Wall clock time and date at job start Mon Mar 30 2020 01:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 119.99984 * 2 1 4 4 C 1.53003 * 109.47222 * 124.99501 * 3 2 1 5 5 O 1.42903 * 109.47315 * 179.97438 * 4 3 2 6 6 C 1.42894 * 113.99749 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47132 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00018 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00238 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00154 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47338 * 179.97438 * 10 9 7 12 12 H 1.08996 * 112.77506 * 56.27308 * 11 10 9 13 13 C 1.53756 * 113.55250 * 187.13463 * 11 10 9 14 14 C 1.53492 * 83.25530 * 140.98868 * 13 11 10 15 15 N 1.47060 * 87.98955 * 333.76204 * 14 13 11 16 16 C 1.36943 * 136.06025 * 207.08609 * 15 14 13 17 17 H 1.08002 * 119.99788 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 0.27775 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48496 * 109.47031 * 59.99836 * 20 18 16 22 22 H 1.48497 * 109.47267 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47169 * 300.00118 * 20 18 16 24 24 H 1.08001 * 119.99607 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00097 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99899 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47133 * 5.00397 * 3 2 1 28 28 H 1.09000 * 109.47852 * 245.00128 * 3 2 1 29 29 H 1.09004 * 109.46336 * 60.00408 * 4 3 2 30 30 H 1.09000 * 109.47219 * 300.01015 * 4 3 2 31 31 H 1.09004 * 109.47163 * 60.00228 * 6 5 4 32 32 H 1.09005 * 109.47473 * 300.00122 * 6 5 4 33 33 H 0.97003 * 120.00379 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.46849 * 59.99253 * 10 9 7 35 35 H 1.08995 * 109.46754 * 299.99884 * 10 9 7 36 36 H 1.08993 * 114.39365 * 27.42642 * 13 11 10 37 37 H 1.09006 * 114.26383 * 254.54044 * 13 11 10 38 38 H 1.09004 * 113.46349 * 218.98046 * 14 13 11 39 39 H 1.09006 * 113.52425 * 88.55450 * 14 13 11 40 40 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7499 2.5704 1.1814 6 6 4.6893 2.6991 2.2504 7 6 5.3814 4.0342 2.1531 8 8 5.0977 4.8004 1.2567 9 7 6.3155 4.3770 3.0620 10 6 6.9879 5.6752 2.9677 11 6 7.9939 5.8130 4.1122 12 1 8.7222 5.0024 4.1337 13 6 8.6293 7.2099 4.2069 14 6 8.4853 6.9747 5.7168 15 7 7.3652 6.0702 5.4167 16 6 6.2367 5.6485 6.0677 17 1 5.5647 4.9524 5.5877 18 6 5.9533 6.1205 7.3419 19 7 6.7719 6.9691 7.9266 20 14 4.4098 5.5512 8.2269 21 1 4.4492 4.0758 8.3912 22 1 4.3389 6.1958 9.5628 23 1 3.2147 5.9287 7.4303 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 3.7399 0.5066 1.0921 30 1 2.4772 1.2355 2.1131 31 1 5.4283 1.9006 2.1829 32 1 4.1661 2.6302 3.2042 33 1 6.5422 3.7644 3.7792 34 1 6.2485 6.4731 3.0361 35 1 7.5106 5.7451 2.0138 36 1 8.0060 8.0152 3.8186 37 1 9.6611 7.2572 3.8583 38 1 8.1874 7.8664 6.2685 39 1 9.3430 6.4705 6.1623 40 1 6.5740 7.2986 8.8172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754505951.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:45 Heat of formation + Delta-G solvation = -9.080087 kcal Electronic energy + Delta-G solvation = -20057.962126 eV Core-core repulsion = 16875.438793 eV Total energy + Delta-G solvation = -3182.523333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.54179 -38.30316 -37.58208 -35.18068 -34.01938 -32.24801 -30.20410 -28.63831 -27.95918 -26.27377 -23.49814 -23.17814 -21.96256 -20.39981 -20.00764 -19.23453 -17.24886 -16.83707 -16.53441 -16.43266 -15.47689 -15.22327 -15.15793 -14.61119 -14.21892 -13.93942 -13.54679 -13.49021 -13.05750 -12.91323 -12.47683 -11.90336 -11.67296 -11.53089 -11.41181 -11.30431 -11.13453 -10.99204 -10.79002 -10.60797 -10.01682 -9.86817 -9.79854 -9.66372 -9.57177 -9.19409 -8.84089 -8.57674 -6.93381 -5.80099 -3.12958 1.93334 2.91369 3.03711 3.35205 3.40339 3.41571 4.04218 4.40380 4.68455 4.81856 4.89807 4.98647 5.09556 5.16569 5.18860 5.21782 5.26820 5.37608 5.54498 5.56589 5.70360 5.70993 5.79791 5.90002 6.09491 6.31113 6.31468 6.38702 6.44650 6.58203 6.70194 6.84102 7.00460 7.19747 7.36927 7.54728 7.88053 7.94270 8.56037 8.99270 9.66815 10.59807 11.37064 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.004012 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.446516 B = 6976.875686 C = 8279.923276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.364 6.364 6 C 0.045 3.955 7 C 0.510 3.490 8 O -0.532 6.532 9 N -0.713 5.713 10 C 0.124 3.876 11 C 0.127 3.873 12 H 0.049 0.951 13 C -0.161 4.161 14 C 0.151 3.849 15 N -0.602 5.602 16 C -0.216 4.216 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.284 1.284 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 -11.810 -11.757 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.282 6.282 6 C -0.035 4.035 7 C 0.295 3.705 8 O -0.408 6.408 9 N -0.365 5.365 10 C -0.001 4.001 11 C 0.020 3.980 12 H 0.066 0.934 13 C -0.200 4.200 14 C 0.025 3.975 15 N -0.328 5.328 16 C -0.343 4.343 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.087 -11.105 -12.246 17.029 hybrid contribution -0.630 -0.997 1.283 1.743 sum -4.718 -12.103 -10.963 16.998 Atomic orbital electron populations 1.23914 0.95913 1.02067 1.00665 1.22811 0.96022 0.97996 1.00307 1.20641 0.97995 0.95876 0.98556 1.22482 0.94007 0.86223 0.98558 1.87985 1.54385 1.37254 1.48595 1.22220 0.93046 0.96313 0.91956 1.20129 0.80026 0.87996 0.82353 1.90693 1.63392 1.52504 1.34249 1.45856 1.40240 1.20416 1.29970 1.21807 0.95539 0.84318 0.98398 1.22469 0.92606 0.95932 0.87038 0.93413 1.23703 0.98932 0.96728 1.00614 1.22031 0.89104 0.95015 0.91321 1.45696 1.21363 1.51987 1.13739 1.18797 0.96262 1.22350 0.96938 0.90274 1.24778 0.98673 0.99776 0.97109 1.69810 1.37120 1.34479 1.15084 0.86258 0.82783 0.77986 0.79083 1.21219 1.21502 1.21066 0.88342 0.88352 0.87197 0.90436 0.89959 0.93114 0.92982 0.90496 0.90138 0.76258 0.91043 0.92203 0.90161 0.92326 0.90971 0.95730 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 14.32 29.01 0.42 -1.01 16 2 C -0.15 -1.23 9.52 -36.03 -0.34 -1.57 16 3 C -0.09 -0.91 6.03 -27.88 -0.17 -1.07 16 4 C 0.06 0.68 5.92 37.16 0.22 0.90 16 5 O -0.36 -5.36 9.88 -55.14 -0.54 -5.91 16 6 C 0.04 0.60 6.42 36.00 0.23 0.83 16 7 C 0.51 8.88 7.91 -10.99 -0.09 8.80 16 8 O -0.53 -11.43 16.50 -14.35 -0.24 -11.67 16 9 N -0.71 -12.00 5.33 -60.29 -0.32 -12.32 16 10 C 0.12 2.24 5.53 -4.04 -0.02 2.22 16 11 C 0.13 2.42 4.11 -72.28 -0.30 2.12 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 13 C -0.16 -2.91 8.04 -26.08 -0.21 -3.12 16 14 C 0.15 3.42 7.39 -8.53 -0.06 3.36 16 15 N -0.60 -14.52 3.65 -176.87 -0.65 -15.16 16 16 C -0.22 -5.73 10.55 -15.06 -0.16 -5.88 16 17 H 0.08 1.99 7.51 -52.49 -0.39 1.59 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -26.78 11.51 55.49 0.64 -26.14 16 20 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 25 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 26 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 6.24 8.38 -40.82 -0.34 5.90 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.45 8.13 -51.93 -0.42 1.03 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -32.94 341.58 -8.12 -41.06 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.55 Total: 3.00 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.58 Total: 5.30 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.33 Total: -53.62 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.78 Total: -17.57 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.94 -8.12 -41.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754505951.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.976 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds