Wall clock time and date at job start Mon Mar 30 2020 01:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.46961 * 2 1 4 4 N 1.46494 * 109.47304 * 119.99306 * 2 1 3 5 5 C 1.34772 * 120.00587 * 275.00423 * 4 2 1 6 6 O 1.21696 * 119.99696 * 359.97438 * 5 4 2 7 7 C 1.46372 * 120.00471 * 179.97438 * 5 4 2 8 8 H 1.08004 * 120.00062 * 359.97438 * 7 5 4 9 9 C 1.40046 * 120.00198 * 179.97438 * 7 5 4 10 10 N 1.30673 * 120.00136 * 0.02562 * 9 7 5 11 11 Si 1.86807 * 120.00166 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46779 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47180 * 120.00250 * 11 9 7 14 14 H 1.48501 * 109.46960 * 240.00463 * 11 9 7 15 15 C 1.50697 * 109.47352 * 240.00104 * 2 1 3 16 16 O 1.21286 * 119.99513 * 254.62096 * 15 2 1 17 17 N 1.34770 * 120.00646 * 74.89253 * 15 2 1 18 18 C 1.46926 * 120.62703 * 353.47672 * 17 15 2 19 19 C 1.53625 * 108.54539 * 126.36494 * 18 17 15 20 20 C 1.53046 * 109.24063 * 54.85484 * 19 18 17 21 21 C 1.53044 * 109.53819 * 298.51583 * 20 19 18 22 22 C 1.46923 * 120.63493 * 173.75439 * 17 15 2 23 23 H 1.09001 * 109.58605 * 113.80271 * 22 17 15 24 24 C 1.52999 * 109.58475 * 353.37581 * 22 17 15 25 25 H 1.09002 * 109.47466 * 175.15755 * 1 2 3 26 26 H 1.09001 * 109.47634 * 295.16277 * 1 2 3 27 27 H 1.09006 * 109.47600 * 55.16346 * 1 2 3 28 28 H 0.97008 * 119.99523 * 94.99738 * 4 2 1 29 29 H 0.97006 * 120.00160 * 180.02562 * 10 9 7 30 30 H 1.09002 * 109.58945 * 246.20032 * 18 17 15 31 31 H 1.09004 * 109.58827 * 6.62814 * 18 17 15 32 32 H 1.09001 * 109.63587 * 294.87060 * 19 18 17 33 33 H 1.08994 * 109.46296 * 174.73850 * 19 18 17 34 34 H 1.09003 * 109.45960 * 178.48750 * 20 19 18 35 35 H 1.09001 * 109.45740 * 58.53220 * 20 19 18 36 36 H 1.08998 * 109.49048 * 301.41096 * 21 20 19 37 37 H 1.09000 * 109.49255 * 181.31814 * 21 20 19 38 38 H 1.08990 * 109.47324 * 67.26866 * 24 22 17 39 39 H 1.09005 * 109.46841 * 187.26819 * 24 22 17 40 40 H 1.09001 * 109.47113 * 307.26092 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6904 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8579 1.1628 2.4116 7 6 2.6344 -0.7081 3.5524 8 1 2.8906 -1.7562 3.5042 9 6 2.7686 -0.0093 4.7586 10 7 2.4582 1.2587 4.8172 11 14 3.3914 -0.8897 6.2840 12 1 3.6703 -2.3109 5.9559 13 1 4.6379 -0.2367 6.7582 14 1 2.3602 -0.8217 7.3504 15 6 2.0323 -0.7104 -1.2304 16 8 2.4971 -1.8269 -1.1387 17 7 1.9702 -0.1030 -2.4319 18 6 1.2880 1.1895 -2.5829 19 6 2.2581 2.1796 -3.2452 20 6 2.7699 1.5823 -4.5581 21 6 3.5290 0.2853 -4.2687 22 6 2.5781 -0.7235 -3.6168 23 1 1.7975 -1.0005 -4.3254 24 6 3.3608 -1.9698 -3.1985 25 1 -0.3634 -1.0240 -0.0868 26 1 -0.3634 0.4369 0.9301 27 1 -0.3634 0.5871 -0.8435 28 1 2.2489 -1.6317 1.1527 29 1 2.5516 1.7429 5.6526 30 1 0.4043 1.0654 -3.2088 31 1 0.9942 1.5644 -1.6024 32 1 3.0999 2.3688 -2.5791 33 1 1.7383 3.1156 -3.4497 34 1 3.4379 2.2933 -5.0444 35 1 1.9257 1.3704 -5.2141 36 1 4.3587 0.4924 -3.5929 37 1 3.9132 -0.1272 -5.2017 38 1 2.6676 -2.7317 -2.8423 39 1 3.9155 -2.3548 -4.0543 40 1 4.0573 -1.7108 -2.4010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274702332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:57 Heat of formation + Delta-G solvation = -72.183488 kcal Electronic energy + Delta-G solvation = -21482.717199 eV Core-core repulsion = 18297.457498 eV Total energy + Delta-G solvation = -3185.259702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51826 -37.75479 -36.82778 -34.20309 -32.82674 -32.56732 -32.10951 -29.49872 -27.54689 -26.11493 -24.85828 -23.64766 -22.10433 -20.85771 -19.51252 -18.81384 -17.53897 -16.21782 -16.05804 -15.45954 -15.17370 -14.76478 -14.42570 -14.22146 -13.91275 -13.70237 -13.33651 -13.10725 -12.71352 -12.49728 -12.33488 -12.18995 -11.79991 -11.61252 -11.55876 -11.15862 -11.09782 -11.06607 -10.97324 -10.84566 -10.75248 -10.61129 -10.42744 -10.17028 -8.85042 -8.78138 -8.49046 -7.63198 -7.53864 -6.18036 -4.61967 2.88172 3.04776 3.15264 3.23702 3.29150 4.13220 4.53724 4.59383 4.66813 4.71391 4.85784 4.91168 5.00545 5.16611 5.27166 5.35453 5.52237 5.58384 5.61576 5.69952 5.71807 5.80009 5.83844 5.90017 5.92656 5.99198 6.04729 6.13023 6.29648 6.32033 6.46509 6.68701 6.77955 7.46051 7.50602 7.98514 8.08123 8.36310 8.45046 9.04633 9.55636 10.60237 10.78321 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.004645 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.612793 B = 6027.045167 C = 6357.521668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.096 0.904 4 N -0.750 5.750 5 C 0.557 3.443 6 O -0.582 6.582 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.908 3.092 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.517 3.483 16 O -0.530 6.530 17 N -0.612 5.612 18 C 0.101 3.899 19 C -0.138 4.138 20 C -0.119 4.119 21 C -0.132 4.132 22 C 0.144 3.856 23 H 0.067 0.933 24 C -0.138 4.138 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.391 0.609 29 H 0.267 0.733 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 -0.403 -17.435 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.114 0.886 4 N -0.407 5.407 5 C 0.362 3.638 6 O -0.466 6.466 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.732 3.268 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.202 1.202 15 C 0.306 3.694 16 O -0.406 6.406 17 N -0.347 5.347 18 C -0.022 4.022 19 C -0.176 4.176 20 C -0.156 4.156 21 C -0.171 4.171 22 C 0.041 3.959 23 H 0.084 0.916 24 C -0.195 4.195 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.225 0.775 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.281 0.028 -17.217 17.264 hybrid contribution 0.390 -0.692 0.604 0.998 sum -0.891 -0.664 -16.612 16.649 Atomic orbital electron populations 1.22214 0.94760 1.01754 1.02819 1.20356 0.94476 0.97840 0.84738 0.88613 1.46058 1.72905 1.13683 1.08016 1.18237 0.77790 0.86350 0.81455 1.90584 1.55122 1.16354 1.84509 1.20911 1.46467 0.97306 0.93114 0.91258 1.25699 0.93294 0.94468 0.99688 1.70033 1.35361 1.08179 1.26161 0.86314 0.78759 0.80413 0.81284 1.18707 1.20176 1.20163 1.21168 0.77587 0.86276 0.84414 1.90681 1.45305 1.19096 1.85565 1.48147 1.56627 1.21858 1.08100 1.22003 0.94647 0.82940 1.02582 1.22022 1.00050 0.98291 0.97264 1.21514 0.99990 0.96901 0.97216 1.22026 0.98615 0.95632 1.00806 1.21226 0.94787 0.93308 0.86547 0.91551 1.22188 1.00787 0.96678 0.99849 0.92780 0.90516 0.92603 0.77546 0.92209 0.91337 0.88547 0.91110 0.90654 0.91778 0.91921 0.91367 0.91019 0.90425 0.94159 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.14 37.15 0.34 -2.35 16 2 C 0.14 2.67 2.12 -69.09 -0.15 2.52 16 3 H 0.10 2.00 6.62 -51.93 -0.34 1.66 16 4 N -0.75 -17.77 5.02 -56.35 -0.28 -18.05 16 5 C 0.56 16.01 7.71 -12.99 -0.10 15.91 16 6 O -0.58 -18.48 14.68 5.19 0.08 -18.40 16 7 C -0.54 -15.62 9.54 -35.63 -0.34 -15.96 16 8 H 0.07 1.87 7.85 -52.48 -0.41 1.46 16 9 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 10 N -0.77 -23.03 11.83 55.55 0.66 -22.37 16 11 Si 0.91 20.44 29.56 -169.99 -5.02 15.42 16 12 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 C 0.52 9.07 6.81 -10.99 -0.07 8.99 16 16 O -0.53 -10.36 11.44 5.55 0.06 -10.30 16 17 N -0.61 -8.45 2.97 -164.96 -0.49 -8.94 16 18 C 0.10 1.13 5.48 -3.49 -0.02 1.12 16 19 C -0.14 -1.35 6.10 -26.38 -0.16 -1.51 16 20 C -0.12 -1.03 5.88 -26.68 -0.16 -1.19 16 21 C -0.13 -1.33 5.37 -26.61 -0.14 -1.47 16 22 C 0.14 1.73 3.49 -67.60 -0.24 1.50 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.14 -1.87 7.61 37.16 0.28 -1.58 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.06 0.76 6.07 -51.93 -0.32 0.44 16 28 H 0.39 8.97 7.70 -40.82 -0.31 8.65 16 29 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.18 4.58 -51.93 -0.24 0.94 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.19 6.64 -51.93 -0.34 0.84 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.09 6.86 -51.93 -0.36 0.74 16 LS Contribution 315.74 15.07 4.76 4.76 Total: -1.00 -34.07 315.74 -7.20 -41.27 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.11 Total: 8.26 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -0.85 Total: 8.36 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.11 Total: -49.37 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: 0.14 Total: -28.70 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.07 -7.20 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274702332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.917 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds