Wall clock time and date at job start Mon Mar 30 2020 01:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 H 1.08993 * 109.47331 * 305.00434 * 3 2 1 5 5 C 1.52997 * 109.46997 * 185.00139 * 3 2 1 6 6 N 1.46506 * 109.47289 * 185.00271 * 5 3 2 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 3 8 8 O 1.21284 * 120.00066 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99838 * 180.02562 * 7 6 5 10 10 H 1.09007 * 115.50965 * 325.37068 * 9 7 6 11 11 C 1.52994 * 117.43576 * 110.65084 * 9 7 6 12 12 H 1.08998 * 119.80832 * 355.36850 * 11 9 7 13 13 C 1.56587 * 116.78164 * 197.57916 * 11 9 7 14 14 O 1.44419 * 104.82772 * 273.07211 * 13 11 9 15 15 C 1.44425 * 105.27905 * 40.92646 * 14 13 11 16 16 C 1.52997 * 117.43526 * 180.02562 * 9 7 6 17 17 H 1.09005 * 119.80584 * 4.63378 * 16 9 7 18 18 N 1.46502 * 109.46950 * 65.00465 * 3 2 1 19 19 C 1.36937 * 120.00242 * 274.99820 * 18 3 2 20 20 H 1.08000 * 119.99698 * 0.02562 * 19 18 3 21 21 C 1.38808 * 120.00426 * 179.97438 * 19 18 3 22 22 N 1.31619 * 120.00011 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00285 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47218 * 89.99968 * 23 21 19 25 25 H 1.48496 * 109.47069 * 210.00432 * 23 21 19 26 26 H 1.48500 * 109.47007 * 329.99970 * 23 21 19 27 27 H 1.08994 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.46941 * 299.99652 * 1 2 3 29 29 H 1.09001 * 109.47547 * 59.99084 * 1 2 3 30 30 H 1.08996 * 109.46695 * 240.00815 * 2 1 3 31 31 H 1.08991 * 109.47442 * 120.00380 * 2 1 3 32 32 H 1.09001 * 109.47289 * 65.00143 * 5 3 2 33 33 H 1.09004 * 109.47261 * 305.00399 * 5 3 2 34 34 H 0.97001 * 119.99251 * 0.02562 * 6 5 3 35 35 H 1.09000 * 110.00903 * 154.40815 * 13 11 9 36 36 H 1.09005 * 110.70511 * 32.09017 * 13 11 9 37 37 H 1.08990 * 110.37821 * 200.65608 * 15 14 13 38 38 H 1.09005 * 110.46904 * 78.36050 * 15 14 13 39 39 H 0.97004 * 119.99954 * 94.99910 * 18 3 2 40 40 H 0.96993 * 120.00405 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0868 8 8 6.1633 2.1484 -0.2593 9 6 5.8982 4.4747 0.0370 10 1 5.2536 5.2468 -0.3832 11 6 6.6911 4.8288 1.2966 12 1 6.7996 4.0929 2.0933 13 6 6.8511 6.3515 1.6248 14 8 8.0238 6.7665 0.8911 15 6 7.9245 6.1068 -0.3898 16 6 7.4100 4.6872 -0.0642 17 1 8.0613 3.8443 -0.2954 18 7 1.6525 2.0974 1.2519 19 6 0.4157 2.6734 1.3690 20 1 -0.2743 2.6446 0.5386 21 6 0.0483 3.2935 2.5553 22 7 0.8889 3.3283 3.5675 23 14 -1.6391 4.0786 2.7153 24 1 -2.6051 3.0752 3.2302 25 1 -1.5649 5.2236 3.6580 26 1 -2.0887 4.5612 1.3848 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.8932 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8498 1.0377 -1.0961 33 1 3.9954 0.8310 0.6658 34 1 3.4410 3.5482 0.1316 35 1 7.0051 6.4881 2.6952 36 1 5.9772 6.9114 1.2918 37 1 8.9030 6.0554 -0.8670 38 1 7.2162 6.6285 -1.0334 39 1 2.2720 2.1230 1.9978 40 1 0.6324 3.7619 4.3963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714099505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:53 Heat of formation + Delta-G solvation = -46.297736 kcal Electronic energy + Delta-G solvation = -20644.277249 eV Core-core repulsion = 17460.140037 eV Total energy + Delta-G solvation = -3184.137211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63589 -38.87427 -36.75049 -34.58745 -33.72889 -32.40294 -29.82078 -28.77374 -28.26622 -25.97469 -23.81879 -22.83564 -21.64159 -20.73832 -20.22816 -19.63368 -17.69319 -17.09229 -16.04925 -15.87935 -15.35859 -15.26186 -15.16720 -14.45793 -14.02943 -13.86745 -13.32106 -13.10008 -12.97343 -12.81667 -12.58687 -12.16818 -11.83239 -11.63921 -11.48451 -11.00492 -10.93622 -10.77993 -10.50785 -10.47027 -10.34283 -10.24142 -10.05718 -9.80182 -9.62614 -9.56532 -8.99857 -8.68963 -7.08155 -5.85817 -3.15247 2.56686 3.28521 3.36686 3.42594 3.44099 3.62114 3.87992 4.45956 4.49685 4.51873 4.71935 4.78155 5.01789 5.14513 5.22662 5.36019 5.40259 5.50509 5.52092 5.57873 5.61894 5.87758 5.92434 5.92619 5.94239 5.99496 6.11924 6.38533 6.50467 6.53620 6.53722 6.57055 6.84391 6.98265 7.20483 7.62266 7.87462 8.31415 8.49325 9.43483 9.98065 10.34069 11.36028 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.004952 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.504233 B = 5652.552797 C = 6965.034790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.704 5.704 7 C 0.540 3.460 8 O -0.553 6.553 9 C -0.147 4.147 10 H 0.123 0.877 11 C -0.160 4.160 12 H 0.131 0.869 13 C 0.073 3.927 14 O -0.373 6.373 15 C 0.074 3.926 16 C -0.166 4.166 17 H 0.132 0.868 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.903 3.097 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.412 0.588 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.122 2.893 -7.665 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.355 5.355 7 C 0.325 3.675 8 O -0.432 6.432 9 C -0.168 4.168 10 H 0.141 0.859 11 C -0.179 4.179 12 H 0.149 0.851 13 C -0.004 4.004 14 O -0.292 6.292 15 C -0.003 4.003 16 C -0.185 4.185 17 H 0.150 0.850 18 N -0.364 5.364 19 C -0.369 4.369 20 H 0.091 0.909 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.734 3.266 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.249 0.751 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.656 2.474 -7.729 12.614 hybrid contribution -1.401 0.435 0.455 1.536 sum 8.256 2.909 -7.274 11.381 Atomic orbital electron populations 1.21769 0.95697 0.99663 1.03244 1.22067 0.96998 0.98375 1.00032 1.20565 0.89841 0.92856 0.91470 0.92823 1.21699 0.95708 0.82489 1.01101 1.45895 1.06856 1.10953 1.71769 1.19421 0.82619 0.88914 0.76522 1.90665 1.56323 1.45990 1.50249 1.22396 0.94822 0.96768 1.02855 0.85921 1.24609 1.03255 0.98570 0.91497 0.85127 1.23354 0.88556 0.90452 0.97999 1.89172 1.43702 1.69404 1.26928 1.22932 1.01905 0.89002 0.86416 1.24151 0.93370 0.99992 1.00999 0.84973 1.42456 1.16780 1.65867 1.11261 1.19201 0.91928 1.27790 0.98013 0.90909 1.24728 0.98032 1.01546 0.96360 1.69656 1.35150 1.48932 1.03979 0.86264 0.84223 0.78799 0.77333 1.21739 1.21841 1.20775 0.94851 0.89670 0.94112 0.93846 0.92523 0.91823 0.91822 0.75134 0.88054 0.91279 0.88280 0.91783 0.78094 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.16 2.94 2.59 -67.93 -0.18 2.76 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.91 5.23 -4.04 -0.02 1.88 16 6 N -0.70 -11.41 5.39 -60.29 -0.32 -11.74 16 7 C 0.54 8.75 7.61 -10.99 -0.08 8.66 16 8 O -0.55 -10.58 16.34 5.55 0.09 -10.49 16 9 C -0.15 -1.91 5.70 -91.78 -0.52 -2.44 16 10 H 0.12 1.37 8.14 -51.92 -0.42 0.95 16 11 C -0.16 -2.01 7.09 -87.87 -0.62 -2.63 16 12 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 13 C 0.07 0.81 7.48 39.09 0.29 1.10 16 14 O -0.37 -4.57 11.65 -35.23 -0.41 -4.98 16 15 C 0.07 0.76 7.44 37.93 0.28 1.04 16 16 C -0.17 -2.00 6.60 -89.04 -0.59 -2.58 16 17 H 0.13 1.69 7.81 -51.93 -0.41 1.28 16 18 N -0.72 -16.04 4.51 -53.43 -0.24 -16.29 16 19 C -0.24 -5.92 7.75 -15.06 -0.12 -6.04 16 20 H 0.07 1.77 7.32 -52.49 -0.38 1.39 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -26.28 13.06 55.49 0.72 -25.55 16 23 Si 0.90 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.76 5.99 -51.92 -0.31 1.45 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.41 6.72 8.14 -40.82 -0.33 6.39 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.38 9.42 7.80 -40.82 -0.32 9.10 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -29.17 330.76 -8.04 -37.21 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -6.38 Total: 13.99 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.46 Total: -3.24 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.16 Total: -53.58 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.32 Total: -15.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.17 -8.04 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714099505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.084 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds