Wall clock time and date at job start Mon Mar 30 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99726 * 2 1 4 4 C 1.53001 * 109.47043 * 239.99966 * 3 2 1 5 5 O 1.42898 * 109.46883 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47079 * 119.99612 * 3 2 1 7 7 C 1.50704 * 109.46727 * 179.97438 * 6 3 2 8 8 O 1.21278 * 120.00421 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99482 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99467 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46729 * 179.97438 * 10 9 7 12 12 C 1.53495 * 114.20448 * 175.00023 * 11 10 9 13 13 N 1.47066 * 87.98658 * 87.51959 * 12 11 10 14 14 C 1.36937 * 136.06113 * 206.85859 * 13 12 11 15 15 H 1.07995 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.38817 * 120.00320 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99557 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47363 * 60.00463 * 18 16 14 20 20 H 1.48506 * 109.46719 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47174 * 300.00290 * 18 16 14 22 22 C 1.47067 * 87.88528 * 27.11900 * 13 12 11 23 23 H 1.07996 * 119.99452 * 180.02562 * 1 2 3 24 24 H 1.07994 * 120.00249 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00249 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46654 * 299.99650 * 4 3 2 27 27 H 1.08996 * 109.47316 * 59.99870 * 4 3 2 28 28 H 1.09002 * 109.46864 * 179.97438 * 4 3 2 29 29 H 0.96698 * 114.00238 * 60.00341 * 5 3 2 30 30 H 1.08995 * 109.46925 * 60.00376 * 6 3 2 31 31 H 1.09001 * 109.47156 * 299.99796 * 6 3 2 32 32 H 0.96991 * 120.00203 * 0.02562 * 9 7 6 33 33 H 1.09003 * 109.46922 * 60.00635 * 10 9 7 34 34 H 1.08994 * 109.47369 * 300.00007 * 10 9 7 35 35 H 1.08994 * 113.28034 * 41.93499 * 11 10 9 36 36 H 1.09005 * 113.46950 * 332.74525 * 12 11 10 37 37 H 1.08994 * 113.52293 * 202.31009 * 12 11 10 38 38 H 0.96999 * 119.99537 * 179.97438 * 17 16 14 39 39 H 1.09007 * 113.46858 * 87.65629 * 22 13 12 40 40 H 1.08993 * 113.47208 * 218.09965 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3863 -1.2492 5 8 1.1348 2.3913 -0.0006 6 6 2.9430 1.3863 1.2493 7 6 3.6969 2.6912 1.2489 8 8 3.5453 3.4790 0.3393 9 7 4.5397 2.9828 2.2595 10 6 5.2730 4.2511 2.2588 11 6 6.1525 4.3323 3.5082 12 6 7.0627 5.5672 3.5579 13 7 5.9541 6.2946 4.1940 14 6 5.5487 7.6001 4.2744 15 1 6.1174 8.3735 3.7797 16 6 4.4062 7.9293 4.9909 17 7 3.7129 6.9866 5.5934 18 14 3.8529 9.7101 5.0998 19 1 3.5822 10.2288 3.7350 20 1 2.6155 9.7948 5.9165 21 1 4.9214 10.5225 5.7352 22 6 5.4760 5.0036 4.7115 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5400 0.9352 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 3.6515 0.5578 -1.2491 27 1 2.3165 1.3285 -2.1392 28 1 3.4877 2.3305 -1.2494 29 1 0.5432 2.4034 0.7642 30 1 3.6513 0.5579 1.2493 31 1 2.3163 1.3286 2.1392 32 1 4.6612 2.3527 2.9867 33 1 4.5651 5.0800 2.2588 34 1 5.8994 4.3081 1.3687 35 1 6.6577 3.3950 3.7410 36 1 7.3259 5.9525 2.5727 37 1 7.9294 5.4429 4.2070 38 1 2.9148 7.2167 6.0943 39 1 5.9198 4.7282 5.6683 40 1 4.3901 4.9095 4.7073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713898904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:09 Heat of formation + Delta-G solvation = -32.867289 kcal Electronic energy + Delta-G solvation = -20689.285082 eV Core-core repulsion = 17505.730258 eV Total energy + Delta-G solvation = -3183.554823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14356 -40.04993 -38.71136 -35.56738 -34.20305 -33.92940 -32.20543 -30.57416 -29.11710 -27.19565 -26.31906 -24.40675 -23.47501 -21.44832 -20.53296 -20.30422 -18.73978 -18.15939 -17.47352 -17.10985 -16.94339 -16.51813 -16.27241 -15.67062 -15.56085 -15.26558 -14.77383 -14.44949 -14.02178 -13.78960 -13.38239 -13.16918 -13.09577 -12.91908 -12.82751 -12.63885 -12.46027 -12.42634 -12.28754 -11.97004 -11.81928 -11.61183 -11.15151 -11.03688 -10.88869 -10.51437 -10.28641 -9.92031 -8.90108 -7.91488 -5.22995 1.34752 1.42725 1.46556 1.51916 1.79831 2.31641 2.46805 3.30772 3.38756 3.52422 3.66270 3.74934 3.83608 4.00621 4.09507 4.29371 4.44125 4.55101 4.62552 4.67283 4.76490 4.80207 4.89472 4.89982 4.97366 5.00000 5.12274 5.18720 5.24801 5.36618 5.52530 5.57095 5.67603 5.70648 5.86601 5.96074 6.72208 6.87413 6.91843 7.45299 7.60650 8.61727 9.25904 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.004126 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.588945 B = 6783.975319 C = 7389.524756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C 0.169 3.831 4 C -0.147 4.147 5 O -0.567 6.567 6 C -0.155 4.155 7 C 0.502 3.498 8 O -0.570 6.570 9 N -0.717 5.717 10 C 0.164 3.836 11 C -0.122 4.122 12 C 0.123 3.877 13 N -0.644 5.644 14 C -0.230 4.230 15 H 0.081 0.919 16 C -0.066 4.066 17 N -0.951 5.951 18 Si 0.975 3.025 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.275 1.275 22 C 0.155 3.845 23 H 0.118 0.882 24 H 0.096 0.904 25 H 0.140 0.860 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.378 0.622 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.414 0.586 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.247 0.753 39 H 0.023 0.977 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 -19.463 -7.690 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.204 4.204 3 C 0.128 3.872 4 C -0.204 4.204 5 O -0.374 6.374 6 C -0.194 4.194 7 C 0.290 3.710 8 O -0.449 6.449 9 N -0.369 5.369 10 C 0.039 3.961 11 C -0.142 4.142 12 C -0.003 4.003 13 N -0.371 5.371 14 C -0.359 4.359 15 H 0.099 0.901 16 C -0.259 4.259 17 N -0.600 5.600 18 Si 0.803 3.197 19 H -0.207 1.207 20 H -0.219 1.219 21 H -0.201 1.201 22 C 0.029 3.971 23 H 0.136 0.864 24 H 0.114 0.886 25 H 0.157 0.843 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.227 0.773 30 H 0.154 0.846 31 H 0.132 0.868 32 H 0.251 0.749 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.818 -18.469 -8.805 20.477 hybrid contribution -0.675 1.040 1.293 1.792 sum -1.493 -17.429 -7.512 19.038 Atomic orbital electron populations 1.24028 0.96185 1.02888 0.98823 1.23585 0.96764 0.98185 1.01839 1.20004 0.88047 0.84695 0.94487 1.21925 0.99196 1.03544 0.95761 1.86706 1.50821 1.50392 1.49505 1.22411 1.00740 0.95259 1.01026 1.21206 0.79109 0.89403 0.81284 1.90683 1.65143 1.51794 1.37231 1.45937 1.44707 1.20635 1.25648 1.20596 0.93538 0.85274 0.96673 1.23000 0.97485 0.98831 0.94847 1.22592 0.91548 0.89488 0.96626 1.45974 1.28250 1.02686 1.60182 1.19277 1.06590 0.83284 1.26705 0.90131 1.25573 0.98308 1.01628 1.00417 1.69988 1.18725 1.32555 1.38713 0.85209 0.77273 0.79743 0.77495 1.20690 1.21858 1.20078 1.22134 0.97998 0.83601 0.93323 0.86410 0.88615 0.84274 0.89258 0.92994 0.92097 0.77333 0.84562 0.86790 0.74947 0.95692 0.91902 0.86012 0.93466 0.92452 0.94401 0.95886 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 13.93 67.78 0.94 -1.70 16 2 C -0.19 -2.76 8.77 25.65 0.22 -2.54 16 3 C 0.17 3.56 0.94 -11.54 -0.01 3.55 16 4 C -0.15 -3.44 8.50 71.98 0.61 -2.83 16 5 O -0.57 -15.54 10.85 -131.53 -1.43 -16.96 16 6 C -0.15 -2.83 4.93 29.85 0.15 -2.68 16 7 C 0.50 14.68 7.39 87.66 0.65 15.33 16 8 O -0.57 -22.56 12.96 14.42 0.19 -22.37 16 9 N -0.72 -19.82 5.56 -463.04 -2.57 -22.39 16 10 C 0.16 5.82 5.50 86.38 0.47 6.30 16 11 C -0.12 -4.11 4.18 -10.46 -0.04 -4.15 16 12 C 0.12 4.77 8.26 83.18 0.69 5.46 16 13 N -0.64 -33.31 3.62 -738.46 -2.67 -35.98 16 14 C -0.23 -13.33 10.75 84.03 0.90 -12.43 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 16 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 17 N -0.95 -58.50 11.51 21.65 0.25 -58.25 16 18 Si 0.97 47.32 29.55 68.60 2.03 49.34 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 20 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 22 C 0.16 7.10 6.89 83.18 0.57 7.67 16 23 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 24 H 0.10 1.56 6.41 -2.91 -0.02 1.54 16 25 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.89 5.51 -2.39 -0.01 1.88 16 29 H 0.38 7.99 8.05 -74.06 -0.60 7.39 16 30 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.41 8.36 8.47 -92.72 -0.79 7.57 16 33 H 0.02 1.18 7.91 -2.39 -0.02 1.16 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.05 1.77 8.12 -2.38 -0.02 1.75 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.04 1.97 7.09 -2.39 -0.02 1.96 16 Total: -1.00 -78.92 329.86 1.08 -77.85 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -0.34 Total: 20.21 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.63 Total: 8.56 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -4.99 Total: -116.62 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.24 Total: -39.34 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -78.92 1.08 -77.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713898904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.978 kcal (2) G-P(sol) polarization free energy of solvation -78.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds