Wall clock time and date at job start Mon Mar 30 2020 01:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50700 * 119.99619 * 2 1 4 4 C 1.32991 * 120.00337 * 179.97438 * 2 1 3 5 5 C 1.47102 * 120.00018 * 351.91089 * 4 2 1 6 6 O 1.21618 * 120.00000 * 354.43813 * 5 4 2 7 7 N 1.34776 * 120.00042 * 174.71332 * 5 4 2 8 8 C 1.46504 * 119.99737 * 174.98765 * 7 5 4 9 9 C 1.52999 * 112.94428 * 294.46815 * 8 7 5 10 10 C 1.53002 * 109.47361 * 304.91139 * 9 8 7 11 11 O 1.42893 * 109.47080 * 184.82143 * 10 9 8 12 12 C 1.53948 * 113.73850 * 162.88261 * 8 7 5 13 13 N 1.47817 * 86.03470 * 222.07963 * 12 8 7 14 14 C 1.36938 * 134.45840 * 204.64237 * 13 12 8 15 15 H 1.08000 * 119.99932 * 179.86889 * 14 13 12 16 16 C 1.38811 * 119.99600 * 359.86697 * 14 13 12 17 17 N 1.31608 * 120.00318 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99400 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47664 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46964 * 120.00165 * 18 16 14 21 21 H 1.48505 * 109.47192 * 239.99831 * 18 16 14 22 22 C 1.47584 * 91.05047 * 24.54974 * 13 12 8 23 23 H 1.09000 * 109.47422 * 263.63332 * 1 2 3 24 24 H 1.08997 * 109.47662 * 23.63777 * 1 2 3 25 25 H 1.09004 * 109.47060 * 143.63722 * 1 2 3 26 26 H 1.08998 * 109.46892 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46686 * 299.99368 * 3 2 1 28 28 H 1.08996 * 109.47706 * 59.99509 * 3 2 1 29 29 H 1.07999 * 120.00101 * 171.90870 * 4 2 1 30 30 H 0.96993 * 120.00396 * 354.97986 * 7 5 4 31 31 H 1.09007 * 109.46941 * 64.91462 * 9 8 7 32 32 H 1.08998 * 109.47326 * 184.91065 * 9 8 7 33 33 H 1.08995 * 109.47118 * 304.82189 * 10 9 8 34 34 H 1.08997 * 109.46510 * 64.82580 * 10 9 8 35 35 H 0.96704 * 113.99867 * 180.02562 * 11 10 9 36 36 H 1.08997 * 113.76735 * 336.34287 * 12 8 7 37 37 H 1.08997 * 113.77120 * 107.74579 * 12 8 7 38 38 H 0.97009 * 119.99992 * 179.97438 * 17 16 14 39 39 H 1.09003 * 113.77074 * 221.15034 * 22 13 12 40 40 H 1.08999 * 113.87158 * 89.76494 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4476 -2.4193 0.1803 6 8 0.2572 -2.4093 0.4293 7 7 2.1041 -3.5915 0.0747 8 6 1.4089 -4.8488 0.3615 9 6 0.9894 -4.9776 1.8272 10 6 2.2141 -4.7956 2.7261 11 8 1.8447 -5.0266 4.0870 12 6 2.1276 -6.0939 -0.1891 13 7 0.7855 -6.5635 -0.5932 14 6 0.2306 -7.7928 -0.8302 15 1 -0.8066 -7.8701 -1.1210 16 6 1.0014 -8.9395 -0.6967 17 7 2.2652 -8.8454 -0.3419 18 14 0.2442 -10.6164 -1.0193 19 1 -1.1815 -10.4509 -1.4004 20 1 0.9768 -11.2861 -2.1239 21 1 0.3355 -11.4455 0.2094 22 6 0.2834 -5.1764 -0.6364 23 1 -0.3634 -0.1140 1.0213 24 1 -0.3634 0.9414 -0.4120 25 1 -0.3633 -0.8276 -0.6093 26 1 3.3320 1.1060 0.0005 27 1 1.9971 1.8766 -0.8901 28 1 1.9970 1.8768 0.8899 29 1 3.2439 -1.1564 -0.1311 30 1 3.0368 -3.6028 -0.1912 31 1 0.2494 -4.2124 2.0619 32 1 0.5580 -5.9642 1.9964 33 1 2.9879 -5.5055 2.4341 34 1 2.5945 -3.7796 2.6204 35 1 2.5737 -4.9279 4.7147 36 1 2.7905 -5.8833 -1.0283 37 1 2.5956 -6.7075 0.5807 38 1 2.8037 -9.6468 -0.2482 39 1 -0.7183 -5.0587 -0.2230 40 1 0.4024 -4.6942 -1.6066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755330690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:28 Heat of formation + Delta-G solvation = -44.481792 kcal Electronic energy + Delta-G solvation = -21195.400028 eV Core-core repulsion = 18011.341562 eV Total energy + Delta-G solvation = -3184.058466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45752 -39.57683 -37.71365 -36.27971 -35.17284 -33.77108 -31.93425 -29.30967 -28.62344 -28.41230 -26.85535 -25.09904 -23.41965 -22.34954 -20.18899 -19.53300 -18.78401 -18.32608 -17.81244 -17.15798 -16.68334 -16.12545 -15.94801 -15.56209 -15.19405 -15.10058 -14.95999 -14.47482 -14.34125 -13.69813 -13.36436 -13.34731 -13.16987 -13.08281 -12.88708 -12.80597 -12.63029 -12.52670 -12.35673 -12.21248 -11.97000 -11.73904 -11.38577 -10.96181 -10.87996 -10.42853 -10.11158 -9.76822 -8.97191 -7.94245 -5.27442 0.51523 1.45205 1.46258 1.56452 2.25186 2.43076 2.51801 3.15269 3.25927 3.39381 3.61685 3.91219 4.01273 4.13725 4.25762 4.30468 4.43039 4.48964 4.62297 4.71059 4.71487 4.75710 4.84592 4.86314 4.97558 5.03665 5.10337 5.12414 5.17527 5.21465 5.28337 5.46225 5.61680 5.72355 5.78869 5.88586 6.77912 6.89332 6.90749 7.45621 7.55480 8.49211 9.22882 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025453 B = 0.004844 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.823165 B = 5779.363704 C = 6325.984664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.031 4.031 3 C -0.121 4.121 4 C -0.243 4.243 5 C 0.536 3.464 6 O -0.572 6.572 7 N -0.706 5.706 8 C 0.157 3.843 9 C -0.087 4.087 10 C 0.094 3.906 11 O -0.593 6.593 12 C 0.172 3.828 13 N -0.632 5.632 14 C -0.239 4.239 15 H 0.079 0.921 16 C -0.057 4.057 17 N -0.947 5.947 18 Si 0.978 3.022 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.128 3.872 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.413 0.587 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.397 0.603 36 H 0.033 0.967 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.038 0.962 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 19.098 2.878 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.033 4.033 3 C -0.177 4.177 4 C -0.264 4.264 5 C 0.327 3.673 6 O -0.454 6.454 7 N -0.358 5.358 8 C 0.069 3.931 9 C -0.126 4.126 10 C 0.017 3.983 11 O -0.402 6.402 12 C 0.046 3.954 13 N -0.359 5.359 14 C -0.367 4.367 15 H 0.096 0.904 16 C -0.251 4.251 17 N -0.595 5.595 18 Si 0.806 3.194 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.216 1.216 22 C 0.002 3.998 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.172 0.828 30 H 0.250 0.750 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.034 18.650 2.762 19.280 hybrid contribution 0.500 -1.334 -0.288 1.454 sum 4.534 17.316 2.474 18.070 Atomic orbital electron populations 1.21034 0.92234 1.02155 1.02508 1.22848 0.96325 0.95823 0.88343 1.21049 1.00159 0.92666 1.03849 1.22538 1.01424 0.90479 1.11938 1.19204 0.86791 0.85005 0.76258 1.90748 1.16620 1.88030 1.49986 1.45877 1.15570 1.04626 1.69719 1.22126 0.94171 0.83351 0.93429 1.21169 0.98251 1.01347 0.91858 1.21931 0.95709 0.99589 0.81110 1.86438 1.41782 1.94281 1.17655 1.22455 0.88219 0.88731 0.95979 1.46027 1.09117 1.00245 1.80531 1.19365 0.95026 0.82593 1.39734 0.90365 1.25546 0.96450 1.00971 1.02106 1.69948 1.07200 1.28159 1.54213 0.85022 0.77850 0.79462 0.77037 1.19456 1.21479 1.21633 1.22831 0.96702 0.84384 0.95911 0.91654 0.90637 0.92149 0.90012 0.89490 0.89419 0.82752 0.75050 0.92055 0.93091 0.93409 0.92138 0.75358 0.94906 0.92348 0.93964 0.94396 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.45 71.24 0.60 -2.19 16 2 C -0.03 -0.60 6.10 -17.62 -0.11 -0.71 16 3 C -0.12 -1.30 10.09 71.24 0.72 -0.58 16 4 C -0.24 -5.15 9.62 23.43 0.23 -4.93 16 5 C 0.54 16.16 7.28 86.57 0.63 16.79 16 6 O -0.57 -21.39 11.71 -4.09 -0.05 -21.44 16 7 N -0.71 -21.19 4.63 -431.11 -2.00 -23.18 16 8 C 0.16 6.16 0.67 5.36 0.00 6.17 16 9 C -0.09 -3.52 4.82 30.59 0.15 -3.37 16 10 C 0.09 3.06 6.77 71.98 0.49 3.54 16 11 O -0.59 -18.82 13.66 -148.98 -2.03 -20.85 16 12 C 0.17 8.01 6.65 86.44 0.57 8.58 16 13 N -0.63 -33.77 3.55 -715.46 -2.54 -36.31 16 14 C -0.24 -13.91 10.70 84.03 0.90 -13.01 16 15 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 16 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 17 N -0.95 -56.28 11.39 21.65 0.25 -56.03 16 18 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 C 0.13 5.88 7.51 86.49 0.65 6.53 16 23 H 0.06 1.64 7.99 -2.39 -0.02 1.62 16 24 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 25 H 0.06 1.75 6.26 -2.38 -0.01 1.74 16 26 H 0.08 0.67 7.82 -2.39 -0.02 0.65 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.15 2.23 7.89 -2.91 -0.02 2.20 16 30 H 0.41 9.74 8.69 -92.71 -0.81 8.94 16 31 H 0.06 2.58 7.14 -2.38 -0.02 2.57 16 32 H 0.05 2.44 8.02 -2.39 -0.02 2.42 16 33 H 0.05 1.56 7.47 -2.39 -0.02 1.54 16 34 H 0.06 1.67 7.83 -2.39 -0.02 1.66 16 35 H 0.40 7.86 9.12 -74.05 -0.68 7.18 16 36 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 2.99 6.58 -2.39 -0.02 2.98 16 38 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 39 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.82 329.67 0.52 -73.30 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.43 Total: 22.06 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 5.30 Total: 14.01 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -4.29 Total: -115.52 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -2.08 Total: -42.29 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -73.82 0.52 -73.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755330690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.822 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds