Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47067 * 2 1 4 4 C 1.50690 * 109.47693 * 120.00199 * 2 1 3 5 5 H 1.08004 * 120.00094 * 119.99789 * 4 2 1 6 6 C 1.37876 * 120.00246 * 300.00578 * 4 2 1 7 7 N 1.31508 * 119.99908 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00247 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47365 * 89.99322 * 8 6 4 10 10 H 1.48494 * 109.47454 * 209.99325 * 8 6 4 11 11 H 1.48506 * 109.47201 * 329.99734 * 8 6 4 12 12 N 1.46507 * 109.46777 * 240.00618 * 2 1 3 13 13 C 1.34777 * 119.99997 * 84.99830 * 12 2 1 14 14 O 1.21348 * 120.00288 * 359.97438 * 13 12 2 15 15 C 1.49453 * 119.99766 * 179.97438 * 13 12 2 16 16 O 1.21339 * 119.99940 * 353.22812 * 15 13 12 17 17 N 1.34779 * 119.99435 * 173.22910 * 15 13 12 18 18 C 1.46919 * 120.63468 * 351.34966 * 17 15 13 19 19 C 1.53195 * 108.77729 * 233.62919 * 18 17 15 20 20 C 1.53036 * 109.31513 * 305.36793 * 19 18 17 21 21 C 1.53043 * 109.53613 * 61.36344 * 20 19 18 22 22 H 1.09000 * 109.49920 * 58.58545 * 21 20 19 23 23 C 1.53005 * 109.49592 * 178.68333 * 21 20 19 24 24 C 1.46926 * 120.62381 * 171.37488 * 17 15 13 25 25 H 1.08998 * 109.47785 * 59.99261 * 1 2 3 26 26 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46970 * 299.99195 * 1 2 3 28 28 H 0.97001 * 120.00468 * 180.02562 * 7 6 4 29 29 H 0.96993 * 119.99780 * 264.99121 * 12 2 1 30 30 H 1.09006 * 109.58260 * 113.84421 * 18 17 15 31 31 H 1.09000 * 109.58999 * 353.42418 * 18 17 15 32 32 H 1.09003 * 109.49415 * 65.32226 * 19 18 17 33 33 H 1.09001 * 109.49592 * 185.41497 * 19 18 17 34 34 H 1.09000 * 109.46164 * 181.38363 * 20 19 18 35 35 H 1.09002 * 109.46281 * 301.34369 * 20 19 18 36 36 H 1.09005 * 109.46751 * 179.83636 * 23 21 20 37 37 H 1.09001 * 109.46947 * 299.83602 * 23 21 20 38 38 H 1.08997 * 109.46946 * 59.83921 * 23 21 20 39 39 H 1.08997 * 109.59001 * 246.15721 * 24 17 15 40 40 H 1.08997 * 109.58855 * 6.44006 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9436 0.8299 2.6034 8 14 2.3216 -1.1205 4.0078 9 1 3.6300 -0.5461 4.4121 10 1 1.3435 -0.9495 5.1119 11 1 2.4862 -2.5664 3.7117 12 7 2.0182 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8579 1.1592 -2.4118 15 6 2.6455 -0.7224 -3.5774 16 8 3.0503 -1.8634 -3.4965 17 7 2.6456 -0.0900 -4.7677 18 6 1.9887 1.2150 -4.9221 19 6 0.9982 1.1337 -6.0879 20 6 1.7297 0.6461 -7.3406 21 6 2.2968 -0.7531 -7.0900 22 1 1.4855 -1.4335 -6.8310 23 6 2.9996 -1.2531 -8.3538 24 6 3.3021 -0.6931 -5.9356 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.7095 1.1615 3.4845 29 1 2.2490 -1.6316 -1.1528 30 1 2.7379 1.9786 -5.1317 31 1 1.4547 1.4661 -4.0056 32 1 0.1991 0.4356 -5.8383 33 1 0.5746 2.1205 -6.2749 34 1 1.0325 0.6108 -8.1777 35 1 2.5443 1.3314 -7.5753 36 1 3.4059 -2.2485 -8.1739 37 1 2.2840 -1.2956 -9.1748 38 1 3.8097 -0.5714 -8.6128 39 1 4.1583 -0.0853 -6.2279 40 1 3.6368 -1.7002 -5.6871 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335929937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = -93.244433 kcal Electronic energy + Delta-G solvation = -21065.966675 eV Core-core repulsion = 17879.793702 eV Total energy + Delta-G solvation = -3186.172973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.96983 -39.93352 -38.74116 -36.98768 -34.85762 -34.22096 -32.83005 -31.09142 -28.19029 -27.39131 -27.04425 -24.79266 -23.25852 -22.40316 -21.37091 -20.71473 -19.11434 -18.09165 -17.85601 -17.06764 -16.98871 -16.42711 -16.15157 -15.59790 -15.26440 -15.12508 -14.87736 -14.46469 -14.42500 -14.06544 -13.81314 -13.57579 -13.13363 -13.02052 -12.89546 -12.80582 -12.65348 -12.41693 -12.29604 -12.13411 -12.02176 -11.79524 -11.63348 -11.31828 -11.17044 -10.65774 -10.16762 -9.95743 -9.77104 -8.20939 -6.38202 0.37711 1.37675 1.45141 1.46636 1.56975 2.15590 2.38295 2.64356 3.09770 3.43221 3.75975 3.84944 3.93710 4.08685 4.31360 4.41833 4.59205 4.65812 4.69566 4.78304 4.83698 4.88075 4.90296 4.98803 5.02561 5.07467 5.17043 5.23748 5.30023 5.35508 5.37453 5.48600 5.55704 5.61851 5.78774 6.01575 6.03990 6.47932 6.64815 6.82780 7.09617 7.34304 8.85191 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.041641 B = 0.004062 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.249932 B = 6891.916951 C = 7329.236452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.268 3.732 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.068 0.932 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.265 1.265 12 N -0.672 5.672 13 C 0.492 3.508 14 O -0.544 6.544 15 C 0.509 3.491 16 O -0.549 6.549 17 N -0.577 5.577 18 C 0.064 3.936 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.102 4.102 22 H 0.060 0.940 23 C -0.139 4.139 24 C 0.106 3.894 25 H 0.021 0.979 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.268 0.732 29 H 0.408 0.592 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -1.180 -19.906 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.034 0.966 4 C -0.593 4.593 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.189 1.189 12 N -0.321 5.321 13 C 0.273 3.727 14 O -0.425 6.425 15 C 0.292 3.708 16 O -0.428 6.428 17 N -0.309 5.309 18 C -0.057 4.057 19 C -0.169 4.169 20 C -0.148 4.148 21 C -0.122 4.122 22 H 0.078 0.922 23 C -0.196 4.196 24 C -0.015 4.015 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.243 0.757 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.829 -0.834 -19.743 19.845 hybrid contribution 0.284 -0.623 1.134 1.325 sum 2.114 -1.457 -18.609 18.785 Atomic orbital electron populations 1.21911 0.97329 0.99711 1.00372 1.18617 0.91758 0.92376 0.80676 0.96636 1.21494 1.33088 1.13794 0.90881 0.91392 1.25712 0.94695 0.95565 1.02011 1.70008 1.36514 1.23581 1.24852 0.85352 0.77952 0.79034 0.78067 1.20213 1.20518 1.18888 1.46323 1.61826 1.14693 1.09242 1.20393 0.79762 0.87178 0.85376 1.90445 1.51810 1.16455 1.83821 1.20134 0.79728 0.85883 0.85071 1.90685 1.48532 1.17589 1.85945 1.48079 1.53131 1.21664 1.08070 1.22898 0.97039 0.82501 1.03213 1.21935 0.97506 1.02861 0.94581 1.21617 1.00555 0.95369 0.97265 1.21479 0.97607 0.98147 0.94941 0.92155 1.21727 1.00912 1.01301 0.95705 1.22036 0.95774 0.99711 0.83970 0.95949 0.94324 0.90748 0.92271 0.75694 0.90290 0.86533 0.92846 0.88750 0.89992 0.90496 0.92517 0.91114 0.91359 0.89324 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.26 71.98 0.67 -6.01 16 2 C 0.27 13.89 2.56 44.24 0.11 14.00 16 3 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 4 C -0.55 -29.81 8.73 25.60 0.22 -29.59 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.18 11.32 21.45 0.24 -50.94 16 8 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 12 N -0.67 -30.07 5.06 -447.44 -2.26 -32.34 16 13 C 0.49 20.62 7.70 87.27 0.67 21.29 16 14 O -0.54 -24.26 12.85 -3.24 -0.04 -24.30 16 15 C 0.51 18.58 7.73 87.27 0.67 19.25 16 16 O -0.55 -21.59 15.93 -3.21 -0.05 -21.64 16 17 N -0.58 -16.70 2.97 -820.49 -2.44 -19.14 16 18 C 0.06 1.68 5.98 86.36 0.52 2.19 16 19 C -0.13 -2.53 6.08 30.67 0.19 -2.35 16 20 C -0.11 -1.65 5.17 30.62 0.16 -1.49 16 21 C -0.10 -1.76 2.87 -10.71 -0.03 -1.79 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 C -0.14 -1.69 9.20 71.98 0.66 -1.03 16 24 C 0.11 2.36 5.73 86.36 0.49 2.86 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 4.00 6.07 -2.38 -0.01 3.99 16 28 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.41 17.17 8.03 -92.71 -0.74 16.42 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.12 3.84 4.32 -47.37 -0.20 3.64 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 2.01 7.00 -2.39 -0.02 2.00 16 Total: -1.00 -62.31 322.05 2.36 -59.96 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.10 Total: 25.27 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 4.79 Total: 18.92 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -4.46 Total: -102.41 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -0.09 Total: -45.94 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -62.31 2.36 -59.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335929937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.288 kcal (2) G-P(sol) polarization free energy of solvation -62.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds