Wall clock time and date at job start Mon Mar 30 2020 01:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00408 * 2 1 4 4 C 1.52996 * 109.47420 * 124.99867 * 3 2 1 5 5 O 1.42897 * 109.47167 * 179.97438 * 4 3 2 6 6 C 1.42902 * 113.99740 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46686 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00490 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99677 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99823 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46877 * 180.02562 * 10 9 7 12 12 C 1.53950 * 113.74237 * 86.25986 * 11 10 9 13 13 N 1.47805 * 86.03824 * 90.88049 * 12 11 10 14 14 C 1.36942 * 134.45487 * 204.64668 * 13 12 11 15 15 H 1.08002 * 119.99602 * 179.86453 * 14 13 12 16 16 C 1.38807 * 120.00184 * 359.86555 * 14 13 12 17 17 N 1.31617 * 119.99858 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00250 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46605 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47103 * 119.99755 * 18 16 14 21 21 H 1.48496 * 109.47077 * 240.00020 * 18 16 14 22 22 C 1.47582 * 91.05413 * 24.54887 * 13 12 11 23 23 H 1.07996 * 119.99695 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00422 * 180.02562 * 1 2 3 25 25 H 1.08006 * 119.99599 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46839 * 4.99478 * 3 2 1 27 27 H 1.09002 * 109.46830 * 244.99985 * 3 2 1 28 28 H 1.08997 * 109.47002 * 59.99722 * 4 3 2 29 29 H 1.09003 * 109.46700 * 299.99978 * 4 3 2 30 30 H 1.09002 * 109.47081 * 60.00442 * 6 5 4 31 31 H 1.08997 * 109.47490 * 300.00123 * 6 5 4 32 32 H 0.97000 * 120.00410 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.47568 * 60.00247 * 10 9 7 34 34 H 1.08998 * 109.47248 * 299.99470 * 10 9 7 35 35 H 1.09002 * 112.94408 * 314.66403 * 11 10 9 36 36 H 1.08999 * 113.76704 * 205.14826 * 12 11 10 37 37 H 1.09002 * 113.76463 * 336.53620 * 12 11 10 38 38 H 0.97002 * 120.00155 * 180.02562 * 17 16 14 39 39 H 1.08999 * 113.77186 * 221.15323 * 22 13 12 40 40 H 1.09004 * 113.76624 * 89.74800 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7501 2.5702 1.1812 6 6 4.6888 2.6994 2.2509 7 6 5.3818 4.0340 2.1526 8 8 5.0994 4.7993 1.2552 9 7 6.3156 4.3770 3.0620 10 6 6.9889 5.6746 2.9667 11 6 7.9950 5.8123 4.1112 12 6 9.3760 5.2081 3.7986 13 7 9.7351 6.5502 3.2942 14 6 10.6519 7.0225 2.3932 15 1 10.7159 8.0819 2.1930 16 6 11.4989 6.1398 1.7374 17 7 11.4205 4.8488 1.9811 18 14 12.7500 6.7841 0.5090 19 1 12.6359 8.2618 0.4153 20 1 14.1177 6.4202 0.9584 21 1 12.4903 6.1826 -0.8236 22 6 8.7078 7.1763 4.1490 23 1 -0.5399 0.9353 -0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3587 2.1315 0.0895 27 1 2.6214 1.4024 -0.9314 28 1 3.7399 0.5064 1.0921 29 1 2.4772 1.2356 2.1130 30 1 5.4277 1.9009 2.1842 31 1 4.1649 2.6309 3.2043 32 1 6.5418 3.7647 3.7795 33 1 6.2501 6.4732 3.0339 34 1 7.5124 5.7432 2.0132 35 1 7.5883 5.5028 5.0740 36 1 9.9349 4.9078 4.6848 37 1 9.3543 4.4387 3.0268 38 1 12.0127 4.2319 1.5231 39 1 8.1538 7.9754 3.6565 40 1 9.0702 7.4553 5.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732139902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:41 Heat of formation + Delta-G solvation = -35.847917 kcal Electronic energy + Delta-G solvation = -19749.703242 eV Core-core repulsion = 16566.019169 eV Total energy + Delta-G solvation = -3183.684073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.92335 -39.74733 -38.69535 -35.89219 -35.64077 -34.16946 -31.21923 -30.29879 -28.80841 -26.84475 -26.46884 -24.13896 -23.88587 -21.73394 -20.72978 -20.29255 -18.74905 -18.09663 -17.83976 -17.45646 -16.96782 -16.74072 -16.33763 -15.85254 -15.75152 -15.57051 -14.85303 -14.53670 -14.41139 -14.13918 -13.86601 -13.38712 -13.32817 -12.94860 -12.85498 -12.52494 -12.49938 -12.23572 -12.12499 -11.96960 -11.81797 -11.47789 -11.28908 -10.92854 -10.79761 -10.67258 -10.25679 -10.06465 -8.88335 -7.90451 -5.21425 1.34556 1.42830 1.44474 1.53837 1.60084 1.88699 2.47190 3.01535 3.31176 3.45946 3.69541 3.83684 3.99741 4.01912 4.17158 4.20472 4.29701 4.34000 4.47498 4.50992 4.53285 4.62987 4.79079 4.91230 4.91326 5.02606 5.04053 5.10265 5.11709 5.27063 5.41851 5.57598 5.65559 5.73807 5.86537 5.97730 6.11310 6.61818 6.94592 7.27992 7.62648 8.58334 9.26540 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.003080 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.262135 B = 9087.986472 C = 9710.187253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C -0.096 4.096 4 C 0.062 3.938 5 O -0.402 6.402 6 C 0.052 3.948 7 C 0.503 3.497 8 O -0.584 6.584 9 N -0.707 5.707 10 C 0.160 3.840 11 C -0.118 4.118 12 C 0.161 3.839 13 N -0.647 5.647 14 C -0.230 4.230 15 H 0.079 0.921 16 C -0.070 4.070 17 N -0.952 5.952 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.296 1.296 22 C 0.124 3.876 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.419 0.581 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.119 0.881 36 H 0.025 0.975 37 H 0.041 0.959 38 H 0.246 0.754 39 H 0.052 0.948 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.181 -10.716 5.257 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.178 4.178 3 C -0.133 4.133 4 C -0.014 4.014 5 O -0.322 6.322 6 C -0.027 4.027 7 C 0.290 3.710 8 O -0.463 6.463 9 N -0.361 5.361 10 C 0.036 3.964 11 C -0.137 4.137 12 C 0.036 3.964 13 N -0.374 5.374 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.263 4.263 17 N -0.601 5.601 18 Si 0.802 3.198 19 H -0.191 1.191 20 H -0.217 1.217 21 H -0.223 1.223 22 C -0.001 4.001 23 H 0.114 0.886 24 H 0.132 0.868 25 H 0.142 0.858 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.256 0.744 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.137 0.863 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.175 -10.016 4.266 22.050 hybrid contribution 1.399 -0.052 -0.428 1.464 sum -17.776 -10.068 3.838 20.786 Atomic orbital electron populations 1.24083 0.95820 1.02773 0.99680 1.22818 0.96215 0.97591 1.01155 1.20646 0.97831 0.96604 0.98213 1.22671 0.94216 0.85185 0.99301 1.87962 1.55115 1.39405 1.49704 1.22294 0.93650 0.93750 0.93020 1.21071 0.79705 0.89187 0.81077 1.90701 1.65435 1.54535 1.35663 1.45722 1.39511 1.19992 1.30856 1.20745 0.93264 0.84749 0.97679 1.23136 0.94250 0.98003 0.98324 1.22317 0.89861 0.89104 0.95094 1.46479 1.41011 1.05138 1.44780 1.19431 1.10047 0.92578 1.13779 0.90275 1.25556 1.02106 0.95869 1.02731 1.69982 1.41705 1.01762 1.46663 0.85084 0.78594 0.77933 0.78224 1.19116 1.21687 1.22316 1.22780 0.88123 0.94961 0.94272 0.88563 0.86753 0.85839 0.91474 0.91211 0.91485 0.91201 0.87699 0.86347 0.74413 0.91390 0.95313 0.86349 0.95688 0.94037 0.94458 0.92955 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 14.32 67.78 0.97 -1.23 16 2 C -0.16 -2.11 9.52 25.64 0.24 -1.86 16 3 C -0.10 -1.67 6.03 29.84 0.18 -1.49 16 4 C 0.06 1.07 5.92 71.98 0.43 1.50 16 5 O -0.40 -10.57 9.88 -129.94 -1.28 -11.85 16 6 C 0.05 1.09 6.42 71.24 0.46 1.54 16 7 C 0.50 15.80 7.91 87.66 0.69 16.50 16 8 O -0.58 -25.31 16.50 16.02 0.26 -25.05 16 9 N -0.71 -19.74 5.56 -463.05 -2.57 -22.31 16 10 C 0.16 5.60 5.42 86.38 0.47 6.06 16 11 C -0.12 -3.89 3.99 -10.13 -0.04 -3.93 16 12 C 0.16 7.27 7.03 86.44 0.61 7.88 16 13 N -0.65 -32.99 3.59 -716.10 -2.57 -35.55 16 14 C -0.23 -13.18 10.70 84.03 0.90 -12.28 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 16 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 17 N -0.95 -58.17 11.39 21.65 0.25 -57.93 16 18 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 22 C 0.12 4.70 8.51 86.49 0.74 5.44 16 23 H 0.10 1.14 7.84 -2.91 -0.02 1.12 16 24 H 0.11 0.98 8.06 -2.91 -0.02 0.95 16 25 H 0.12 1.29 8.06 -2.91 -0.02 1.26 16 26 H 0.07 1.27 7.79 -2.39 -0.02 1.25 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.42 8.24 8.47 -92.71 -0.79 7.46 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.03 1.33 7.98 -2.39 -0.02 1.31 16 35 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.04 2.14 7.12 -2.39 -0.02 2.12 16 38 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -79.66 341.88 2.45 -77.22 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.22 Total: 11.65 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 6.11 Total: 14.51 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -4.89 Total: -115.79 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.02 Total: -36.90 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -79.66 2.45 -77.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732139902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.369 kcal (2) G-P(sol) polarization free energy of solvation -79.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds