Wall clock time and date at job start Mon Mar 30 2020 01:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 9 9 H 1.09002 * 109.46716 * 299.99630 * 8 2 1 10 10 C 1.50703 * 109.47466 * 59.99628 * 8 2 1 11 11 O 1.21278 * 119.99818 * 0.02562 * 10 8 2 12 12 N 1.34777 * 119.99991 * 180.02562 * 10 8 2 13 13 C 1.46496 * 120.00012 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47248 * 179.97438 * 13 12 10 15 15 O 1.21288 * 120.00047 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00152 * 180.02562 * 14 13 12 17 17 C 1.37091 * 119.99811 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00361 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99846 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00498 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99917 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47134 * 90.00060 * 21 19 17 23 23 H 1.48492 * 109.47311 * 209.99875 * 21 19 17 24 24 H 1.48497 * 109.47311 * 330.00554 * 21 19 17 25 25 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 26 26 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 27 27 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 29 29 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 31 31 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 32 32 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 34 34 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 35 35 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 36 36 H 0.97004 * 120.00071 * 359.97438 * 12 10 8 37 37 H 1.08993 * 109.47156 * 300.00430 * 13 12 10 38 38 H 1.09002 * 109.47021 * 60.00038 * 13 12 10 39 39 H 0.96998 * 119.99822 * 359.97438 * 16 14 13 40 40 H 0.97003 * 120.00932 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 3.5704 -0.7203 -1.2490 8 6 2.0399 -0.7211 -1.2493 9 1 1.6765 -1.7488 -1.2493 10 6 1.5375 -0.0107 -2.4798 11 8 0.8406 0.9756 -2.3684 12 7 1.8626 -0.4714 -3.7039 13 6 1.3738 0.2189 -4.9000 14 6 1.8762 -0.4914 -6.1305 15 8 2.5744 -1.4769 -6.0193 16 7 1.5506 -0.0308 -7.3546 17 6 2.0073 -0.6773 -8.4740 18 1 2.6283 -1.5553 -8.3749 19 6 1.6712 -0.2028 -9.7360 20 7 2.1093 -0.8221 -10.8090 21 14 0.5965 1.3155 -9.9073 22 1 1.4546 2.5267 -9.9530 23 1 -0.1955 1.2226 -11.1599 24 1 -0.3236 1.4044 -8.7452 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7490 1.2492 29 1 1.6767 -0.2074 2.1392 30 1 3.9329 0.3071 1.2496 31 1 3.9334 -1.2349 2.1391 32 1 5.1704 -1.4415 0.0004 33 1 3.7175 -2.4693 -0.0002 34 1 3.9334 0.3075 -1.2488 35 1 3.9337 -1.2340 -2.1391 36 1 2.4204 -1.2600 -3.7929 37 1 0.2839 0.2189 -4.8995 38 1 1.7371 1.2466 -4.9004 39 1 0.9926 0.7576 -7.4436 40 1 1.8744 -0.4911 -11.6900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424842873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:39 Heat of formation + Delta-G solvation = -101.063553 kcal Electronic energy + Delta-G solvation = -20618.745632 eV Core-core repulsion = 17432.233597 eV Total energy + Delta-G solvation = -3186.512035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38536 -38.64620 -37.57443 -34.60787 -33.84011 -32.50094 -31.83951 -31.33343 -27.98917 -26.44806 -24.47179 -23.29548 -21.46212 -20.43127 -19.82977 -19.53591 -18.61735 -17.18643 -15.94676 -15.44917 -15.36853 -15.04791 -14.72912 -14.58020 -14.34270 -14.11088 -14.03548 -13.23211 -13.05530 -12.71310 -12.47558 -12.37139 -12.18762 -12.09986 -11.87955 -11.58518 -11.33036 -11.23939 -11.01498 -10.71415 -10.65809 -10.57012 -10.22618 -10.07848 -9.71419 -9.39847 -8.84486 -8.78708 -8.32094 -6.42285 -3.94928 2.77341 2.98299 3.02956 3.11011 3.31550 3.54799 4.02138 4.45078 4.50425 4.55359 4.60202 4.95143 5.00364 5.12455 5.13051 5.24267 5.24887 5.33314 5.40377 5.61146 5.62800 5.68387 5.77744 5.79645 5.81860 5.85537 5.90731 5.93002 6.00284 6.09025 6.15641 6.35236 6.40406 6.66537 7.42587 7.75930 7.98931 8.38310 8.46176 8.80146 9.28282 9.61902 10.69885 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037869 B = 0.003683 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.220071 B = 7601.534232 C = 8128.500900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.068 4.068 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.100 4.100 9 H 0.096 0.904 10 C 0.516 3.484 11 O -0.545 6.545 12 N -0.708 5.708 13 C 0.106 3.894 14 C 0.438 3.562 15 O -0.579 6.579 16 N -0.576 5.576 17 C -0.311 4.311 18 H 0.122 0.878 19 C 0.046 3.954 20 N -0.874 5.874 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.374 0.626 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 2.072 21.119 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.087 4.087 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.121 4.121 9 H 0.114 0.886 10 C 0.302 3.698 11 O -0.424 6.424 12 N -0.362 5.362 13 C -0.022 4.022 14 C 0.224 3.776 15 O -0.463 6.463 16 N -0.214 5.214 17 C -0.439 4.439 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.513 5.513 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.207 0.793 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.563 2.090 20.977 21.088 hybrid contribution -0.606 0.777 -0.544 1.126 sum -1.169 2.867 20.432 20.665 Atomic orbital electron populations 1.22073 0.94772 1.01446 1.03401 1.20883 0.96187 0.99449 0.92189 0.90633 1.21630 0.95355 1.00718 0.97510 1.21569 0.95801 1.00836 0.97715 1.21523 1.00421 0.99434 0.94112 1.21567 0.92889 1.01792 0.98891 1.21388 0.97017 1.00844 0.92888 0.88577 1.20616 0.80093 0.84628 0.84439 1.90605 1.38387 1.26684 1.86713 1.45771 1.53343 1.32515 1.04555 1.20965 0.99929 0.96668 0.84674 1.19661 0.86303 0.87548 0.84129 1.90536 1.41865 1.28147 1.85786 1.42128 1.46253 1.27294 1.05717 1.19443 1.30317 1.12197 0.81958 0.86084 1.25064 0.97627 0.98134 0.95049 1.69612 1.43980 1.39660 0.98063 0.86671 0.80838 0.83169 0.78817 1.19382 1.19963 1.19243 0.93231 0.89716 0.93568 0.91939 0.91842 0.91952 0.92083 0.91645 0.91706 0.91345 0.90949 0.75039 0.89821 0.89814 0.79254 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 8.87 37.15 0.33 -1.46 16 2 C -0.07 -0.72 1.89 -90.63 -0.17 -0.89 16 3 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 4 C -0.11 -0.96 5.20 -26.73 -0.14 -1.10 16 5 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.11 -1.14 5.10 -26.70 -0.14 -1.27 16 8 C -0.10 -1.12 2.06 -91.74 -0.19 -1.31 16 9 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 10 C 0.52 7.56 6.86 -10.98 -0.08 7.48 16 11 O -0.55 -9.35 13.66 5.56 0.08 -9.27 16 12 N -0.71 -11.10 5.42 -61.48 -0.33 -11.43 16 13 C 0.11 1.82 6.15 -5.20 -0.03 1.79 16 14 C 0.44 9.58 7.85 -10.98 -0.09 9.49 16 15 O -0.58 -14.53 15.24 5.55 0.08 -14.45 16 16 N -0.58 -13.37 5.09 -10.97 -0.06 -13.43 16 17 C -0.31 -8.55 10.16 -14.94 -0.15 -8.70 16 18 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 19 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 20 N -0.87 -24.92 13.96 55.50 0.77 -24.15 16 21 Si 0.88 18.97 27.74 -169.99 -4.71 14.25 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.17 5.51 -51.93 -0.29 0.88 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 36 H 0.41 6.41 6.86 -40.82 -0.28 6.13 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 40 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -31.01 320.53 -6.65 -37.66 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -6.24 Total: 13.06 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.06 Total: 2.93 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.39 Total: -49.01 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.16 Total: -23.72 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.01 -6.65 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424842873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.409 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds