Wall clock time and date at job start Mon Mar 30 2020 01:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50700 * 119.99619 * 2 1 4 4 C 1.32991 * 120.00337 * 179.97438 * 2 1 3 5 5 C 1.47102 * 120.00018 * 351.91089 * 4 2 1 6 6 O 1.21618 * 120.00000 * 354.43813 * 5 4 2 7 7 N 1.34776 * 120.00042 * 174.71332 * 5 4 2 8 8 C 1.46504 * 119.99737 * 174.98765 * 7 5 4 9 9 C 1.52999 * 112.94428 * 294.46815 * 8 7 5 10 10 C 1.53002 * 109.47361 * 304.91139 * 9 8 7 11 11 O 1.42893 * 109.47080 * 184.82143 * 10 9 8 12 12 C 1.53948 * 113.73850 * 162.88261 * 8 7 5 13 13 N 1.47817 * 86.03470 * 222.07963 * 12 8 7 14 14 C 1.36938 * 134.45840 * 204.64237 * 13 12 8 15 15 H 1.08000 * 119.99932 * 179.86889 * 14 13 12 16 16 C 1.38811 * 119.99600 * 359.86697 * 14 13 12 17 17 N 1.31608 * 120.00318 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99400 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47664 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46964 * 120.00165 * 18 16 14 21 21 H 1.48505 * 109.47192 * 239.99831 * 18 16 14 22 22 C 1.47584 * 91.05047 * 24.54974 * 13 12 8 23 23 H 1.09000 * 109.47422 * 263.63332 * 1 2 3 24 24 H 1.08997 * 109.47662 * 23.63777 * 1 2 3 25 25 H 1.09004 * 109.47060 * 143.63722 * 1 2 3 26 26 H 1.08998 * 109.46892 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46686 * 299.99368 * 3 2 1 28 28 H 1.08996 * 109.47706 * 59.99509 * 3 2 1 29 29 H 1.07999 * 120.00101 * 171.90870 * 4 2 1 30 30 H 0.96993 * 120.00396 * 354.97986 * 7 5 4 31 31 H 1.09007 * 109.46941 * 64.91462 * 9 8 7 32 32 H 1.08998 * 109.47326 * 184.91065 * 9 8 7 33 33 H 1.08995 * 109.47118 * 304.82189 * 10 9 8 34 34 H 1.08997 * 109.46510 * 64.82580 * 10 9 8 35 35 H 0.96704 * 113.99867 * 180.02562 * 11 10 9 36 36 H 1.08997 * 113.76735 * 336.34287 * 12 8 7 37 37 H 1.08997 * 113.77120 * 107.74579 * 12 8 7 38 38 H 0.97009 * 119.99992 * 179.97438 * 17 16 14 39 39 H 1.09003 * 113.77074 * 221.15034 * 22 13 12 40 40 H 1.08999 * 113.87158 * 89.76494 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4476 -2.4193 0.1803 6 8 0.2572 -2.4093 0.4293 7 7 2.1041 -3.5915 0.0747 8 6 1.4089 -4.8488 0.3615 9 6 0.9894 -4.9776 1.8272 10 6 2.2141 -4.7956 2.7261 11 8 1.8447 -5.0266 4.0870 12 6 2.1276 -6.0939 -0.1891 13 7 0.7855 -6.5635 -0.5932 14 6 0.2306 -7.7928 -0.8302 15 1 -0.8066 -7.8701 -1.1210 16 6 1.0014 -8.9395 -0.6967 17 7 2.2652 -8.8454 -0.3419 18 14 0.2442 -10.6164 -1.0193 19 1 -1.1815 -10.4509 -1.4004 20 1 0.9768 -11.2861 -2.1239 21 1 0.3355 -11.4455 0.2094 22 6 0.2834 -5.1764 -0.6364 23 1 -0.3634 -0.1140 1.0213 24 1 -0.3634 0.9414 -0.4120 25 1 -0.3633 -0.8276 -0.6093 26 1 3.3320 1.1060 0.0005 27 1 1.9971 1.8766 -0.8901 28 1 1.9970 1.8768 0.8899 29 1 3.2439 -1.1564 -0.1311 30 1 3.0368 -3.6028 -0.1912 31 1 0.2494 -4.2124 2.0619 32 1 0.5580 -5.9642 1.9964 33 1 2.9879 -5.5055 2.4341 34 1 2.5945 -3.7796 2.6204 35 1 2.5737 -4.9279 4.7147 36 1 2.7905 -5.8833 -1.0283 37 1 2.5956 -6.7075 0.5807 38 1 2.8037 -9.6468 -0.2482 39 1 -0.7183 -5.0587 -0.2230 40 1 0.4024 -4.6942 -1.6066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755330690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:29 Heat of formation + Delta-G solvation = -19.216179 kcal Electronic energy + Delta-G solvation = -21194.304429 eV Core-core repulsion = 18011.341562 eV Total energy + Delta-G solvation = -3182.962867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98997 -38.10095 -36.34484 -35.28918 -33.55505 -31.89222 -30.33549 -28.09945 -27.71355 -26.82979 -25.01055 -23.41424 -21.91217 -20.82498 -18.82431 -18.26449 -17.00507 -16.78902 -16.66398 -15.48727 -14.91049 -14.67892 -14.52693 -14.17569 -13.95487 -13.87500 -13.54676 -13.38802 -12.55633 -12.45876 -12.32067 -11.90470 -11.79417 -11.59014 -11.56451 -11.48892 -11.01442 -10.88567 -10.73666 -10.65781 -10.07532 -9.85527 -9.63738 -9.49174 -9.15656 -8.99816 -8.85591 -8.44569 -6.89839 -5.78416 -3.09894 1.46859 3.40034 3.45631 3.48232 3.58044 3.63067 4.47851 4.52257 4.77719 4.80619 5.16788 5.25616 5.25993 5.32768 5.43222 5.51380 5.56986 5.64050 5.67035 5.75152 5.86077 5.89217 5.99047 6.13369 6.39226 6.49539 6.54748 6.55366 6.60803 6.70135 6.80162 6.89588 7.15303 7.37484 7.51187 7.92375 7.94344 8.00266 8.67670 9.03748 9.69895 10.56876 11.39367 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025453 B = 0.004844 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.823165 B = 5779.363704 C = 6325.984664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.043 4.043 3 C -0.124 4.124 4 C -0.230 4.230 5 C 0.541 3.459 6 O -0.537 6.537 7 N -0.714 5.714 8 C 0.124 3.876 9 C -0.094 4.094 10 C 0.083 3.917 11 O -0.575 6.575 12 C 0.166 3.834 13 N -0.606 5.606 14 C -0.218 4.218 15 H 0.083 0.917 16 C -0.007 4.007 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.130 3.870 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.396 0.604 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.371 0.629 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.051 0.949 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 17.166 2.836 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.045 4.045 3 C -0.181 4.181 4 C -0.251 4.251 5 C 0.330 3.670 6 O -0.416 6.416 7 N -0.365 5.365 8 C 0.038 3.962 9 C -0.132 4.132 10 C 0.006 3.994 11 O -0.379 6.379 12 C 0.040 3.960 13 N -0.332 5.332 14 C -0.346 4.346 15 H 0.100 0.900 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.003 3.997 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.230 0.770 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.217 0.783 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.728 16.675 2.714 17.114 hybrid contribution 0.971 -0.832 -0.287 1.311 sum 3.699 15.843 2.427 16.450 Atomic orbital electron populations 1.21078 0.90897 1.02047 1.03699 1.22500 0.96913 0.94321 0.90787 1.20982 0.99747 0.94718 1.02646 1.22531 1.00073 0.92532 1.09970 1.18522 0.87052 0.84100 0.77322 1.90745 1.14857 1.87540 1.48463 1.46113 1.14905 1.06002 1.69431 1.22886 0.96342 0.82571 0.94409 1.21315 0.96991 1.04115 0.90801 1.22117 0.97774 0.98246 0.81284 1.86502 1.39825 1.94143 1.17442 1.22576 0.89203 0.87702 0.96534 1.45739 1.07495 0.99723 1.80272 1.19062 0.94756 0.81038 1.39720 0.89969 1.24759 0.95877 0.97701 1.02010 1.69796 1.06224 1.27524 1.53456 0.86032 0.78225 0.83997 0.77443 1.20413 1.21790 1.21649 1.22771 0.96249 0.85695 0.94958 0.90429 0.93146 0.89184 0.91586 0.90956 0.90658 0.86017 0.77043 0.91031 0.89165 0.93363 0.94654 0.78307 0.95227 0.90078 0.93693 0.93094 0.94755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.45 36.00 0.30 -1.14 16 2 C -0.04 -0.47 6.10 -101.17 -0.62 -1.09 16 3 C -0.12 -0.93 10.09 36.01 0.36 -0.57 16 4 C -0.23 -2.75 9.62 -37.81 -0.36 -3.11 16 5 C 0.54 8.45 7.28 -12.67 -0.09 8.36 16 6 O -0.54 -9.96 11.71 5.26 0.06 -9.90 16 7 N -0.71 -11.09 4.63 -50.24 -0.23 -11.32 16 8 C 0.12 2.41 0.67 -134.03 -0.09 2.32 16 9 C -0.09 -1.84 4.82 -26.73 -0.13 -1.97 16 10 C 0.08 1.39 6.77 37.16 0.25 1.64 16 11 O -0.57 -9.43 13.66 -35.23 -0.48 -9.91 16 12 C 0.17 3.79 6.65 -2.83 -0.02 3.77 16 13 N -0.61 -15.69 3.55 -177.49 -0.63 -16.32 16 14 C -0.22 -6.18 10.70 -15.06 -0.16 -6.35 16 15 H 0.08 2.28 7.83 -52.49 -0.41 1.86 16 16 C -0.01 -0.20 5.50 -17.44 -0.10 -0.30 16 17 N -0.92 -26.97 11.39 55.49 0.63 -26.33 16 18 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C 0.13 2.90 7.51 -2.96 -0.02 2.87 16 23 H 0.08 0.99 7.99 -51.93 -0.41 0.58 16 24 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.09 1.30 6.26 -51.93 -0.32 0.98 16 26 H 0.07 0.43 7.82 -51.93 -0.41 0.03 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.12 1.14 7.89 -52.49 -0.41 0.72 16 30 H 0.40 5.07 8.69 -40.82 -0.35 4.72 16 31 H 0.07 1.47 7.14 -51.92 -0.37 1.10 16 32 H 0.09 2.06 8.02 -51.93 -0.42 1.64 16 33 H 0.05 0.81 7.47 -51.93 -0.39 0.42 16 34 H 0.04 0.53 7.83 -51.93 -0.41 0.12 16 35 H 0.37 4.04 9.12 45.56 0.42 4.46 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 2.02 6.58 -51.93 -0.34 1.68 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -33.23 329.67 -6.88 -40.10 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.50 Total: 7.00 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.67 Total: 4.43 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.23 Total: -53.97 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.42 Total: -19.80 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.23 -6.88 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755330690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.888 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds