Wall clock time and date at job start Mon Mar 30 2020 01:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99792 * 2 1 4 4 O 1.42902 * 109.47002 * 134.99975 * 3 2 1 5 5 C 1.42897 * 114.00207 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47162 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99909 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99711 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99730 * 179.97438 * 8 6 5 10 10 C 1.53081 * 109.43848 * 84.79387 * 9 8 6 11 11 C 1.53190 * 109.29209 * 181.23616 * 10 9 8 12 12 N 1.46921 * 108.89311 * 305.57883 * 11 10 9 13 13 C 1.36940 * 120.63187 * 233.51481 * 12 11 10 14 14 H 1.08001 * 120.00319 * 152.61971 * 13 12 11 15 15 C 1.38813 * 119.99903 * 332.62203 * 13 12 11 16 16 N 1.31624 * 120.00070 * 159.34992 * 15 13 12 17 17 Si 1.86800 * 120.00077 * 339.35529 * 15 13 12 18 18 H 1.48494 * 109.47321 * 92.87851 * 17 15 13 19 19 H 1.48501 * 109.47194 * 212.88430 * 17 15 13 20 20 H 1.48509 * 109.46983 * 332.87654 * 17 15 13 21 21 C 1.46923 * 118.74178 * 53.54201 * 12 11 10 22 22 C 1.53035 * 109.45960 * 204.99782 * 9 8 6 23 23 H 1.08001 * 119.99836 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00274 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99879 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47256 * 15.00205 * 3 2 1 27 27 H 1.08998 * 109.47628 * 255.00252 * 3 2 1 28 28 H 1.09006 * 109.47008 * 60.00442 * 5 4 3 29 29 H 1.09000 * 109.47007 * 300.00328 * 5 4 3 30 30 H 0.96998 * 120.00063 * 359.97438 * 8 6 5 31 31 H 1.08998 * 109.46073 * 324.97324 * 9 8 6 32 32 H 1.08992 * 109.38800 * 61.36034 * 10 9 8 33 33 H 1.09002 * 109.61927 * 301.25313 * 10 9 8 34 34 H 1.08999 * 109.58729 * 185.71870 * 11 10 9 35 35 H 1.09004 * 109.58886 * 65.43758 * 11 10 9 36 36 H 0.97001 * 119.99914 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.59094 * 66.17180 * 21 12 11 38 38 H 1.09001 * 109.59077 * 186.46452 * 21 12 11 39 39 H 1.09002 * 109.49848 * 58.67960 * 22 9 8 40 40 H 1.09002 * 109.52425 * 298.59433 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4349 1.0321 6 6 4.9947 2.2563 2.0613 7 8 5.0897 1.2102 2.6675 8 7 5.8599 3.2597 2.3088 9 6 6.9155 3.0864 3.3098 10 6 8.1204 2.3962 2.6652 11 6 9.2099 2.1889 3.7219 12 7 9.5160 3.4815 4.3496 13 6 10.8037 3.9445 4.4013 14 1 10.9945 5.0069 4.4371 15 6 11.8638 3.0484 4.4075 16 7 13.0663 3.4490 4.0524 17 14 11.5838 1.2739 4.9195 18 1 11.2988 0.4507 3.7169 19 1 12.7998 0.7564 5.5969 20 1 10.4301 1.2039 5.8520 21 6 8.4144 4.2676 4.9215 22 6 7.3348 4.4551 3.8508 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3855 2.1161 0.2660 27 1 2.4755 1.4869 -0.9926 28 1 3.2689 3.2696 1.3194 29 1 4.3587 2.6396 0.0608 30 1 5.7836 4.0965 1.8243 31 1 6.5423 2.4711 4.1284 32 1 8.5079 3.0214 1.8609 33 1 7.8163 1.4304 2.2617 34 1 10.1074 1.7911 3.2481 35 1 8.8560 1.4895 4.4794 36 1 13.8070 2.8226 4.0564 37 1 7.9931 3.7385 5.7763 38 1 8.7874 5.2406 5.2415 39 1 6.4702 4.9535 4.2892 40 1 7.7311 5.0626 3.0371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609328653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:35 Heat of formation + Delta-G solvation = -60.886604 kcal Electronic energy + Delta-G solvation = -20415.619813 eV Core-core repulsion = 17230.849982 eV Total energy + Delta-G solvation = -3184.769832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07799 -39.43172 -38.53949 -36.07287 -34.76281 -34.09523 -32.07431 -31.97306 -29.31226 -26.92915 -26.12244 -24.45384 -23.61028 -21.64628 -21.25313 -20.78359 -18.93142 -18.23947 -17.91604 -17.35796 -17.23048 -16.63363 -16.08850 -15.97053 -15.63127 -15.36545 -14.96847 -14.87392 -14.50158 -14.16383 -14.00224 -13.87589 -13.44793 -13.18040 -13.10775 -12.70461 -12.57285 -12.23472 -12.05658 -11.88761 -11.77819 -11.50357 -11.46385 -10.98720 -10.88938 -10.70771 -10.25649 -10.05955 -8.98133 -8.18702 -5.49662 1.19532 1.27569 1.38250 1.46511 1.59101 1.91509 2.38948 3.02844 3.08992 3.32777 3.70628 3.83176 3.93615 4.07680 4.17615 4.22084 4.25716 4.30220 4.31406 4.45003 4.47264 4.61298 4.67139 4.69254 4.84862 4.93661 4.98188 5.01200 5.08134 5.14720 5.41879 5.49127 5.65827 5.70055 5.85836 6.10732 6.12005 6.61014 6.89155 7.27733 7.60011 8.01593 9.00839 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038457 B = 0.003510 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.916332 B = 7975.827268 C = 8375.647888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.084 3.916 4 O -0.400 6.400 5 C 0.049 3.951 6 C 0.505 3.495 7 O -0.579 6.579 8 N -0.706 5.706 9 C 0.160 3.840 10 C -0.130 4.130 11 C 0.125 3.875 12 N -0.619 5.619 13 C -0.243 4.243 14 H 0.063 0.937 15 C -0.031 4.031 16 N -0.953 5.953 17 Si 0.936 3.064 18 H -0.282 1.282 19 H -0.309 1.309 20 H -0.266 1.266 21 C 0.142 3.858 22 C -0.123 4.123 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.419 0.581 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.647 1.257 -9.699 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.009 3.991 4 O -0.319 6.319 5 C -0.030 4.030 6 C 0.292 3.708 7 O -0.457 6.457 8 N -0.359 5.359 9 C 0.055 3.945 10 C -0.171 4.171 11 C -0.001 4.001 12 N -0.344 5.344 13 C -0.373 4.373 14 H 0.081 0.919 15 C -0.226 4.226 16 N -0.599 5.599 17 Si 0.766 3.234 18 H -0.209 1.209 19 H -0.238 1.238 20 H -0.191 1.191 21 C 0.017 3.983 22 C -0.162 4.162 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.257 0.743 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.419 0.336 -9.162 27.022 hybrid contribution 0.742 -0.666 0.010 0.997 sum -24.677 -0.330 -9.153 26.322 Atomic orbital electron populations 1.24058 0.94935 1.03541 0.97752 1.22808 0.96418 0.98151 1.02407 1.21796 0.88309 0.96573 0.92451 1.88011 1.45552 1.36597 1.61760 1.22345 0.92519 0.89461 0.98717 1.21052 0.82837 0.83307 0.83614 1.90724 1.74048 1.29114 1.51859 1.45863 1.30520 1.17727 1.41834 1.20689 0.85862 0.97735 0.90245 1.22230 0.95780 1.00344 0.98710 1.21263 0.96863 0.87877 0.94095 1.44545 1.03741 1.20248 1.65876 1.18917 0.81978 0.92456 1.43906 0.91898 1.25815 0.94947 1.01243 1.00621 1.69940 1.01508 1.36808 1.51685 0.86077 0.76076 0.82571 0.78655 1.20887 1.23751 1.19107 1.21127 0.87490 0.95735 0.93985 1.22142 0.99360 0.94841 0.99890 0.86890 0.86751 0.87952 0.90511 0.90572 0.86645 0.87215 0.74345 0.91762 0.91328 0.92756 0.93212 0.95923 0.92969 0.95062 0.91055 0.88266 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 14.31 67.78 0.97 -0.94 16 2 C -0.18 -2.86 9.89 25.64 0.25 -2.60 16 3 C 0.08 1.22 6.35 71.24 0.45 1.67 16 4 O -0.40 -9.19 9.86 -129.94 -1.28 -10.47 16 5 C 0.05 0.80 6.42 71.24 0.46 1.26 16 6 C 0.50 13.16 7.87 87.66 0.69 13.85 16 7 O -0.58 -22.08 16.16 16.00 0.26 -21.82 16 8 N -0.71 -15.55 5.08 -442.34 -2.25 -17.79 16 9 C 0.16 4.76 2.41 45.03 0.11 4.87 16 10 C -0.13 -4.72 5.66 30.68 0.17 -4.55 16 11 C 0.12 5.58 4.20 86.36 0.36 5.94 16 12 N -0.62 -28.94 2.77 -699.09 -1.94 -30.88 16 13 C -0.24 -13.63 10.03 84.03 0.84 -12.79 16 14 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 15 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 16 N -0.95 -60.05 13.97 21.65 0.30 -59.75 16 17 Si 0.94 48.25 24.34 68.60 1.67 49.92 16 18 H -0.28 -14.05 6.62 99.48 0.66 -13.39 16 19 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 20 H -0.27 -13.38 6.64 99.48 0.66 -12.72 16 21 C 0.14 5.12 6.52 86.37 0.56 5.69 16 22 C -0.12 -3.30 5.55 30.67 0.17 -3.13 16 23 H 0.11 1.06 8.06 -2.91 -0.02 1.04 16 24 H 0.11 0.91 7.90 -2.91 -0.02 0.89 16 25 H 0.10 1.87 8.06 -2.91 -0.02 1.85 16 26 H 0.08 0.76 7.86 -2.38 -0.02 0.74 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.42 5.70 8.60 -92.71 -0.80 4.90 16 31 H 0.06 2.22 7.58 -2.39 -0.02 2.21 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.46 4.50 -2.39 -0.01 2.45 16 35 H 0.02 1.04 7.07 -2.38 -0.02 1.02 16 36 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 37 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 39 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -78.06 326.04 2.38 -75.68 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.13 Total: 7.24 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.49 Total: 7.87 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.88 Total: -108.42 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.02 Total: -32.29 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.67 Total: 49.92 kcal Total: -78.06 2.38 -75.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.797 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds