Wall clock time and date at job start Mon Mar 30 2020 01:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00408 * 2 1 4 4 C 1.52996 * 109.47420 * 124.99867 * 3 2 1 5 5 O 1.42897 * 109.47167 * 179.97438 * 4 3 2 6 6 C 1.42902 * 113.99740 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46686 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00490 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99677 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99823 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46877 * 180.02562 * 10 9 7 12 12 C 1.53950 * 113.74237 * 86.25986 * 11 10 9 13 13 N 1.47805 * 86.03824 * 90.88049 * 12 11 10 14 14 C 1.36942 * 134.45487 * 204.64668 * 13 12 11 15 15 H 1.08002 * 119.99602 * 179.86453 * 14 13 12 16 16 C 1.38807 * 120.00184 * 359.86555 * 14 13 12 17 17 N 1.31617 * 119.99858 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00250 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46605 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47103 * 119.99755 * 18 16 14 21 21 H 1.48496 * 109.47077 * 240.00020 * 18 16 14 22 22 C 1.47582 * 91.05413 * 24.54887 * 13 12 11 23 23 H 1.07996 * 119.99695 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00422 * 180.02562 * 1 2 3 25 25 H 1.08006 * 119.99599 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46839 * 4.99478 * 3 2 1 27 27 H 1.09002 * 109.46830 * 244.99985 * 3 2 1 28 28 H 1.08997 * 109.47002 * 59.99722 * 4 3 2 29 29 H 1.09003 * 109.46700 * 299.99978 * 4 3 2 30 30 H 1.09002 * 109.47081 * 60.00442 * 6 5 4 31 31 H 1.08997 * 109.47490 * 300.00123 * 6 5 4 32 32 H 0.97000 * 120.00410 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.47568 * 60.00247 * 10 9 7 34 34 H 1.08998 * 109.47248 * 299.99470 * 10 9 7 35 35 H 1.09002 * 112.94408 * 314.66403 * 11 10 9 36 36 H 1.08999 * 113.76704 * 205.14826 * 12 11 10 37 37 H 1.09002 * 113.76463 * 336.53620 * 12 11 10 38 38 H 0.97002 * 120.00155 * 180.02562 * 17 16 14 39 39 H 1.08999 * 113.77186 * 221.15323 * 22 13 12 40 40 H 1.09004 * 113.76624 * 89.74800 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7501 2.5702 1.1812 6 6 4.6888 2.6994 2.2509 7 6 5.3818 4.0340 2.1526 8 8 5.0994 4.7993 1.2552 9 7 6.3156 4.3770 3.0620 10 6 6.9889 5.6746 2.9667 11 6 7.9950 5.8123 4.1112 12 6 9.3760 5.2081 3.7986 13 7 9.7351 6.5502 3.2942 14 6 10.6519 7.0225 2.3932 15 1 10.7159 8.0819 2.1930 16 6 11.4989 6.1398 1.7374 17 7 11.4205 4.8488 1.9811 18 14 12.7500 6.7841 0.5090 19 1 12.6359 8.2618 0.4153 20 1 14.1177 6.4202 0.9584 21 1 12.4903 6.1826 -0.8236 22 6 8.7078 7.1763 4.1490 23 1 -0.5399 0.9353 -0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3587 2.1315 0.0895 27 1 2.6214 1.4024 -0.9314 28 1 3.7399 0.5064 1.0921 29 1 2.4772 1.2356 2.1130 30 1 5.4277 1.9009 2.1842 31 1 4.1649 2.6309 3.2043 32 1 6.5418 3.7647 3.7795 33 1 6.2501 6.4732 3.0339 34 1 7.5124 5.7432 2.0132 35 1 7.5883 5.5028 5.0740 36 1 9.9349 4.9078 4.6848 37 1 9.3543 4.4387 3.0268 38 1 12.0127 4.2319 1.5231 39 1 8.1538 7.9754 3.6565 40 1 9.0702 7.4553 5.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732139902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:42 Heat of formation + Delta-G solvation = -11.506179 kcal Electronic energy + Delta-G solvation = -19748.647705 eV Core-core repulsion = 16566.019169 eV Total energy + Delta-G solvation = -3182.628536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.62594 -38.27335 -37.59053 -35.22639 -34.17588 -32.14446 -30.25529 -28.91207 -27.41877 -25.31303 -24.77185 -23.22251 -22.27378 -20.49593 -20.05865 -18.73257 -16.99903 -16.87122 -16.69152 -16.53449 -15.60610 -15.34909 -14.97720 -14.64500 -14.53834 -13.80622 -13.66001 -13.43724 -13.21473 -12.64228 -12.56425 -12.29629 -11.72956 -11.48653 -11.43212 -11.35686 -11.10686 -10.99806 -10.70586 -10.47180 -9.91337 -9.86450 -9.74291 -9.70112 -9.55082 -9.39966 -8.78444 -8.68413 -6.85901 -5.74697 -3.06412 1.89412 2.83844 2.94123 3.41515 3.46995 3.49335 3.95413 4.48487 4.64430 4.77395 4.80826 4.93554 5.01851 5.09424 5.14350 5.17068 5.21704 5.35435 5.38269 5.51693 5.61552 5.66642 5.76033 5.99027 6.14755 6.27844 6.33909 6.40658 6.52311 6.63869 6.67207 6.77894 6.94241 7.19474 7.31923 7.58043 7.76838 8.00541 8.47702 9.07212 9.73648 10.61761 11.42615 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.003080 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.262135 B = 9087.986472 C = 9710.187253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.046 3.954 7 C 0.510 3.490 8 O -0.523 6.523 9 N -0.721 5.721 10 C 0.150 3.850 11 C -0.155 4.155 12 C 0.165 3.835 13 N -0.612 5.612 14 C -0.221 4.221 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.127 3.873 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.398 0.602 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.252 0.748 39 H 0.046 0.954 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.945 -9.931 3.567 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.012 4.012 5 O -0.282 6.282 6 C -0.034 4.034 7 C 0.294 3.706 8 O -0.399 6.399 9 N -0.374 5.374 10 C 0.027 3.973 11 C -0.175 4.175 12 C 0.040 3.960 13 N -0.339 5.339 14 C -0.348 4.348 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.000 4.000 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.232 0.768 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.922 -9.221 2.515 20.311 hybrid contribution 1.084 -0.320 0.071 1.133 sum -16.837 -9.541 2.586 19.525 Atomic orbital electron populations 1.23905 0.95898 1.02032 1.00833 1.22822 0.96013 0.98041 1.00157 1.20647 0.97969 0.95822 0.98724 1.22478 0.94001 0.86305 0.98412 1.88005 1.54344 1.37238 1.48585 1.22210 0.93089 0.96466 0.91652 1.20129 0.80180 0.87996 0.82285 1.90730 1.63493 1.52345 1.33284 1.45899 1.40357 1.20711 1.30411 1.21078 0.93295 0.82751 1.00135 1.23451 0.96954 1.00654 0.96436 1.22357 0.86707 0.90581 0.96365 1.46062 1.40722 1.02968 1.44101 1.19077 1.09986 0.92434 1.13346 0.90229 1.24764 0.99807 0.95482 1.00469 1.69813 1.40840 1.00883 1.45415 0.86061 0.81016 0.77927 0.80875 1.20456 1.21822 1.21698 1.22522 0.89474 0.93692 0.94279 0.88396 0.88344 0.87151 0.90479 0.89812 0.92970 0.93114 0.90178 0.90471 0.76797 0.92218 0.89929 0.91527 0.95571 0.90679 0.93792 0.93606 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 14.32 29.01 0.42 -0.86 16 2 C -0.15 -1.12 9.52 -36.03 -0.34 -1.46 16 3 C -0.09 -0.85 6.03 -27.89 -0.17 -1.02 16 4 C 0.06 0.62 5.92 37.16 0.22 0.84 16 5 O -0.36 -4.97 9.88 -55.14 -0.54 -5.51 16 6 C 0.05 0.54 6.42 36.01 0.23 0.77 16 7 C 0.51 8.21 7.91 -10.98 -0.09 8.13 16 8 O -0.52 -11.08 16.50 -14.35 -0.24 -11.31 16 9 N -0.72 -10.63 5.56 -60.29 -0.33 -10.97 16 10 C 0.15 2.68 5.42 -4.04 -0.02 2.66 16 11 C -0.16 -2.73 3.99 -89.69 -0.36 -3.09 16 12 C 0.17 3.74 7.03 -2.84 -0.02 3.72 16 13 N -0.61 -15.58 3.59 -177.69 -0.64 -16.22 16 14 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 15 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 17 N -0.92 -27.46 11.39 55.49 0.63 -26.83 16 18 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 C 0.13 2.53 8.51 -2.96 -0.03 2.51 16 23 H 0.10 0.64 7.84 -52.49 -0.41 0.22 16 24 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 25 H 0.11 0.69 8.06 -52.48 -0.42 0.26 16 26 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 4.53 8.47 -40.82 -0.35 4.18 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.85 7.98 -51.93 -0.41 1.43 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.89 7.12 -51.93 -0.37 1.52 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -34.95 341.88 -7.97 -42.92 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.56 Total: -0.20 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.41 Total: 5.41 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.34 Total: -54.01 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.78 Total: -16.83 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.95 -7.97 -42.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732139902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.412 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds