Wall clock time and date at job start Mon Mar 30 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 H 1.08995 * 115.54994 * 29.33256 * 3 2 1 5 5 C 1.52999 * 117.49717 * 243.62002 * 3 2 1 6 6 C 1.52998 * 60.00194 * 252.51024 * 5 3 2 7 7 H 1.08998 * 117.49846 * 107.48554 * 6 5 3 8 8 C 1.50702 * 117.50194 * 252.51250 * 6 5 3 9 9 O 1.21278 * 119.99729 * 68.61947 * 8 6 5 10 10 N 1.34777 * 119.99727 * 248.62263 * 8 6 5 11 11 C 1.46505 * 119.99464 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46710 * 180.02562 * 11 10 8 13 13 O 1.42904 * 112.94855 * 53.40797 * 12 11 10 14 14 C 1.53951 * 113.74411 * 281.67384 * 12 11 10 15 15 N 1.47581 * 86.11889 * 222.05162 * 14 12 11 16 16 C 1.36940 * 134.48804 * 204.64360 * 15 14 12 17 17 H 1.07996 * 119.99157 * 173.47664 * 16 15 14 18 18 C 1.38803 * 120.00022 * 353.47607 * 16 15 14 19 19 N 1.31613 * 120.00250 * 5.06965 * 18 16 15 20 20 Si 1.86801 * 119.99875 * 185.06803 * 18 16 15 21 21 H 1.48504 * 109.47341 * 94.98549 * 20 18 16 22 22 H 1.48493 * 109.47396 * 214.98828 * 20 18 16 23 23 H 1.48501 * 109.46993 * 334.98816 * 20 18 16 24 24 C 1.47578 * 91.01631 * 24.63895 * 15 14 12 25 25 H 1.08994 * 109.47409 * 60.00006 * 1 2 3 26 26 H 1.09003 * 109.47551 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47380 * 300.00249 * 1 2 3 28 28 H 1.08994 * 109.47535 * 239.99768 * 2 1 3 29 29 H 1.09003 * 109.47226 * 119.99837 * 2 1 3 30 30 H 1.08997 * 117.49646 * 145.02039 * 5 3 2 31 31 H 1.09002 * 117.49908 * 0.02562 * 5 3 2 32 32 H 0.96995 * 120.00455 * 359.97438 * 10 8 6 33 33 H 1.08997 * 109.46949 * 299.99855 * 11 10 8 34 34 H 1.08995 * 109.46888 * 60.00131 * 11 10 8 35 35 H 0.96699 * 113.99518 * 309.66792 * 13 12 11 36 36 H 1.09001 * 113.76320 * 336.35476 * 14 12 11 37 37 H 1.09003 * 113.77084 * 107.74493 * 14 12 11 38 38 H 0.97006 * 120.00229 * 180.02562 * 19 18 16 39 39 H 1.09000 * 113.77210 * 221.06302 * 24 15 14 40 40 H 1.08998 * 113.77097 * 89.65972 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7720 0.1961 8 6 4.0228 2.8621 0.8914 9 8 3.2157 3.6167 1.3914 10 7 5.3424 3.1002 1.0272 11 6 5.8018 4.2711 1.7783 12 6 7.3313 4.3079 1.7800 13 8 7.8918 4.2370 0.4674 14 6 7.9737 3.3337 2.7842 15 7 8.9078 4.4320 3.0990 16 6 10.1780 4.4956 3.6068 17 1 10.6962 5.4423 3.6479 18 6 10.7993 3.3435 4.0686 19 7 10.2090 2.1757 3.9275 20 14 12.4736 3.4505 4.8902 21 1 12.2985 3.5213 6.3632 22 1 13.2727 2.2478 4.5439 23 1 13.1804 4.6676 4.4167 24 6 7.9234 5.4341 2.6467 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7212 2.9427 -1.5343 31 1 3.0092 1.1859 -2.0159 32 1 5.9879 2.4965 0.6275 33 1 5.4175 5.1771 1.3098 34 1 5.4383 4.2103 2.8041 35 1 7.5438 3.5125 -0.0702 36 1 7.3195 3.0623 3.6127 37 1 8.4503 2.4719 2.3169 38 1 10.6430 1.3706 4.2505 39 1 8.3597 6.2494 2.0696 40 1 7.2544 5.7797 3.4349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733507000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:17 Heat of formation + Delta-G solvation = -37.929081 kcal Electronic energy + Delta-G solvation = -20371.621407 eV Core-core repulsion = 17187.847087 eV Total energy + Delta-G solvation = -3183.774319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30977 -40.32461 -38.01931 -36.49377 -35.26334 -34.03481 -32.89760 -30.37127 -28.05193 -26.78552 -25.24418 -24.53683 -23.43262 -21.55764 -21.20036 -20.87958 -18.99926 -18.53310 -17.46896 -17.23464 -16.60348 -16.32790 -15.88238 -15.71342 -15.38078 -15.27692 -14.96920 -14.60210 -14.39910 -13.92301 -13.52416 -13.48848 -13.28766 -12.98253 -12.94785 -12.86981 -12.58045 -12.23059 -12.15859 -11.89810 -11.79464 -11.46459 -11.21732 -11.02881 -10.97591 -10.76539 -10.72802 -10.16357 -8.94751 -7.94419 -5.26427 1.44561 1.46427 1.47090 1.55354 2.05495 2.45131 2.87648 3.03682 3.24270 3.33715 3.53200 3.69557 3.79243 3.88155 3.89554 4.22241 4.31048 4.35314 4.51620 4.59279 4.66702 4.73296 4.77025 4.81666 4.93399 4.96781 5.02594 5.15892 5.18489 5.25394 5.27570 5.30908 5.33650 5.47500 5.52712 5.89461 6.45878 6.81250 6.89408 7.18868 7.56792 8.50955 9.22988 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033848 B = 0.003474 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.017764 B = 8057.449122 C = 8459.210642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.123 4.123 4 H 0.093 0.907 5 C -0.131 4.131 6 C -0.198 4.198 7 H 0.147 0.853 8 C 0.540 3.460 9 O -0.586 6.586 10 N -0.713 5.713 11 C 0.118 3.882 12 C 0.099 3.901 13 O -0.539 6.539 14 C 0.147 3.853 15 N -0.636 5.636 16 C -0.236 4.236 17 H 0.082 0.918 18 C -0.065 4.065 19 N -0.950 5.950 20 Si 0.979 3.021 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.128 3.872 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.411 0.589 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.384 0.616 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.249 0.751 39 H 0.058 0.942 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.237 -4.393 -11.582 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.142 4.142 4 H 0.111 0.889 5 C -0.168 4.168 6 C -0.219 4.219 7 H 0.164 0.836 8 C 0.328 3.672 9 O -0.467 6.467 10 N -0.365 5.365 11 C -0.007 4.007 12 C 0.057 3.943 13 O -0.346 6.346 14 C 0.021 3.979 15 N -0.362 5.362 16 C -0.364 4.364 17 H 0.100 0.900 18 C -0.258 4.258 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.193 1.193 24 C 0.003 3.997 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.248 0.752 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.149 -3.426 -10.886 19.775 hybrid contribution 1.096 -0.655 0.646 1.431 sum -15.053 -4.081 -10.241 18.658 Atomic orbital electron populations 1.21743 0.94936 1.02222 1.01821 1.21167 0.96481 0.92310 1.02940 1.22488 0.90623 0.99433 1.01681 0.88857 1.23206 0.99997 1.03461 0.90129 1.22356 0.98496 0.98130 1.02902 0.83580 1.20261 0.81657 0.85985 0.79279 1.90666 1.54884 1.50517 1.50593 1.45777 1.07344 1.28178 1.55184 1.21712 0.92607 0.89219 0.97211 1.23133 0.89008 0.98486 0.83721 1.86568 1.68435 1.55438 1.24147 1.22773 0.89053 0.92730 0.93325 1.46035 1.10951 1.03662 1.75581 1.19379 0.89501 0.94798 1.32752 0.90031 1.25636 1.02833 0.95086 1.02281 1.69986 1.40275 0.97552 1.52062 0.85052 0.78981 0.77138 0.78122 1.21402 1.21858 1.19322 1.22799 0.90247 0.92961 0.93695 0.92225 0.91530 0.93511 0.89855 0.91624 0.89119 0.84956 0.75179 0.90389 0.91198 0.76715 0.95675 0.93485 0.94171 0.92334 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.87 71.98 0.71 -1.14 16 2 C -0.09 -1.20 6.22 30.59 0.19 -1.01 16 3 C -0.12 -2.18 5.25 -10.79 -0.06 -2.23 16 4 H 0.09 2.12 7.60 -2.39 -0.02 2.10 16 5 C -0.13 -1.90 9.88 30.59 0.30 -1.60 16 6 C -0.20 -3.65 5.91 -11.54 -0.07 -3.72 16 7 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 8 C 0.54 14.35 7.61 87.66 0.67 15.02 16 9 O -0.59 -20.41 16.26 -3.02 -0.05 -20.45 16 10 N -0.71 -17.78 5.34 -463.07 -2.47 -20.25 16 11 C 0.12 3.52 5.28 86.38 0.46 3.97 16 12 C 0.10 3.56 1.52 -10.13 -0.02 3.55 16 13 O -0.54 -18.72 13.51 -148.98 -2.01 -20.73 16 14 C 0.15 6.81 6.83 86.48 0.59 7.40 16 15 N -0.64 -33.22 3.70 -720.16 -2.66 -35.88 16 16 C -0.24 -13.56 10.69 84.03 0.90 -12.67 16 17 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 18 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 19 N -0.95 -57.16 11.51 21.65 0.25 -56.91 16 20 Si 0.98 46.16 29.56 68.60 2.03 48.19 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.13 5.26 8.34 86.48 0.72 5.98 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.08 0.81 7.87 -2.39 -0.02 0.79 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.13 1.20 8.03 -2.39 -0.02 1.18 16 32 H 0.41 8.32 7.31 -92.71 -0.68 7.65 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 35 H 0.38 9.51 7.61 -74.06 -0.56 8.95 16 36 H 0.03 1.21 8.03 -2.39 -0.02 1.20 16 37 H 0.05 2.41 7.35 -2.39 -0.02 2.39 16 38 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 Total: -1.00 -74.22 335.30 -0.25 -74.47 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.20 Total: 21.31 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.86 Total: 10.26 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.88 Total: -113.04 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -2.06 Total: -41.19 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -74.22 -0.25 -74.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733507000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.542 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds