Wall clock time and date at job start Mon Mar 30 2020 01:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47026 * 2 1 4 4 O 1.42899 * 109.46972 * 120.00125 * 2 1 3 5 5 C 1.42905 * 113.99778 * 150.00330 * 4 2 1 6 6 C 1.52999 * 109.46728 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46866 * 179.97438 * 7 6 5 9 9 N 1.29945 * 126.28943 * 90.02241 * 8 7 6 10 10 O 1.21301 * 110.25300 * 179.97438 * 9 8 7 11 11 C 1.33641 * 109.81235 * 0.02562 * 10 9 8 12 12 C 1.50699 * 126.55289 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47252 * 269.97939 * 12 11 10 14 14 C 1.50699 * 109.47252 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00024 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00357 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99964 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00190 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46935 * 89.99842 * 18 16 14 20 20 H 1.48502 * 109.46937 * 209.99962 * 18 16 14 21 21 H 1.48501 * 109.46864 * 330.00145 * 18 16 14 22 22 N 1.31132 * 106.89893 * 359.76747 * 11 10 9 23 23 H 1.08994 * 109.47480 * 299.99794 * 1 2 3 24 24 H 1.09001 * 109.47370 * 59.99740 * 1 2 3 25 25 H 1.09005 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47028 * 240.00291 * 2 1 3 27 27 H 1.09001 * 109.47258 * 300.00328 * 3 2 1 28 28 H 1.09001 * 109.46539 * 60.00101 * 3 2 1 29 29 H 1.08993 * 109.46966 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47187 * 59.99767 * 5 4 2 31 31 H 1.09001 * 109.46558 * 299.99719 * 5 4 2 32 32 H 1.09000 * 109.47486 * 59.99938 * 6 5 4 33 33 H 1.09001 * 109.47362 * 299.99215 * 6 5 4 34 34 H 1.08993 * 109.46955 * 300.00075 * 7 6 5 35 35 H 1.09000 * 109.47050 * 59.99904 * 7 6 5 36 36 H 1.08994 * 109.46823 * 29.98007 * 12 11 10 37 37 H 1.09001 * 109.47261 * 149.97419 * 12 11 10 38 38 H 1.08999 * 109.47264 * 299.99319 * 13 12 11 39 39 H 1.09001 * 109.47412 * 59.99573 * 13 12 11 40 40 H 0.96996 * 120.00208 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9886 6 6 3.6754 -2.0091 2.2941 7 6 5.0239 -2.7065 2.1031 8 6 5.4274 -3.3804 3.3892 9 7 5.1397 -4.5971 3.7432 10 8 5.6103 -4.8393 4.8346 11 6 6.2623 -3.7674 5.2948 12 6 6.9862 -3.6541 6.6117 13 6 6.0192 -3.1467 7.6832 14 6 6.7429 -3.0340 9.0003 15 1 7.7880 -3.2983 9.0665 16 6 6.0709 -2.5935 10.1207 17 7 4.7982 -2.2721 10.0402 18 14 6.9682 -2.4531 11.7531 19 1 7.5587 -1.0964 11.8783 20 1 6.0110 -2.6810 12.8653 21 1 8.0484 -3.4705 11.8132 22 7 6.1557 -2.8344 4.3795 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 -0.0005 30 1 4.0200 -0.5873 0.7124 31 1 3.1809 -2.0706 0.1986 32 1 2.9213 -2.7464 2.5698 33 1 3.7604 -1.2633 3.0845 34 1 4.9385 -3.4523 1.3129 35 1 5.7781 -1.9695 1.8272 36 1 7.3685 -4.6328 6.9014 37 1 7.8164 -2.9550 6.5110 38 1 5.6369 -2.1679 7.3935 39 1 5.1890 -3.8458 7.7839 40 1 4.3256 -1.9618 10.8284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291010506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:55 Heat of formation + Delta-G solvation = -14.184805 kcal Electronic energy + Delta-G solvation = -19538.922501 eV Core-core repulsion = 16356.177811 eV Total energy + Delta-G solvation = -3182.744690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.11016 -38.70982 -36.16715 -34.91553 -33.86248 -32.69868 -31.83078 -30.10644 -27.58248 -26.92354 -25.83567 -23.30118 -22.39494 -21.74484 -21.39196 -20.22514 -17.65093 -17.25555 -16.76031 -16.39763 -16.05345 -15.30482 -14.58768 -14.51972 -14.35762 -13.85381 -13.33692 -13.29895 -13.07341 -12.64741 -12.47449 -12.39343 -12.35214 -12.00979 -11.74408 -11.55791 -11.38122 -11.07213 -10.98736 -10.96670 -10.88451 -10.70282 -10.56116 -10.12067 -10.00050 -9.76501 -9.32576 -9.16662 -8.44467 -6.08561 -4.13477 1.60805 2.60420 3.29456 3.33261 3.36353 3.38560 3.42238 4.00321 4.35747 4.41964 4.58243 4.71835 4.84827 4.89247 4.97555 5.05144 5.19952 5.27890 5.28563 5.30514 5.40109 5.49682 5.54477 5.56057 5.66229 5.89188 5.91152 5.95916 6.04619 6.09725 6.16642 6.25166 6.43615 6.63235 7.05859 7.49922 7.56998 7.86807 8.22179 8.60416 8.91806 9.51446 11.02685 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.003071 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.975114 B = 9116.291839 C =10078.557233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.381 6.381 5 C 0.067 3.933 6 C -0.115 4.115 7 C -0.019 4.019 8 C 0.165 3.835 9 N -0.398 5.398 10 O 0.068 5.932 11 C 0.215 3.785 12 C -0.029 4.029 13 C 0.028 3.972 14 C -0.526 4.526 15 H 0.061 0.939 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 N -0.495 5.495 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 2.570 -20.398 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.234 4.234 4 O -0.301 6.301 5 C -0.010 4.010 6 C -0.154 4.154 7 C -0.058 4.058 8 C -0.108 4.108 9 N -0.109 5.109 10 O 0.012 5.988 11 C -0.004 4.004 12 C -0.068 4.068 13 C -0.011 4.011 14 C -0.564 4.564 15 H 0.080 0.920 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 N -0.229 5.229 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.845 2.475 -20.803 21.299 hybrid contribution 0.549 0.146 0.848 1.021 sum -3.296 2.622 -19.955 20.394 Atomic orbital electron populations 1.21868 0.93653 1.02739 1.02525 1.22076 0.95035 0.92486 0.88131 1.22311 1.01631 0.96816 1.02616 1.87957 1.36601 1.69987 1.35540 1.22466 0.85714 0.95353 0.97440 1.21453 0.95685 1.00480 0.97768 1.19713 0.97599 0.99083 0.89417 1.25598 0.97337 0.89000 0.98914 1.74539 1.19814 1.18612 0.97948 1.85268 1.50681 1.38691 1.24200 1.29635 0.91955 0.80606 0.98242 1.20756 0.98505 1.04002 0.83514 1.19157 0.93760 0.97136 0.91009 1.21065 0.96899 1.45337 0.93122 0.92028 1.25016 0.94863 0.95097 0.99285 1.69966 1.08789 1.44197 1.29957 0.86507 0.79444 0.78518 0.83032 1.20552 1.21174 1.19704 1.71930 1.19984 1.29182 1.01824 0.91655 0.91354 0.91997 0.92360 0.91766 0.91605 0.92419 0.93050 0.93237 0.90656 0.90053 0.89323 0.88693 0.89090 0.88208 0.95514 0.95789 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 2 C 0.08 0.71 3.34 -26.73 -0.09 0.62 16 3 C -0.18 -1.40 9.53 37.16 0.35 -1.04 16 4 O -0.38 -4.54 9.99 -35.23 -0.35 -4.89 16 5 C 0.07 0.68 5.75 37.16 0.21 0.90 16 6 C -0.12 -1.43 5.57 -26.73 -0.15 -1.58 16 7 C -0.02 -0.24 5.84 -27.88 -0.16 -0.40 16 8 C 0.16 2.81 7.47 -156.36 -1.17 1.64 16 9 N -0.40 -7.32 12.16 30.90 0.38 -6.94 16 10 O 0.07 1.29 11.31 18.11 0.20 1.49 16 11 C 0.21 4.14 7.77 -13.06 -0.10 4.04 16 12 C -0.03 -0.55 5.78 -27.89 -0.16 -0.72 16 13 C 0.03 0.68 4.95 -27.89 -0.14 0.55 16 14 C -0.53 -14.11 9.11 -34.44 -0.31 -14.42 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 N -0.50 -9.51 11.55 -9.87 -0.11 -9.62 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.44 7.79 -51.93 -0.40 0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 30 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -30.96 342.79 -7.14 -38.10 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -6.68 Total: -4.05 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.46 Total: -9.67 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.00 Total: -42.10 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.15 Total: -3.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.96 -7.14 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291010506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.917 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds