Wall clock time and date at job start Mon Mar 30 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 H 1.08995 * 115.54994 * 29.33256 * 3 2 1 5 5 C 1.52999 * 117.49717 * 243.62002 * 3 2 1 6 6 C 1.52998 * 60.00194 * 252.51024 * 5 3 2 7 7 H 1.08998 * 117.49846 * 107.48554 * 6 5 3 8 8 C 1.50702 * 117.50194 * 252.51250 * 6 5 3 9 9 O 1.21278 * 119.99729 * 68.61947 * 8 6 5 10 10 N 1.34777 * 119.99727 * 248.62263 * 8 6 5 11 11 C 1.46505 * 119.99464 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46710 * 180.02562 * 11 10 8 13 13 O 1.42904 * 112.94855 * 53.40797 * 12 11 10 14 14 C 1.53951 * 113.74411 * 281.67384 * 12 11 10 15 15 N 1.47581 * 86.11889 * 222.05162 * 14 12 11 16 16 C 1.36940 * 134.48804 * 204.64360 * 15 14 12 17 17 H 1.07996 * 119.99157 * 173.47664 * 16 15 14 18 18 C 1.38803 * 120.00022 * 353.47607 * 16 15 14 19 19 N 1.31613 * 120.00250 * 5.06965 * 18 16 15 20 20 Si 1.86801 * 119.99875 * 185.06803 * 18 16 15 21 21 H 1.48504 * 109.47341 * 94.98549 * 20 18 16 22 22 H 1.48493 * 109.47396 * 214.98828 * 20 18 16 23 23 H 1.48501 * 109.46993 * 334.98816 * 20 18 16 24 24 C 1.47578 * 91.01631 * 24.63895 * 15 14 12 25 25 H 1.08994 * 109.47409 * 60.00006 * 1 2 3 26 26 H 1.09003 * 109.47551 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47380 * 300.00249 * 1 2 3 28 28 H 1.08994 * 109.47535 * 239.99768 * 2 1 3 29 29 H 1.09003 * 109.47226 * 119.99837 * 2 1 3 30 30 H 1.08997 * 117.49646 * 145.02039 * 5 3 2 31 31 H 1.09002 * 117.49908 * 0.02562 * 5 3 2 32 32 H 0.96995 * 120.00455 * 359.97438 * 10 8 6 33 33 H 1.08997 * 109.46949 * 299.99855 * 11 10 8 34 34 H 1.08995 * 109.46888 * 60.00131 * 11 10 8 35 35 H 0.96699 * 113.99518 * 309.66792 * 13 12 11 36 36 H 1.09001 * 113.76320 * 336.35476 * 14 12 11 37 37 H 1.09003 * 113.77084 * 107.74493 * 14 12 11 38 38 H 0.97006 * 120.00229 * 180.02562 * 19 18 16 39 39 H 1.09000 * 113.77210 * 221.06302 * 24 15 14 40 40 H 1.08998 * 113.77097 * 89.65972 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7720 0.1961 8 6 4.0228 2.8621 0.8914 9 8 3.2157 3.6167 1.3914 10 7 5.3424 3.1002 1.0272 11 6 5.8018 4.2711 1.7783 12 6 7.3313 4.3079 1.7800 13 8 7.8918 4.2370 0.4674 14 6 7.9737 3.3337 2.7842 15 7 8.9078 4.4320 3.0990 16 6 10.1780 4.4956 3.6068 17 1 10.6962 5.4423 3.6479 18 6 10.7993 3.3435 4.0686 19 7 10.2090 2.1757 3.9275 20 14 12.4736 3.4505 4.8902 21 1 12.2985 3.5213 6.3632 22 1 13.2727 2.2478 4.5439 23 1 13.1804 4.6676 4.4167 24 6 7.9234 5.4341 2.6467 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7212 2.9427 -1.5343 31 1 3.0092 1.1859 -2.0159 32 1 5.9879 2.4965 0.6275 33 1 5.4175 5.1771 1.3098 34 1 5.4383 4.2103 2.8041 35 1 7.5438 3.5125 -0.0702 36 1 7.3195 3.0623 3.6127 37 1 8.4503 2.4719 2.3169 38 1 10.6430 1.3706 4.2505 39 1 8.3597 6.2494 2.0696 40 1 7.2544 5.7797 3.4349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733507000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:17 Heat of formation + Delta-G solvation = -12.469141 kcal Electronic energy + Delta-G solvation = -20370.517381 eV Core-core repulsion = 17187.847087 eV Total energy + Delta-G solvation = -3182.670293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.13398 -38.85507 -37.11617 -34.88382 -33.96734 -32.29391 -31.97904 -28.73903 -26.37573 -25.03407 -24.28354 -23.65933 -21.78759 -20.74191 -20.16517 -19.32421 -17.71286 -16.74000 -16.21148 -15.72154 -15.23128 -15.02644 -14.70254 -14.59694 -14.12342 -13.92733 -13.51907 -13.19869 -12.79097 -12.63925 -12.59829 -12.34675 -12.26334 -11.77232 -11.56981 -11.26729 -11.08565 -10.96368 -10.75862 -10.49179 -10.42734 -10.23631 -10.00544 -9.69652 -9.50082 -9.22768 -8.92116 -8.82589 -6.90082 -5.79957 -3.10747 2.50509 3.13102 3.39066 3.44100 3.46107 3.66438 4.40789 4.42907 4.50831 4.56760 4.62912 4.91371 4.97101 5.06735 5.10010 5.19527 5.21706 5.28335 5.43346 5.54951 5.57911 5.69151 5.75267 5.76156 5.84849 5.89842 6.04331 6.15694 6.29770 6.42571 6.53847 6.56586 7.01393 7.12479 7.49741 7.51984 7.94353 8.10649 8.27313 9.02212 9.68402 10.55453 11.37988 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033848 B = 0.003474 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.017764 B = 8057.449122 C = 8459.210642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.118 4.118 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.191 4.191 7 H 0.125 0.875 8 C 0.543 3.457 9 O -0.545 6.545 10 N -0.720 5.720 11 C 0.103 3.897 12 C 0.063 3.937 13 O -0.527 6.527 14 C 0.147 3.853 15 N -0.602 5.602 16 C -0.219 4.219 17 H 0.082 0.918 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.135 3.865 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.362 0.638 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.055 0.945 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.905 -3.990 -10.285 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.137 4.137 4 H 0.135 0.865 5 C -0.186 4.186 6 C -0.212 4.212 7 H 0.142 0.858 8 C 0.329 3.671 9 O -0.422 6.422 10 N -0.371 5.371 11 C -0.022 4.022 12 C 0.020 3.980 13 O -0.330 6.330 14 C 0.021 3.979 15 N -0.328 5.328 16 C -0.347 4.347 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.009 3.991 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.208 0.792 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.805 -3.024 -9.553 18.714 hybrid contribution 1.038 -0.822 0.277 1.353 sum -14.767 -3.846 -9.276 17.858 Atomic orbital electron populations 1.21738 0.95239 1.01586 1.02122 1.21161 0.96224 0.93683 1.02236 1.22469 0.91468 0.98675 1.01068 0.86468 1.23096 1.02105 1.03113 0.90312 1.22325 0.97774 0.99115 1.01995 0.85758 1.19627 0.82186 0.85481 0.79796 1.90682 1.53940 1.48814 1.48803 1.45868 1.06942 1.28691 1.55640 1.22048 0.95202 0.87813 0.97112 1.23777 0.87630 1.02045 0.84532 1.86616 1.67737 1.54220 1.24444 1.22835 0.89381 0.93221 0.92417 1.45651 1.10639 1.01092 1.75439 1.19008 0.87931 0.94675 1.33071 0.90067 1.24802 0.99030 0.95330 1.01262 1.69817 1.38808 0.97200 1.51010 0.86092 0.83210 0.77051 0.79401 1.21618 1.21702 1.20511 1.22563 0.90888 0.92863 0.92803 0.92576 0.92662 0.92485 0.91649 0.91308 0.88335 0.87821 0.76589 0.91217 0.90303 0.79220 0.94657 0.90826 0.93678 0.92681 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.87 37.15 0.37 -0.67 16 2 C -0.10 -0.73 6.22 -26.73 -0.17 -0.89 16 3 C -0.12 -1.13 5.25 -90.62 -0.48 -1.60 16 4 H 0.12 1.32 7.60 -51.93 -0.39 0.93 16 5 C -0.15 -1.27 9.88 -26.73 -0.26 -1.54 16 6 C -0.19 -1.95 5.91 -91.77 -0.54 -2.49 16 7 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 8 C 0.54 7.51 7.61 -10.98 -0.08 7.42 16 9 O -0.54 -9.53 16.26 5.56 0.09 -9.44 16 10 N -0.72 -9.49 5.34 -60.30 -0.32 -9.81 16 11 C 0.10 1.60 5.28 -4.04 -0.02 1.58 16 12 C 0.06 1.16 1.52 -89.69 -0.14 1.02 16 13 O -0.53 -9.56 13.51 -35.23 -0.48 -10.03 16 14 C 0.15 3.38 6.83 -2.97 -0.02 3.36 16 15 N -0.60 -15.65 3.70 -177.77 -0.66 -16.30 16 16 C -0.22 -6.26 10.69 -15.06 -0.16 -6.42 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 18 C -0.01 -0.22 5.50 -17.44 -0.10 -0.32 16 19 N -0.92 -27.27 11.51 55.49 0.64 -26.63 16 20 Si 0.91 22.31 29.56 -169.99 -5.02 17.29 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.14 2.82 8.34 -2.97 -0.02 2.80 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.68 8.03 -51.93 -0.42 0.26 16 32 H 0.40 4.41 7.31 -40.82 -0.30 4.11 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 35 H 0.36 4.87 7.61 45.56 0.35 5.22 16 36 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 37 H 0.07 1.85 7.35 -51.93 -0.38 1.47 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -34.17 335.30 -8.06 -42.23 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.74 Total: 5.41 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.62 Total: 2.25 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.34 Total: -52.74 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.39 Total: -19.48 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.17 -8.06 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733507000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.758 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds