Wall clock time and date at job start Mon Mar 30 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47097 * 2 1 4 4 H 1.08994 * 109.47725 * 54.99614 * 3 2 1 5 5 C 1.52998 * 109.47057 * 174.99777 * 3 2 1 6 6 N 1.46506 * 109.47237 * 174.99470 * 5 3 2 7 7 C 1.34773 * 119.99969 * 179.72043 * 6 5 3 8 8 O 1.21281 * 120.00220 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.52997 * 119.80659 * 250.98749 * 9 7 6 11 11 C 1.52996 * 60.65356 * 247.68534 * 10 9 7 12 12 H 1.09001 * 120.24553 * 112.13233 * 11 10 9 13 13 C 1.54484 * 118.06995 * 269.59637 * 11 10 9 14 14 O 1.44426 * 104.80371 * 86.82411 * 13 11 10 15 15 C 1.43868 * 105.56526 * 319.94382 * 14 13 11 16 16 N 1.46510 * 109.46806 * 294.99389 * 3 2 1 17 17 C 1.36928 * 119.99804 * 85.00547 * 16 3 2 18 18 H 1.08002 * 120.00107 * 359.97438 * 17 16 3 19 19 C 1.38809 * 119.99946 * 179.97438 * 17 16 3 20 20 N 1.31613 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46983 * 120.00305 * 21 19 17 24 24 H 1.48503 * 109.47243 * 239.99973 * 21 19 17 25 25 H 1.09000 * 109.47586 * 300.00858 * 1 2 3 26 26 H 1.09006 * 109.46974 * 60.00744 * 1 2 3 27 27 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47128 * 239.99330 * 2 1 3 29 29 H 1.09006 * 109.46974 * 119.99256 * 2 1 3 30 30 H 1.09001 * 109.47671 * 54.99810 * 5 3 2 31 31 H 1.08998 * 109.47454 * 294.99808 * 5 3 2 32 32 H 0.97005 * 119.99811 * 0.02562 * 6 5 3 33 33 H 1.08996 * 117.43528 * 355.36132 * 10 9 7 34 34 H 1.09005 * 117.43521 * 140.01235 * 10 9 7 35 35 H 1.08995 * 110.37200 * 205.65389 * 13 11 10 36 36 H 1.09001 * 110.36702 * 327.99236 * 13 11 10 37 37 H 1.09001 * 109.56007 * 281.16757 * 15 14 13 38 38 H 1.09004 * 110.92116 * 159.01991 * 15 14 13 39 39 H 0.96996 * 119.99620 * 265.00312 * 16 3 2 40 40 H 0.96999 * 120.00535 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0631 2.8168 0.0059 7 6 5.3852 3.0636 0.0919 8 8 6.1626 2.1495 0.2681 9 6 5.8978 4.4755 -0.0308 10 6 6.6697 4.8982 -1.2823 11 6 7.4011 4.8205 0.0592 12 1 8.1651 4.0609 0.2248 13 6 7.4429 6.0897 0.9390 14 8 6.2281 6.0385 1.7185 15 6 5.2103 5.5688 0.8167 16 7 1.6525 2.0974 -1.2520 17 6 0.4158 2.6734 -1.3690 18 1 -0.2742 2.6446 -0.5386 19 6 0.0488 3.2944 -2.5550 20 7 0.8897 3.3300 -3.5668 21 14 -1.6386 4.0795 -2.7150 22 1 -2.3888 3.9036 -1.4455 23 1 -1.4852 5.5282 -3.0033 24 1 -2.3836 3.4305 -3.8236 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.9955 0.8311 -0.6658 31 1 3.8499 1.0377 1.0961 32 1 3.4410 3.5484 -0.1310 33 1 6.8909 4.1272 -2.0203 34 1 6.4664 5.8899 -1.6867 35 1 8.3145 6.0695 1.5931 36 1 7.4561 6.9834 0.3152 37 1 4.8790 6.3898 0.1808 38 1 4.3673 5.1492 1.3658 39 1 2.2720 2.1230 -1.9978 40 1 0.6332 3.7635 -4.3957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753473196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:59 Heat of formation + Delta-G solvation = -65.243336 kcal Electronic energy + Delta-G solvation = -21003.223543 eV Core-core repulsion = 17818.264789 eV Total energy + Delta-G solvation = -3184.958754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88156 -39.95904 -38.24741 -35.69060 -35.27018 -34.14430 -31.52453 -30.38795 -29.11385 -26.45208 -25.82558 -24.69484 -23.20175 -22.03495 -21.62967 -20.54926 -19.23389 -18.49235 -17.26416 -17.01160 -16.67200 -16.46115 -16.01409 -15.84229 -15.56237 -15.29707 -14.90427 -14.61979 -14.29301 -14.10718 -13.81375 -13.62523 -13.03054 -12.96224 -12.80591 -12.78079 -12.37060 -12.25567 -12.07529 -11.87699 -11.79582 -11.64698 -11.34002 -11.32083 -10.98430 -10.82341 -10.57530 -10.07923 -8.97120 -7.86823 -5.13868 1.43310 1.50006 1.52958 1.60109 2.08853 2.41341 2.60515 2.98038 3.34885 3.43171 3.46981 3.70169 3.87242 3.94387 3.96300 4.00214 4.34230 4.36283 4.47255 4.54658 4.57641 4.64533 4.68292 4.74591 4.77210 4.85420 4.86684 5.07978 5.08521 5.12628 5.20537 5.44292 5.55533 5.62688 5.67815 5.72027 6.33437 6.53109 7.16192 7.41633 8.12252 8.37899 9.36296 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.005323 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.223787 B = 5258.903242 C = 6172.248578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.703 5.703 7 C 0.554 3.446 8 O -0.587 6.587 9 C -0.229 4.229 10 C -0.093 4.093 11 C -0.153 4.153 12 H 0.123 0.877 13 C 0.072 3.928 14 O -0.390 6.390 15 C 0.090 3.910 16 N -0.727 5.727 17 C -0.215 4.215 18 H 0.080 0.920 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.298 1.298 24 H -0.303 1.303 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.412 0.588 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.372 0.628 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 3.829 8.234 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.352 5.352 7 C 0.341 3.659 8 O -0.469 6.469 9 C -0.233 4.233 10 C -0.130 4.130 11 C -0.172 4.172 12 H 0.141 0.859 13 C -0.003 4.003 14 O -0.309 6.309 15 C 0.013 3.987 16 N -0.367 5.367 17 C -0.347 4.347 18 H 0.098 0.902 19 C -0.263 4.263 20 N -0.619 5.619 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.225 1.225 24 H -0.231 1.231 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.248 0.752 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.204 0.796 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.954 3.289 8.683 13.612 hybrid contribution -1.102 0.238 -1.107 1.580 sum 8.852 3.527 7.576 12.174 Atomic orbital electron populations 1.21694 0.95844 1.00616 1.01835 1.21991 0.96737 0.97299 1.01018 1.20703 0.90622 0.93381 0.89634 0.92259 1.21602 0.94634 0.82700 1.01351 1.45892 1.06985 1.10710 1.71656 1.19522 0.82181 0.89127 0.75095 1.90635 1.57092 1.47215 1.51922 1.23320 0.97900 0.94222 1.07830 1.23246 0.96039 1.04326 0.89421 1.24430 0.92261 1.00690 0.99828 0.85898 1.23201 0.88315 0.95042 0.93769 1.89042 1.19258 1.86926 1.35686 1.22735 0.90893 0.93854 0.91168 1.42563 1.15829 1.66071 1.12245 1.19525 0.92418 1.25213 0.97507 0.90202 1.25341 1.00853 1.03476 0.96653 1.69803 1.36695 1.51022 1.04335 0.85298 0.81013 0.77467 0.77352 1.19130 1.22518 1.23099 0.93187 0.93199 0.92854 0.93593 0.90758 0.93086 0.90418 0.75186 0.87930 0.85127 0.86587 0.89166 0.89347 0.88714 0.79551 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.18 71.98 0.66 -4.08 16 2 C -0.13 -4.20 5.61 30.59 0.17 -4.03 16 3 C 0.17 5.83 2.59 44.99 0.12 5.95 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 4.05 5.23 86.38 0.45 4.50 16 6 N -0.70 -23.33 5.28 -463.05 -2.45 -25.77 16 7 C 0.55 18.79 7.42 87.66 0.65 19.44 16 8 O -0.59 -23.57 16.85 -3.03 -0.05 -23.62 16 9 C -0.23 -6.14 2.84 -51.91 -0.15 -6.29 16 10 C -0.09 -2.03 9.89 30.59 0.30 -1.73 16 11 C -0.15 -3.39 6.90 -9.78 -0.07 -3.45 16 12 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 13 C 0.07 1.32 7.45 72.49 0.54 1.86 16 14 O -0.39 -9.72 11.62 -148.98 -1.73 -11.45 16 15 C 0.09 2.17 7.09 72.48 0.51 2.69 16 16 N -0.73 -32.30 4.51 -322.94 -1.46 -33.75 16 17 C -0.21 -10.58 7.75 84.03 0.65 -9.93 16 18 H 0.08 3.80 7.32 -2.91 -0.02 3.78 16 19 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 20 N -0.97 -55.66 13.06 21.65 0.28 -55.38 16 21 Si 0.96 43.72 29.55 68.60 2.03 45.74 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 2.01 5.99 -2.38 -0.01 2.00 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.41 13.71 7.93 -92.70 -0.73 12.98 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.09 2.33 7.87 -2.38 -0.02 2.32 16 39 H 0.37 18.51 7.80 -92.71 -0.72 17.79 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -63.40 330.64 0.52 -62.88 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.41 Total: 39.73 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 4.31 Total: 1.63 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.62 Total: -114.90 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.78 Total: -35.07 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -63.40 0.52 -62.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753473196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.367 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds