332.74525 * 12 11 10 37 37 H 1.08994 * 113.52293 * 202.31009 * 12 11 10 38 38 H 0.96999 * 119.99537 * 179.97438 * 17 16 14 39 39 H 1.09007 * 113.46858 * 87.65629 * 22 13 12 40 40 H 1.08993 * 113.47208 * 218.09965 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3863 -1.2492 5 8 1.1348 2.3913 -0.0006 6 6 2.9430 1.3863 1.2493 7 6 3.6969 2.6912 1.2489 8 8 3.5453 3.4790 0.3393 9 7 4.5397 2.9828 2.2595 10 6 5.2730 4.2511 2.2588 11 6 6.1525 4.3323 3.5082 12 6 7.0627 5.5672 3.5579 13 7 5.9541 6.2946 4.1940 14 6 5.5487 7.6001 4.2744 15 1 6.1174 8.3735 3.7797 16 6 4.4062 7.9293 4.9909 17 7 3.7129 6.9866 5.5934 18 14 3.8529 9.7101 5.0998 19 1 3.5822 10.2288 3.7350 20 1 2.6155 9.7948 5.9165 21 1 4.9214 10.5225 5.7352 22 6 5.4760 5.0036 4.7115 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5400 0.9352 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 3.6515 0.5578 -1.2491 27 1 2.3165 1.3285 -2.1392 28 1 3.4877 2.3305 -1.2494 29 1 0.5432 2.4034 0.7642 30 1 3.6513 0.5579 1.2493 31 1 2.3163 1.3286 2.1392 32 1 4.6612 2.3527 2.9867 33 1 4.5651 5.0800 2.2588 34 1 5.8994 4.3081 1.3687 35 1 6.6577 3.3950 3.7410 36 1 7.3259 5.9525 2.5727 37 1 7.9294 5.4429 4.2070 38 1 2.9148 7.2167 6.0943 39 1 5.9198 4.7282 5.6683 40 1 4.3901 4.9095 4.7073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713898904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:10 Heat of formation + Delta-G solvation = -7.085293 kcal Electronic energy + Delta-G solvation = -20688.167090 eV Core-core repulsion = 17505.730258 eV Total energy + Delta-G solvation = -3182.436832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.98595 -38.51606 -37.56555 -34.14054 -33.07487 -32.16749 -31.35427 -29.05122 -27.74311 -25.62568 -24.58242 -22.96073 -22.18657 -20.20252 -19.74128 -18.72050 -17.22275 -16.75319 -16.31679 -15.97469 -15.45415 -15.19358 -14.80123 -14.51222 -13.96284 -13.74988 -13.49781 -12.91837 -12.60969 -12.50116 -12.34435 -12.18223 -11.67636 -11.55148 -11.49781 -11.16320 -11.04411 -10.93918 -10.70662 -10.52622 -10.23184 -9.91223 -9.79701 -9.63911 -9.33667 -9.20212 -8.78696 -8.57214 -6.86455 -5.74847 -3.06882 1.99636 2.95813 3.42711 3.46662 3.47496 3.47577 4.22455 4.48737 4.59171 4.65797 4.89160 5.04768 5.17217 5.29289 5.34082 5.38499 5.41765 5.58083 5.60753 5.64445 5.82189 5.99725 6.03591 6.18722 6.28433 6.37752 6.39209 6.52846 6.55353 6.61223 6.75085 6.89050 7.19066 7.30733 7.56557 7.68464 7.85661 7.99913 8.59348 9.05984 9.72820 10.65834 11.42723 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.004126 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.588945 B = 6783.975319 C = 7389.524756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.537 6.537 6 C -0.166 4.166 7 C 0.509 3.491 8 O -0.521 6.521 9 N -0.726 5.726 10 C 0.152 3.848 11 C -0.161 4.161 12 C 0.126 3.874 13 N -0.609 5.609 14 C -0.218 4.218 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.159 3.841 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.369 0.631 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.396 0.604 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.035 0.965 38 H 0.253 0.747 39 H 0.024 0.976 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -17.126 -7.707 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.204 4.204 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.342 6.342 6 C -0.206 4.206 7 C 0.294 3.706 8 O -0.397 6.397 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.181 4.181 12 C -0.001 4.001 13 N -0.335 5.335 14 C -0.346 4.346 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.033 3.967 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.132 0.868 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.216 0.784 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.229 0.771 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.680 -16.090 -8.835 18.433 hybrid contribution -0.445 0.327 1.358 1.466 sum -2.126 -15.763 -7.477 17.576 Atomic orbital electron populations 1.23873 0.96086 1.02371 0.99623 1.23640 0.96757 0.98837 1.01196 1.19837 0.88074 0.83968 0.94614 1.21939 0.98843 1.04361 0.95257 1.86736 1.50012 1.48837 1.48604 1.22390 1.00462 0.97197 1.00600 1.20309 0.79660 0.88258 0.82362 1.90684 1.63773 1.49840 1.35383 1.46076 1.45036 1.21688 1.24930 1.20983 0.94581 0.85302 0.96246 1.23268 0.99347 0.97640 0.97826 1.22352 0.91790 0.89439 0.96477 1.45610 1.25799 1.02775 1.59295 1.18895 1.06595 0.81532 1.27552 0.90196 1.24769 0.97868 0.97763 0.99929 1.69809 1.18452 1.30917 1.37605 0.86199 0.77818 0.84114 0.77657 1.20967 1.21557 1.21220 1.22139 0.99731 0.83550 0.91300 0.88344 0.87642 0.86757 0.92050 0.92373 0.88570 0.78375 0.88317 0.88749 0.77096 0.89976 0.92436 0.91166 0.94043 0.94718 0.93679 0.95850 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 13.93 29.01 0.40 -1.13 16 2 C -0.19 -1.65 8.77 -36.02 -0.32 -1.97 16 3 C 0.18 2.00 0.94 -91.77 -0.09 1.92 16 4 C -0.15 -1.78 8.50 37.16 0.32 -1.47 16 5 O -0.54 -7.31 10.85 -53.48 -0.58 -7.89 16 6 C -0.17 -1.74 4.93 -27.88 -0.14 -1.88 16 7 C 0.51 7.65 7.39 -10.98 -0.08 7.57 16 8 O -0.52 -10.05 12.96 -12.69 -0.16 -10.22 16 9 N -0.73 -10.57 5.56 -60.29 -0.33 -10.91 16 10 C 0.15 2.73 5.50 -4.04 -0.02 2.71 16 11 C -0.16 -2.86 4.18 -90.10 -0.38 -3.24 16 12 C 0.13 2.56 8.26 -8.51 -0.07 2.49 16 13 N -0.61 -15.62 3.62 -184.76 -0.67 -16.29 16 14 C -0.22 -6.22 10.75 -15.06 -0.16 -6.38 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -27.51 11.51 55.49 0.64 -26.87 16 18 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 C 0.16 3.63 6.89 -8.51 -0.06 3.57 16 23 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 24 H 0.11 0.91 6.41 -52.49 -0.34 0.57 16 25 H 0.11 0.83 8.06 -52.49 -0.42 0.40 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 1.46 5.51 -51.93 -0.29 1.18 16 29 H 0.37 3.86 8.05 45.56 0.37 4.23 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.40 4.58 8.47 -40.82 -0.35 4.24 16 33 H 0.08 1.87 7.91 -51.93 -0.41 1.46 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.87 7.09 -51.93 -0.37 1.50 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -34.39 329.86 -7.42 -41.81 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.58 Total: 5.95 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.69 Total: 1.90 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.36 Total: -54.07 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.74 Total: -18.11 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.39 -7.42 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713898904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.728 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds