Wall clock time and date at job start Mon Mar 30 2020 02:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.90028 * 2 1 4 4 C 1.55422 * 111.10766 * 236.03530 * 2 1 3 5 5 C 1.54321 * 103.04810 * 206.29505 * 4 2 1 6 6 N 1.47448 * 107.23159 * 22.28093 * 5 4 2 7 7 C 1.46900 * 111.00041 * 123.26094 * 6 5 4 8 8 C 1.50699 * 109.47353 * 69.15552 * 7 6 5 9 9 O 1.21286 * 119.99556 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00403 * 180.02562 * 8 7 6 11 11 C 1.47071 * 136.05508 * 359.62717 * 10 8 7 12 12 C 1.53750 * 87.88496 * 152.96489 * 11 10 8 13 13 O 1.42898 * 114.57633 * 272.66267 * 12 11 10 14 14 C 1.50711 * 114.08389 * 139.78300 * 12 11 10 15 15 H 1.08004 * 119.99673 * 266.56127 * 14 12 11 16 16 C 1.37874 * 119.99870 * 86.55925 * 14 12 11 17 17 N 1.31510 * 120.00143 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99694 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.46891 * 60.00319 * 18 16 14 20 20 H 1.48497 * 109.47041 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47099 * 300.00189 * 18 16 14 22 22 C 1.47063 * 136.06270 * 180.02562 * 10 8 7 23 23 C 1.47846 * 108.56553 * 0.99350 * 6 5 4 24 24 H 1.09000 * 109.47725 * 296.13408 * 1 2 3 25 25 H 1.08998 * 109.46970 * 56.14384 * 1 2 3 26 26 H 1.09010 * 109.46460 * 176.13741 * 1 2 3 27 27 H 1.09004 * 110.69757 * 87.90380 * 4 2 1 28 28 H 1.09004 * 110.69257 * 324.68423 * 4 2 1 29 29 H 1.08999 * 109.88748 * 262.87827 * 5 4 2 30 30 H 1.09000 * 109.89149 * 141.68777 * 5 4 2 31 31 H 1.09001 * 109.47310 * 189.16067 * 7 6 5 32 32 H 1.09001 * 109.46761 * 309.15792 * 7 6 5 33 33 H 1.08997 * 113.47005 * 267.70211 * 11 10 8 34 34 H 1.09004 * 113.46515 * 38.13698 * 11 10 8 35 35 H 0.96704 * 114.00604 * 273.67318 * 13 12 11 36 36 H 0.97009 * 120.00045 * 179.97438 * 17 16 14 37 37 H 1.09001 * 113.46676 * 321.86828 * 22 10 8 38 38 H 1.09007 * 113.46693 * 92.29862 * 22 10 8 39 39 H 1.09002 * 110.37464 * 94.73346 * 23 6 5 40 40 H 1.08999 * 110.37318 * 216.96123 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0183 0.0000 4 6 2.0897 -0.8101 -1.2026 5 6 3.4726 -1.2728 -0.6975 6 7 3.4322 -1.2418 0.7761 7 6 3.7617 -2.5578 1.3396 8 6 5.2176 -2.8593 1.0937 9 8 5.9124 -2.0566 0.5072 10 7 5.7476 -4.0208 1.5255 11 6 5.2588 -5.2026 2.2517 12 6 6.3560 -6.0181 1.5481 13 8 5.9808 -6.5437 0.2734 14 6 7.0328 -7.0317 2.4346 15 1 7.9417 -6.7711 2.9566 16 6 6.4917 -8.2915 2.5792 17 7 5.3852 -8.6089 1.9432 18 14 7.3310 -9.5481 3.6775 19 1 7.3989 -9.0253 5.0656 20 1 6.5561 -10.8148 3.6624 21 1 8.7056 -9.8033 3.1769 22 6 7.0708 -4.6612 1.4842 23 6 2.0849 -0.8058 1.2010 24 1 -0.3634 0.4526 0.9226 25 1 -0.3633 0.5725 -0.8534 26 1 -0.3632 -1.0255 -0.0692 27 1 2.1937 -0.1732 -2.0811 28 1 1.4522 -1.6671 -1.4198 29 1 4.2457 -0.5963 -1.0616 30 1 3.6726 -2.2875 -1.0417 31 1 3.5678 -2.5527 2.4122 32 1 3.1470 -3.3214 0.8629 33 1 5.3929 -5.1350 3.3312 34 1 4.2481 -5.4979 1.9697 35 1 5.5307 -7.3986 0.3173 36 1 5.0046 -9.4955 2.0447 37 1 7.6044 -4.4951 0.5483 38 1 7.6825 -4.4509 2.3616 39 1 1.4523 -1.6702 1.4028 40 1 2.1525 -0.1715 2.0848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565429846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:45 Heat of formation + Delta-G solvation = -41.416813 kcal Electronic energy + Delta-G solvation = -20944.183805 eV Core-core repulsion = 17760.258247 eV Total energy + Delta-G solvation = -3183.925558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80606 -38.86105 -37.08494 -33.99468 -33.24979 -32.20408 -29.97699 -29.00648 -27.23609 -25.51593 -25.07966 -24.21580 -21.14402 -20.47265 -19.91060 -18.14851 -17.37223 -16.40797 -16.28675 -15.60801 -15.18053 -14.78474 -14.71209 -14.12506 -13.81528 -13.54153 -13.27494 -12.95929 -12.90053 -12.65104 -12.27038 -12.10759 -12.06343 -11.66452 -11.56244 -11.13374 -11.05868 -11.05563 -10.95332 -10.77051 -10.64944 -10.50528 -10.27685 -9.58917 -9.13335 -8.78074 -8.39648 -8.19042 -7.79453 -6.41585 -4.51887 3.15165 3.21039 3.22997 3.27078 3.44557 4.13080 4.18594 4.47966 4.61989 4.81394 4.82765 5.07601 5.25104 5.31048 5.37675 5.41903 5.52034 5.54799 5.60775 5.65965 5.67926 5.83885 5.90368 5.93893 6.02139 6.14233 6.20834 6.32391 6.40938 6.51068 6.62464 6.67593 7.04089 7.06394 7.12512 7.61559 7.79754 8.50657 8.57550 8.86823 9.19545 9.47595 10.64982 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036427 B = 0.003936 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.483260 B = 7112.885187 C = 7367.614069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.141 4.141 5 C 0.052 3.948 6 N -0.513 5.513 7 C 0.040 3.960 8 C 0.536 3.464 9 O -0.546 6.546 10 N -0.639 5.639 11 C 0.071 3.929 12 C 0.240 3.760 13 O -0.571 6.571 14 C -0.534 4.534 15 H 0.072 0.928 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.909 3.091 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.109 3.891 23 C 0.046 3.954 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 9.930 -0.733 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.179 4.179 5 C -0.075 4.075 6 N -0.237 5.237 7 C -0.091 4.091 8 C 0.324 3.676 9 O -0.425 6.425 10 N -0.373 5.373 11 C -0.052 4.052 12 C 0.198 3.802 13 O -0.384 6.384 14 C -0.572 4.572 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.736 3.264 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.013 4.013 23 C -0.082 4.082 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.360 11.280 -1.177 14.090 hybrid contribution -0.587 -1.866 0.648 2.061 sum -8.947 9.414 -0.528 12.998 Atomic orbital electron populations 1.21714 0.94469 1.01894 1.01773 1.22327 0.95373 0.99757 0.94614 0.89780 1.22979 0.96929 0.99778 0.98212 1.22763 0.96520 1.01389 0.86867 1.63272 1.26467 1.25295 1.08662 1.22050 0.94417 0.90960 1.01649 1.19825 0.89095 0.79277 0.79357 1.90631 1.62548 1.46330 1.42949 1.49741 1.14809 1.16912 1.55884 1.24243 1.01485 0.82506 0.97010 1.19575 0.89224 0.88752 0.82633 1.86045 1.80669 1.42969 1.28733 1.21423 1.11032 0.97179 1.27586 0.90969 1.25075 0.94298 0.98324 0.95331 1.69254 1.19768 1.22106 1.42874 0.86361 0.79604 0.79804 0.80600 1.19854 1.20994 1.19819 1.23287 0.86228 0.90842 1.00985 1.23132 0.88379 0.98413 0.98271 0.92441 0.92472 0.92643 0.90824 0.91551 0.89956 0.92810 0.88482 0.92060 0.90103 0.91982 0.75023 0.91539 0.91678 0.89818 0.93483 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.31 37.16 0.35 -0.80 16 2 C -0.10 -1.04 3.65 -88.33 -0.32 -1.36 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.14 -1.58 6.42 -24.75 -0.16 -1.74 16 5 C 0.05 0.78 5.61 -2.83 -0.02 0.76 16 6 N -0.51 -7.92 4.87 -232.68 -1.13 -9.05 16 7 C 0.04 0.67 4.85 -4.98 -0.02 0.64 16 8 C 0.54 11.15 7.70 -10.99 -0.08 11.07 16 9 O -0.55 -12.89 16.28 5.55 0.09 -12.80 16 10 N -0.64 -13.69 3.69 -185.07 -0.68 -14.37 16 11 C 0.07 1.51 7.86 -8.38 -0.07 1.44 16 12 C 0.24 5.75 1.59 -91.12 -0.14 5.61 16 13 O -0.57 -14.75 13.55 -35.23 -0.48 -15.23 16 14 C -0.53 -13.29 8.68 -34.44 -0.30 -13.59 16 15 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 16 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 17 N -0.90 -22.55 11.01 55.43 0.61 -21.94 16 18 Si 0.91 19.22 29.54 -169.99 -5.02 14.19 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 C 0.11 2.41 8.02 -8.51 -0.07 2.35 16 23 C 0.05 0.54 6.15 -2.30 -0.01 0.53 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.46 8.09 -51.92 -0.42 0.04 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.72 8.00 -51.93 -0.42 0.30 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.05 0.89 7.30 -51.93 -0.38 0.51 16 31 H 0.10 1.44 8.08 -51.93 -0.42 1.02 16 32 H 0.06 0.98 7.98 -51.93 -0.41 0.57 16 33 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.39 10.22 6.32 45.56 0.29 10.51 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.70 8.10 -51.92 -0.42 1.28 16 39 H 0.05 0.53 7.70 -51.93 -0.40 0.13 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 326.44 15.07 4.92 4.92 Total: -1.00 -28.26 326.44 -8.57 -36.83 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.93 Total: 10.84 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.95 Total: 6.60 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.20 Total: -45.36 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.39 Total: -28.03 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.26 -8.57 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565429846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.586 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds