Wall clock time and date at job start Mon Mar 30 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47097 * 2 1 4 4 H 1.08994 * 109.47725 * 54.99614 * 3 2 1 5 5 C 1.52998 * 109.47057 * 174.99777 * 3 2 1 6 6 N 1.46506 * 109.47237 * 174.99470 * 5 3 2 7 7 C 1.34773 * 119.99969 * 179.72043 * 6 5 3 8 8 O 1.21281 * 120.00220 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.52997 * 119.80659 * 250.98749 * 9 7 6 11 11 C 1.52996 * 60.65356 * 247.68534 * 10 9 7 12 12 H 1.09001 * 120.24553 * 112.13233 * 11 10 9 13 13 C 1.54484 * 118.06995 * 269.59637 * 11 10 9 14 14 O 1.44426 * 104.80371 * 86.82411 * 13 11 10 15 15 C 1.43868 * 105.56526 * 319.94382 * 14 13 11 16 16 N 1.46510 * 109.46806 * 294.99389 * 3 2 1 17 17 C 1.36928 * 119.99804 * 85.00547 * 16 3 2 18 18 H 1.08002 * 120.00107 * 359.97438 * 17 16 3 19 19 C 1.38809 * 119.99946 * 179.97438 * 17 16 3 20 20 N 1.31613 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46983 * 120.00305 * 21 19 17 24 24 H 1.48503 * 109.47243 * 239.99973 * 21 19 17 25 25 H 1.09000 * 109.47586 * 300.00858 * 1 2 3 26 26 H 1.09006 * 109.46974 * 60.00744 * 1 2 3 27 27 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47128 * 239.99330 * 2 1 3 29 29 H 1.09006 * 109.46974 * 119.99256 * 2 1 3 30 30 H 1.09001 * 109.47671 * 54.99810 * 5 3 2 31 31 H 1.08998 * 109.47454 * 294.99808 * 5 3 2 32 32 H 0.97005 * 119.99811 * 0.02562 * 6 5 3 33 33 H 1.08996 * 117.43528 * 355.36132 * 10 9 7 34 34 H 1.09005 * 117.43521 * 140.01235 * 10 9 7 35 35 H 1.08995 * 110.37200 * 205.65389 * 13 11 10 36 36 H 1.09001 * 110.36702 * 327.99236 * 13 11 10 37 37 H 1.09001 * 109.56007 * 281.16757 * 15 14 13 38 38 H 1.09004 * 110.92116 * 159.01991 * 15 14 13 39 39 H 0.96996 * 119.99620 * 265.00312 * 16 3 2 40 40 H 0.96999 * 120.00535 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0631 2.8168 0.0059 7 6 5.3852 3.0636 0.0919 8 8 6.1626 2.1495 0.2681 9 6 5.8978 4.4755 -0.0308 10 6 6.6697 4.8982 -1.2823 11 6 7.4011 4.8205 0.0592 12 1 8.1651 4.0609 0.2248 13 6 7.4429 6.0897 0.9390 14 8 6.2281 6.0385 1.7185 15 6 5.2103 5.5688 0.8167 16 7 1.6525 2.0974 -1.2520 17 6 0.4158 2.6734 -1.3690 18 1 -0.2742 2.6446 -0.5386 19 6 0.0488 3.2944 -2.5550 20 7 0.8897 3.3300 -3.5668 21 14 -1.6386 4.0795 -2.7150 22 1 -2.3888 3.9036 -1.4455 23 1 -1.4852 5.5282 -3.0033 24 1 -2.3836 3.4305 -3.8236 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.9955 0.8311 -0.6658 31 1 3.8499 1.0377 1.0961 32 1 3.4410 3.5484 -0.1310 33 1 6.8909 4.1272 -2.0203 34 1 6.4664 5.8899 -1.6867 35 1 8.3145 6.0695 1.5931 36 1 7.4561 6.9834 0.3152 37 1 4.8790 6.3898 0.1808 38 1 4.3673 5.1492 1.3658 39 1 2.2720 2.1230 -1.9978 40 1 0.6332 3.7635 -4.3957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753473196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:59 Heat of formation + Delta-G solvation = -44.763350 kcal Electronic energy + Delta-G solvation = -21002.335465 eV Core-core repulsion = 17818.264789 eV Total energy + Delta-G solvation = -3184.070675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81663 -38.67722 -36.70000 -34.67513 -33.73368 -32.40157 -29.86984 -29.20397 -27.75350 -25.51385 -24.21521 -23.12315 -21.92574 -21.08827 -20.13689 -19.25322 -17.64191 -17.08092 -16.06855 -15.59116 -15.43673 -15.27349 -14.74928 -14.45443 -14.08808 -13.97416 -13.28965 -13.23094 -13.03285 -12.85567 -12.53527 -12.23919 -11.91777 -11.46545 -11.36171 -11.00812 -10.92738 -10.79058 -10.76168 -10.47916 -10.32987 -10.21722 -10.03901 -9.80864 -9.57693 -9.44679 -8.99458 -8.67443 -7.07112 -5.85159 -3.14362 2.68849 3.27403 3.36774 3.43675 3.45343 3.51962 3.89694 4.29333 4.40591 4.51092 4.80415 4.90101 4.94049 5.20240 5.37122 5.40947 5.49030 5.53504 5.54502 5.59295 5.65271 5.76140 5.89128 5.93721 5.94220 5.98281 6.13672 6.39968 6.51866 6.55135 6.56974 6.58487 6.85969 6.99591 7.21733 7.63799 7.89395 8.32060 8.51346 9.44302 9.98967 10.35092 11.36777 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.005323 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.223787 B = 5258.903242 C = 6172.248578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.704 5.704 7 C 0.558 3.442 8 O -0.552 6.552 9 C -0.204 4.204 10 C -0.104 4.104 11 C -0.163 4.163 12 H 0.130 0.870 13 C 0.073 3.927 14 O -0.370 6.370 15 C 0.086 3.914 16 N -0.721 5.721 17 C -0.237 4.237 18 H 0.074 0.926 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.535 3.223 6.968 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.355 5.355 7 C 0.343 3.657 8 O -0.431 6.431 9 C -0.208 4.208 10 C -0.141 4.141 11 C -0.182 4.182 12 H 0.148 0.852 13 C -0.003 4.003 14 O -0.289 6.289 15 C 0.009 3.991 16 N -0.364 5.364 17 C -0.368 4.368 18 H 0.092 0.908 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.850 2.694 7.364 12.590 hybrid contribution -1.118 0.518 -0.799 1.469 sum 8.731 3.212 6.565 11.386 Atomic orbital electron populations 1.21767 0.95685 0.99649 1.03252 1.22066 0.96997 0.98351 1.00037 1.20570 0.89822 0.92881 0.91472 0.92793 1.21705 0.95713 0.82444 1.01130 1.45883 1.06798 1.10904 1.71901 1.18978 0.82590 0.87965 0.76192 1.90663 1.56439 1.45722 1.50253 1.23291 0.96206 0.95765 1.05506 1.23133 0.97564 1.03445 0.90003 1.24325 0.93982 1.00252 0.99659 0.85216 1.22970 0.88753 0.95068 0.93549 1.89064 1.18225 1.86903 1.34710 1.22744 0.91185 0.93825 0.91307 1.42460 1.16792 1.65849 1.11252 1.19252 0.91916 1.27579 0.98020 0.90829 1.24726 0.98041 1.01580 0.96380 1.69666 1.35106 1.48982 1.03987 0.86199 0.84126 0.78868 0.77478 1.20540 1.21928 1.21937 0.94107 0.89671 0.94862 0.92521 0.93836 0.91801 0.91813 0.75202 0.87152 0.87587 0.88345 0.91599 0.91017 0.88073 0.78101 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.28 5.61 -26.73 -0.15 -2.43 16 3 C 0.16 2.97 2.59 -67.93 -0.18 2.79 16 4 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.11 1.95 5.23 -4.04 -0.02 1.92 16 6 N -0.70 -11.78 5.28 -60.29 -0.32 -12.10 16 7 C 0.56 9.50 7.42 -10.98 -0.08 9.42 16 8 O -0.55 -11.02 16.85 5.56 0.09 -10.93 16 9 C -0.20 -2.83 2.84 -154.09 -0.44 -3.27 16 10 C -0.10 -1.21 9.89 -26.73 -0.26 -1.48 16 11 C -0.16 -1.93 6.90 -89.05 -0.61 -2.55 16 12 H 0.13 1.58 8.14 -51.93 -0.42 1.15 16 13 C 0.07 0.76 7.45 37.94 0.28 1.04 16 14 O -0.37 -4.96 11.62 -35.23 -0.41 -5.37 16 15 C 0.09 1.10 7.09 37.93 0.27 1.37 16 16 N -0.72 -16.12 4.51 -53.42 -0.24 -16.36 16 17 C -0.24 -5.89 7.75 -15.06 -0.12 -6.01 16 18 H 0.07 1.80 7.32 -52.49 -0.38 1.42 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -26.32 13.06 55.49 0.72 -25.59 16 21 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.41 6.91 7.93 -40.82 -0.32 6.59 16 33 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.28 7.87 -51.93 -0.41 0.88 16 39 H 0.38 9.45 7.80 -40.82 -0.32 9.14 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -29.65 330.64 -7.63 -37.28 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -6.37 Total: 13.74 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.06 Total: -1.81 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.17 Total: -54.05 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.32 Total: -16.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.65 -7.63 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753473196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.483 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds